EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCIG00000030454 (Gene tree)
Gene ID: 110223536
Gene Symbol: LSM7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Phascolarctos_cinereus
Status: putative
Strand: Plus strand
Length: 9481 bases
Position: chrFUWB01000271.1:204597-214077
Accession: 110223536
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCIP00000041712	LSM	PF01423.22	4.8e-21	1	1
ENSPCIP00000041713	LSM	PF01423.22	5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCIT00000051369	LSM7-201	517	-	ENSPCIP00000041712	102 (aa)	-	-
ENSPCIT00000051370	LSM7-202	813	-	ENSPCIP00000041713	103 (aa)	XP_020864807	UPI0000F2CB76

Gene Model

Click here to download ENSPCIG00000030454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCIG00000030454's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCIG00000030454	LSM7	67	35.294	ENSPCIG00000017076	-	86	35.294
ENSPCIG00000030454	LSM7	67	38.235	ENSPCIG00000022813	-	88	38.235
ENSPCIG00000030454	LSM7	73	35.526	ENSPCIG00000021467	LSM8	74	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCIG00000030454	LSM7	100	99.029	ENSG00000130332	LSM7	100	99.029	Homo_sapiens
ENSPCIG00000030454	LSM7	92	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSPCIG00000030454	LSM7	99	98.020	ENSAMEG00000005484	LSM7	100	96.117	Ailuropoda_melanoleuca
ENSPCIG00000030454	LSM7	95	94.898	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSPCIG00000030454	LSM7	99	96.040	ENSAOCG00000001077	lsm7	92	96.040	Amphiprion_ocellaris
ENSPCIG00000030454	LSM7	100	96.117	ENSAPEG00000000694	lsm7	100	96.117	Amphiprion_percula
ENSPCIG00000030454	LSM7	99	96.040	ENSAPEG00000024447	lsm7	92	96.040	Amphiprion_percula
ENSPCIG00000030454	LSM7	100	96.117	ENSATEG00000008557	lsm7	100	96.117	Anabas_testudineus
ENSPCIG00000030454	LSM7	100	90.291	ENSANAG00000022222	-	100	90.291	Aotus_nancymaae
ENSPCIG00000030454	LSM7	100	99.029	ENSANAG00000037196	-	100	99.029	Aotus_nancymaae
ENSPCIG00000030454	LSM7	100	95.146	ENSACLG00000021021	lsm7	100	95.146	Astatotilapia_calliptera
ENSPCIG00000030454	LSM7	100	96.117	ENSAMXG00000037622	lsm7	100	96.117	Astyanax_mexicanus
ENSPCIG00000030454	LSM7	100	99.029	ENSBTAG00000004521	LSM7	100	99.029	Bos_taurus
ENSPCIG00000030454	LSM7	98	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSPCIG00000030454	LSM7	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSPCIG00000030454	LSM7	99	98.020	ENSCAFG00000019409	LSM7	98	98.020	Canis_familiaris
ENSPCIG00000030454	LSM7	98	99.000	ENSCAFG00020018168	LSM7	74	99.000	Canis_lupus_dingo
ENSPCIG00000030454	LSM7	99	99.010	ENSCHIG00000023663	LSM7	100	97.087	Capra_hircus
ENSPCIG00000030454	LSM7	70	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSPCIG00000030454	LSM7	100	99.029	ENSCPOG00000014025	LSM7	100	99.029	Cavia_porcellus
ENSPCIG00000030454	LSM7	100	99.020	ENSCCAG00000035456	LSM7	100	99.020	Cebus_capucinus
ENSPCIG00000030454	LSM7	100	99.029	ENSCATG00000023543	LSM7	100	99.029	Cercocebus_atys
ENSPCIG00000030454	LSM7	100	99.029	ENSCLAG00000011635	LSM7	100	99.029	Chinchilla_lanigera
ENSPCIG00000030454	LSM7	100	99.029	ENSCSAG00000011599	LSM7	100	99.029	Chlorocebus_sabaeus
ENSPCIG00000030454	LSM7	71	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSPCIG00000030454	LSM7	94	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSPCIG00000030454	LSM7	100	99.029	ENSCANG00000035525	LSM7	100	99.029	Colobus_angolensis_palliatus
ENSPCIG00000030454	LSM7	89	89.011	ENSCGRG00001016005	-	93	89.011	Cricetulus_griseus_chok1gshd
ENSPCIG00000030454	LSM7	100	98.058	ENSCGRG00001000807	-	100	98.058	Cricetulus_griseus_chok1gshd
ENSPCIG00000030454	LSM7	89	89.011	ENSCGRG00000006821	-	93	89.011	Cricetulus_griseus_crigri
ENSPCIG00000030454	LSM7	99	98.020	ENSCGRG00000014355	-	97	98.020	Cricetulus_griseus_crigri
ENSPCIG00000030454	LSM7	100	96.078	ENSCSEG00000014900	lsm7	86	96.078	Cynoglossus_semilaevis
ENSPCIG00000030454	LSM7	99	97.030	ENSCVAG00000021091	lsm7	94	97.030	Cyprinodon_variegatus
ENSPCIG00000030454	LSM7	100	96.117	ENSDARG00000058328	lsm7	100	96.117	Danio_rerio
ENSPCIG00000030454	LSM7	100	97.059	ENSDORG00000024460	Lsm7	100	97.059	Dipodomys_ordii
ENSPCIG00000030454	LSM7	95	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSPCIG00000030454	LSM7	99	96.040	ENSETEG00000012788	LSM7	99	96.040	Echinops_telfairi
ENSPCIG00000030454	LSM7	100	85.437	ENSEBUG00000016992	lsm7	99	85.437	Eptatretus_burgeri
ENSPCIG00000030454	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSPCIG00000030454	LSM7	100	95.146	ENSECAG00000001440	LSM7	66	95.146	Equus_caballus
ENSPCIG00000030454	LSM7	100	98.058	ENSFCAG00000003445	LSM7	100	98.058	Felis_catus
ENSPCIG00000030454	LSM7	99	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSPCIG00000030454	LSM7	94	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSPCIG00000030454	LSM7	99	97.030	ENSFHEG00000006349	lsm7	90	97.030	Fundulus_heteroclitus
ENSPCIG00000030454	LSM7	99	94.059	ENSGMOG00000013320	lsm7	100	92.233	Gadus_morhua
ENSPCIG00000030454	LSM7	100	97.087	ENSGAFG00000013902	lsm7	100	97.087	Gambusia_affinis
ENSPCIG00000030454	LSM7	99	95.050	ENSGACG00000010390	lsm7	100	93.204	Gasterosteus_aculeatus
ENSPCIG00000030454	LSM7	100	99.029	ENSGGOG00000010172	LSM7	100	99.029	Gorilla_gorilla
ENSPCIG00000030454	LSM7	100	95.146	ENSHBUG00000004616	lsm7	100	95.146	Haplochromis_burtoni
ENSPCIG00000030454	LSM7	100	99.029	ENSHGLG00000010587	LSM7	100	99.029	Heterocephalus_glaber_female
ENSPCIG00000030454	LSM7	100	99.029	ENSHGLG00100000852	LSM7	100	99.029	Heterocephalus_glaber_male
ENSPCIG00000030454	LSM7	99	95.050	ENSHCOG00000020252	lsm7	100	95.050	Hippocampus_comes
ENSPCIG00000030454	LSM7	100	96.117	ENSIPUG00000024724	lsm7	100	96.117	Ictalurus_punctatus
ENSPCIG00000030454	LSM7	100	98.039	ENSSTOG00000028372	LSM7	100	98.039	Ictidomys_tridecemlineatus
ENSPCIG00000030454	LSM7	98	99.000	ENSJJAG00000001936	Lsm7	97	99.000	Jaculus_jaculus
ENSPCIG00000030454	LSM7	100	97.087	ENSKMAG00000022151	lsm7	100	97.087	Kryptolebias_marmoratus
ENSPCIG00000030454	LSM7	100	95.146	ENSLBEG00000005203	lsm7	100	95.146	Labrus_bergylta
ENSPCIG00000030454	LSM7	99	100.000	ENSLACG00000015700	LSM7	100	98.058	Latimeria_chalumnae
ENSPCIG00000030454	LSM7	99	99.010	ENSLOCG00000004356	lsm7	100	97.087	Lepisosteus_oculatus
ENSPCIG00000030454	LSM7	99	99.010	ENSLAFG00000029302	LSM7	98	99.010	Loxodonta_africana
ENSPCIG00000030454	LSM7	100	99.029	ENSMFAG00000044572	LSM7	100	99.029	Macaca_fascicularis
ENSPCIG00000030454	LSM7	100	99.029	ENSMMUG00000000452	LSM7	100	99.029	Macaca_mulatta
ENSPCIG00000030454	LSM7	100	99.029	ENSMNEG00000004393	LSM7	100	99.029	Macaca_nemestrina
ENSPCIG00000030454	LSM7	100	99.029	ENSMLEG00000030852	LSM7	100	99.029	Mandrillus_leucophaeus
ENSPCIG00000030454	LSM7	100	95.146	ENSMAMG00000005410	lsm7	100	95.146	Mastacembelus_armatus
ENSPCIG00000030454	LSM7	100	95.146	ENSMZEG00005028055	lsm7	100	95.146	Maylandia_zebra
ENSPCIG00000030454	LSM7	100	99.029	ENSMGAG00000000750	LSM7	89	99.029	Meleagris_gallopavo
ENSPCIG00000030454	LSM7	100	98.058	ENSMAUG00000009276	Lsm7	100	98.058	Mesocricetus_auratus
ENSPCIG00000030454	LSM7	100	99.029	ENSMICG00000028619	-	100	99.029	Microcebus_murinus
ENSPCIG00000030454	LSM7	100	98.058	ENSMICG00000009988	-	100	98.058	Microcebus_murinus
ENSPCIG00000030454	LSM7	100	98.058	ENSMOCG00000016925	Lsm7	100	98.058	Microtus_ochrogaster
ENSPCIG00000030454	LSM7	100	96.117	ENSMMOG00000019645	lsm7	98	96.117	Mola_mola
ENSPCIG00000030454	LSM7	100	100.000	ENSMODG00000004722	LSM7	100	100.000	Monodelphis_domestica
ENSPCIG00000030454	LSM7	100	95.146	ENSMALG00000014511	lsm7	79	95.146	Monopterus_albus
ENSPCIG00000030454	LSM7	99	98.039	MGP_CAROLIEiJ_G0015607	Lsm7	99	98.039	Mus_caroli
ENSPCIG00000030454	LSM7	99	98.039	ENSMUSG00000035215	Lsm7	99	98.039	Mus_musculus
ENSPCIG00000030454	LSM7	99	98.039	MGP_PahariEiJ_G0031020	Lsm7	99	98.039	Mus_pahari
ENSPCIG00000030454	LSM7	99	98.039	MGP_SPRETEiJ_G0016425	Lsm7	99	98.039	Mus_spretus
ENSPCIG00000030454	LSM7	99	93.137	ENSMLUG00000024002	-	94	93.137	Myotis_lucifugus
ENSPCIG00000030454	LSM7	99	98.020	ENSMLUG00000013097	-	100	96.117	Myotis_lucifugus
ENSPCIG00000030454	LSM7	100	97.087	ENSNGAG00000021637	Lsm7	100	97.087	Nannospalax_galili
ENSPCIG00000030454	LSM7	92	95.745	ENSNBRG00000001237	-	82	94.118	Neolamprologus_brichardi
ENSPCIG00000030454	LSM7	99	95.050	ENSNBRG00000015770	lsm7	87	95.050	Neolamprologus_brichardi
ENSPCIG00000030454	LSM7	100	99.029	ENSNLEG00000002265	LSM7	100	99.029	Nomascus_leucogenys
ENSPCIG00000030454	LSM7	100	78.641	ENSODEG00000008190	-	100	78.641	Octodon_degus
ENSPCIG00000030454	LSM7	100	92.233	ENSODEG00000018769	-	100	92.233	Octodon_degus
ENSPCIG00000030454	LSM7	100	99.029	ENSODEG00000013590	-	100	99.029	Octodon_degus
ENSPCIG00000030454	LSM7	100	95.146	ENSONIG00000001801	lsm7	89	95.146	Oreochromis_niloticus
ENSPCIG00000030454	LSM7	100	96.117	ENSORLG00000023951	lsm7	100	96.117	Oryzias_latipes
ENSPCIG00000030454	LSM7	100	96.117	ENSORLG00020022226	lsm7	100	96.117	Oryzias_latipes_hni
ENSPCIG00000030454	LSM7	99	96.040	ENSORLG00015020044	lsm7	94	96.040	Oryzias_latipes_hsok
ENSPCIG00000030454	LSM7	100	96.117	ENSOMEG00000012806	lsm7	100	96.117	Oryzias_melastigma
ENSPCIG00000030454	LSM7	100	87.379	ENSOGAG00000024373	-	100	87.379	Otolemur_garnettii
ENSPCIG00000030454	LSM7	99	97.030	ENSOGAG00000000144	-	99	97.030	Otolemur_garnettii
ENSPCIG00000030454	LSM7	99	99.010	ENSOARG00000014013	LSM7	100	97.087	Ovis_aries
ENSPCIG00000030454	LSM7	100	99.029	ENSPPAG00000026500	LSM7	100	99.029	Pan_paniscus
ENSPCIG00000030454	LSM7	100	98.058	ENSPPRG00000008624	LSM7	100	98.058	Panthera_pardus
ENSPCIG00000030454	LSM7	99	98.020	ENSPTIG00000016252	LSM7	98	98.020	Panthera_tigris_altaica
ENSPCIG00000030454	LSM7	100	99.029	ENSPTRG00000010233	LSM7	100	99.029	Pan_troglodytes
ENSPCIG00000030454	LSM7	100	99.029	ENSPANG00000020668	LSM7	100	99.029	Papio_anubis
ENSPCIG00000030454	LSM7	100	98.058	ENSPKIG00000011325	lsm7	100	98.058	Paramormyrops_kingsleyae
ENSPCIG00000030454	LSM7	99	99.010	ENSPSIG00000017149	LSM7	89	99.010	Pelodiscus_sinensis
ENSPCIG00000030454	LSM7	100	96.117	ENSPMGG00000006498	lsm7	100	96.117	Periophthalmus_magnuspinnatus
ENSPCIG00000030454	LSM7	99	96.040	ENSPFOG00000012467	lsm7	91	94.175	Poecilia_formosa
ENSPCIG00000030454	LSM7	99	96.040	ENSPLAG00000000252	lsm7	94	96.040	Poecilia_latipinna
ENSPCIG00000030454	LSM7	100	95.098	ENSPMEG00000000587	lsm7	94	96.040	Poecilia_mexicana
ENSPCIG00000030454	LSM7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSPCIG00000030454	LSM7	72	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSPCIG00000030454	LSM7	100	99.029	ENSPCOG00000017177	LSM7	100	99.029	Propithecus_coquereli
ENSPCIG00000030454	LSM7	100	95.146	ENSPNYG00000006938	lsm7	100	95.146	Pundamilia_nyererei
ENSPCIG00000030454	LSM7	100	96.117	ENSPNAG00000010141	lsm7	100	96.117	Pygocentrus_nattereri
ENSPCIG00000030454	LSM7	99	99.020	ENSRNOG00000019552	Lsm7	99	99.020	Rattus_norvegicus
ENSPCIG00000030454	LSM7	100	99.029	ENSRBIG00000035978	LSM7	100	99.029	Rhinopithecus_bieti
ENSPCIG00000030454	LSM7	100	99.029	ENSRROG00000034044	LSM7	100	99.029	Rhinopithecus_roxellana
ENSPCIG00000030454	LSM7	84	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSPCIG00000030454	LSM7	100	99.029	ENSSBOG00000034899	LSM7	100	99.029	Saimiri_boliviensis_boliviensis
ENSPCIG00000030454	LSM7	100	96.117	ENSSFOG00015006728	lsm7	100	96.117	Scleropages_formosus
ENSPCIG00000030454	LSM7	99	96.040	ENSSMAG00000004195	lsm7	93	96.040	Scophthalmus_maximus
ENSPCIG00000030454	LSM7	100	96.117	ENSSDUG00000001863	lsm7	100	96.117	Seriola_dumerili
ENSPCIG00000030454	LSM7	100	96.117	ENSSLDG00000016339	lsm7	100	96.117	Seriola_lalandi_dorsalis
ENSPCIG00000030454	LSM7	100	96.117	ENSSPAG00000015221	lsm7	100	96.117	Stegastes_partitus
ENSPCIG00000030454	LSM7	100	99.020	ENSSSCG00000013463	LSM7	100	99.020	Sus_scrofa
ENSPCIG00000030454	LSM7	99	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSPCIG00000030454	LSM7	100	96.117	ENSTRUG00000022913	lsm7	100	96.117	Takifugu_rubripes
ENSPCIG00000030454	LSM7	100	96.117	ENSTNIG00000015525	lsm7	100	96.117	Tetraodon_nigroviridis
ENSPCIG00000030454	LSM7	69	85.714	ENSTBEG00000016602	LSM7	100	85.714	Tupaia_belangeri
ENSPCIG00000030454	LSM7	99	98.020	ENSUAMG00000000912	LSM7	86	96.117	Ursus_americanus
ENSPCIG00000030454	LSM7	98	99.000	ENSUMAG00000006556	LSM7	78	99.000	Ursus_maritimus
ENSPCIG00000030454	LSM7	70	97.183	ENSVVUG00000002640	LSM7	65	97.183	Vulpes_vulpes
ENSPCIG00000030454	LSM7	99	96.040	ENSXETG00000022166	lsm7	100	96.040	Xenopus_tropicalis
ENSPCIG00000030454	LSM7	99	97.030	ENSXCOG00000002572	lsm7	100	96.078	Xiphophorus_couchianus
ENSPCIG00000030454	LSM7	100	97.087	ENSXMAG00000018630	lsm7	100	97.087	Xiphophorus_maculatus