EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000000918 (Gene tree)
Gene ID: 105824404
Gene Symbol: -
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Plus strand
Length: 20606 bases
Position: chrKQ027488.1:333434-354039
Accession: 105824404
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000000365	Smg4_UPF3	PF03467.15	3.4e-36	1	1
ENSPCOP00000000368	Smg4_UPF3	PF03467.15	3.7e-14	1	2
ENSPCOP00000000368	Smg4_UPF3	PF03467.15	3.7e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000001115	-	1332	XM_012661828	ENSPCOP00000000365	443 (aa)	XP_012517282	A0A2K6EF59
ENSPCOT00000001118	-	1233	-	ENSPCOP00000000368	410 (aa)	-	A0A2K6EF60

Gene Model

Click here to download ENSPCOG00000000918's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000000918's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000000918	-	55	47.619	ENSPCOG00000021960	UPF3B	72	46.045

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000000918	-	92	60.880	ENSMAUG00000017013	-	99	61.111	Mesocricetus_auratus
ENSPCOG00000000918	-	92	64.138	ENSPTIG00000015511	-	95	64.138	Panthera_tigris_altaica