EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCOG00000004741 (Gene tree)
Gene ID: 105821804
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Plus strand
Length: 29348 bases
Position: chrKQ025846.1:1829355-1858702
Accession: 105821804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000001540	EST1	PF10374.9	2.2e-24	1	1
ENSPCOP00000001552	EST1	PF10374.9	4.3e-21	1	1
ENSPCOP00000001540	EST1_DNA_bind	PF10373.9	5.5e-40	1	2
ENSPCOP00000001540	EST1_DNA_bind	PF10373.9	5.5e-40	2	2
ENSPCOP00000001552	EST1_DNA_bind	PF10373.9	4.5e-35	1	2
ENSPCOP00000001552	EST1_DNA_bind	PF10373.9	4.5e-35	2	2
ENSPCOP00000001552	PIN_4	PF13638.6	2.3e-05	1	1
ENSPCOP00000001540	PIN_4	PF13638.6	2.4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000005535	SMG5-202	2985	-	ENSPCOP00000001552	994 (aa)	-	A0A2K6EIL0
ENSPCOT00000005513	SMG5-201	4636	XM_012658598	ENSPCOP00000001540	1016 (aa)	XP_012514052	A0A2K6EIH9

Gene Model

Click here to download ENSPCOG00000004741's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000004741's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000004741	SMG5	100	97.343	ENSG00000198952	SMG5	100	97.343	Homo_sapiens
ENSPCOG00000004741	SMG5	99	67.783	ENSAPOG00000019690	smg5	93	77.882	Acanthochromis_polyacanthus
ENSPCOG00000004741	SMG5	98	92.749	ENSAMEG00000014458	SMG5	100	92.749	Ailuropoda_melanoleuca
ENSPCOG00000004741	SMG5	99	65.314	ENSACIG00000001353	smg5	99	66.346	Amphilophus_citrinellus
ENSPCOG00000004741	SMG5	98	64.897	ENSAOCG00000019483	smg5	93	78.860	Amphiprion_ocellaris
ENSPCOG00000004741	SMG5	98	66.139	ENSAPEG00000022949	smg5	93	78.622	Amphiprion_percula
ENSPCOG00000004741	SMG5	99	66.408	ENSATEG00000005348	smg5	99	67.153	Anabas_testudineus
ENSPCOG00000004741	SMG5	98	79.610	ENSAPLG00000010263	SMG5	100	79.317	Anas_platyrhynchos
ENSPCOG00000004741	SMG5	100	97.244	ENSANAG00000032899	SMG5	100	97.244	Aotus_nancymaae
ENSPCOG00000004741	SMG5	99	65.150	ENSACLG00000009311	smg5	99	66.635	Astatotilapia_calliptera
ENSPCOG00000004741	SMG5	51	59.341	ENSAMXG00000024616	smg5	99	62.591	Astyanax_mexicanus
ENSPCOG00000004741	SMG5	99	44.552	ENSBTAG00000021747	-	99	43.907	Bos_taurus
ENSPCOG00000004741	SMG5	100	95.571	ENSBTAG00000009435	SMG5	100	95.571	Bos_taurus
ENSPCOG00000004741	SMG5	100	97.244	ENSCJAG00000005684	SMG5	100	97.244	Callithrix_jacchus
ENSPCOG00000004741	SMG5	100	94.685	ENSCAFG00000016839	SMG5	100	93.996	Canis_familiaris
ENSPCOG00000004741	SMG5	100	94.685	ENSCAFG00020006061	SMG5	100	93.996	Canis_lupus_dingo
ENSPCOG00000004741	SMG5	100	95.571	ENSCHIG00000007709	SMG5	100	95.571	Capra_hircus
ENSPCOG00000004741	SMG5	99	45.123	ENSCHIG00000006323	-	99	43.848	Capra_hircus
ENSPCOG00000004741	SMG5	100	96.952	ENSTSYG00000004099	SMG5	100	96.952	Carlito_syrichta
ENSPCOG00000004741	SMG5	97	75.934	ENSCAPG00000003631	SMG5	100	76.514	Cavia_aperea
ENSPCOG00000004741	SMG5	100	95.285	ENSCPOG00000015696	SMG5	100	94.990	Cavia_porcellus
ENSPCOG00000004741	SMG5	100	97.244	ENSCCAG00000027409	SMG5	100	97.244	Cebus_capucinus
ENSPCOG00000004741	SMG5	100	97.539	ENSCATG00000030539	SMG5	100	97.539	Cercocebus_atys
ENSPCOG00000004741	SMG5	100	95.776	ENSCLAG00000003983	SMG5	100	95.678	Chinchilla_lanigera
ENSPCOG00000004741	SMG5	100	97.441	ENSCSAG00000002120	SMG5	100	97.441	Chlorocebus_sabaeus
ENSPCOG00000004741	SMG5	54	92.336	ENSCHOG00000008741	-	57	92.336	Choloepus_hoffmanni
ENSPCOG00000004741	SMG5	94	78.477	ENSCPBG00000025848	SMG5	100	79.006	Chrysemys_picta_bellii
ENSPCOG00000004741	SMG5	93	34.742	ENSCING00000008706	-	99	34.469	Ciona_intestinalis
ENSPCOG00000004741	SMG5	100	93.406	ENSCANG00000029208	SMG5	100	93.406	Colobus_angolensis_palliatus
ENSPCOG00000004741	SMG5	100	92.829	ENSCGRG00001006336	Smg5	100	92.534	Cricetulus_griseus_chok1gshd
ENSPCOG00000004741	SMG5	98	92.757	ENSCGRG00000005111	Smg5	100	92.447	Cricetulus_griseus_crigri
ENSPCOG00000004741	SMG5	99	65.524	ENSCSEG00000014220	smg5	99	65.554	Cynoglossus_semilaevis
ENSPCOG00000004741	SMG5	99	61.653	ENSCVAG00000000529	smg5	99	62.066	Cyprinodon_variegatus
ENSPCOG00000004741	SMG5	100	91.732	ENSDNOG00000000051	SMG5	100	91.732	Dasypus_novemcinctus
ENSPCOG00000004741	SMG5	92	36.982	ENSDNOG00000039862	-	100	35.873	Dasypus_novemcinctus
ENSPCOG00000004741	SMG5	100	94.008	ENSDORG00000010382	Smg5	100	93.320	Dipodomys_ordii
ENSPCOG00000004741	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSPCOG00000004741	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSPCOG00000004741	SMG5	90	47.084	ENSEBUG00000003739	smg5	98	47.078	Eptatretus_burgeri
ENSPCOG00000004741	SMG5	100	96.752	ENSEASG00005019122	SMG5	100	96.752	Equus_asinus_asinus
ENSPCOG00000004741	SMG5	100	96.752	ENSECAG00000001389	SMG5	100	96.752	Equus_caballus
ENSPCOG00000004741	SMG5	72	99.135	ENSEEUG00000012690	SMG5	73	99.135	Erinaceus_europaeus
ENSPCOG00000004741	SMG5	99	65.284	ENSELUG00000012585	smg5	99	65.634	Esox_lucius
ENSPCOG00000004741	SMG5	100	94.094	ENSFCAG00000011783	SMG5	100	93.314	Felis_catus
ENSPCOG00000004741	SMG5	58	82.638	ENSFALG00000001166	-	99	82.747	Ficedula_albicollis
ENSPCOG00000004741	SMG5	98	93.454	ENSFDAG00000017388	SMG5	100	93.353	Fukomys_damarensis
ENSPCOG00000004741	SMG5	97	62.475	ENSFHEG00000013939	smg5	95	68.827	Fundulus_heteroclitus
ENSPCOG00000004741	SMG5	99	78.496	ENSGALG00000029918	-	100	78.095	Gallus_gallus
ENSPCOG00000004741	SMG5	73	76.310	ENSGAFG00000021691	smg5	95	67.093	Gambusia_affinis
ENSPCOG00000004741	SMG5	99	60.647	ENSGACG00000013142	smg5	99	59.640	Gasterosteus_aculeatus
ENSPCOG00000004741	SMG5	100	80.437	ENSGAGG00000016131	SMG5	100	79.962	Gopherus_agassizii
ENSPCOG00000004741	SMG5	100	97.343	ENSGGOG00000010932	SMG5	100	97.343	Gorilla_gorilla
ENSPCOG00000004741	SMG5	99	64.774	ENSHBUG00000008654	smg5	99	65.682	Haplochromis_burtoni
ENSPCOG00000004741	SMG5	100	92.829	ENSHGLG00000019152	SMG5	100	93.026	Heterocephalus_glaber_female
ENSPCOG00000004741	SMG5	90	92.982	ENSHGLG00100015948	SMG5	99	93.202	Heterocephalus_glaber_male
ENSPCOG00000004741	SMG5	86	73.839	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSPCOG00000004741	SMG5	99	61.679	ENSIPUG00000006624	Smg5	99	62.157	Ictalurus_punctatus
ENSPCOG00000004741	SMG5	100	96.657	ENSSTOG00000001780	SMG5	100	96.657	Ictidomys_tridecemlineatus
ENSPCOG00000004741	SMG5	100	93.229	ENSJJAG00000022763	Smg5	100	92.738	Jaculus_jaculus
ENSPCOG00000004741	SMG5	51	58.791	ENSKMAG00000014586	smg5	99	61.264	Kryptolebias_marmoratus
ENSPCOG00000004741	SMG5	99	66.151	ENSLBEG00000002145	smg5	99	66.505	Labrus_bergylta
ENSPCOG00000004741	SMG5	100	64.672	ENSLACG00000010521	SMG5	100	64.862	Latimeria_chalumnae
ENSPCOG00000004741	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSPCOG00000004741	SMG5	100	94.390	ENSLAFG00000006241	SMG5	100	94.390	Loxodonta_africana
ENSPCOG00000004741	SMG5	100	97.441	ENSMFAG00000045357	SMG5	100	97.441	Macaca_fascicularis
ENSPCOG00000004741	SMG5	100	97.441	ENSMMUG00000000090	SMG5	100	97.441	Macaca_mulatta
ENSPCOG00000004741	SMG5	100	97.343	ENSMNEG00000044425	SMG5	100	97.343	Macaca_nemestrina
ENSPCOG00000004741	SMG5	100	91.275	ENSMLEG00000041192	SMG5	100	91.275	Mandrillus_leucophaeus
ENSPCOG00000004741	SMG5	99	60.823	ENSMAMG00000010683	smg5	58	55.935	Mastacembelus_armatus
ENSPCOG00000004741	SMG5	64	58.636	ENSMZEG00005016543	smg5	100	59.488	Maylandia_zebra
ENSPCOG00000004741	SMG5	99	64.196	ENSMZEG00005015815	smg5	99	65.010	Maylandia_zebra
ENSPCOG00000004741	SMG5	55	45.359	ENSMAUG00000000043	-	96	44.522	Mesocricetus_auratus
ENSPCOG00000004741	SMG5	100	91.847	ENSMAUG00000010381	Smg5	100	91.650	Mesocricetus_auratus
ENSPCOG00000004741	SMG5	100	98.622	ENSMICG00000002257	SMG5	100	98.622	Microcebus_murinus
ENSPCOG00000004741	SMG5	100	91.863	ENSMOCG00000016590	Smg5	100	91.275	Microtus_ochrogaster
ENSPCOG00000004741	SMG5	99	58.908	ENSMMOG00000017199	smg5	99	60.180	Mola_mola
ENSPCOG00000004741	SMG5	75	39.633	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSPCOG00000004741	SMG5	97	34.990	ENSMODG00000004511	-	99	34.257	Monodelphis_domestica
ENSPCOG00000004741	SMG5	93	37.561	ENSMODG00000004532	-	83	38.191	Monodelphis_domestica
ENSPCOG00000004741	SMG5	87	89.640	ENSMODG00000016901	SMG5	98	90.090	Monodelphis_domestica
ENSPCOG00000004741	SMG5	78	37.783	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSPCOG00000004741	SMG5	99	59.554	ENSMALG00000010375	smg5	55	54.207	Monopterus_albus
ENSPCOG00000004741	SMG5	100	92.633	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSPCOG00000004741	SMG5	100	92.731	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSPCOG00000004741	SMG5	100	92.640	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSPCOG00000004741	SMG5	100	92.534	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSPCOG00000004741	SMG5	94	92.947	ENSMPUG00000004546	SMG5	100	92.211	Mustela_putorius_furo
ENSPCOG00000004741	SMG5	100	94.423	ENSMLUG00000008518	SMG5	100	93.542	Myotis_lucifugus
ENSPCOG00000004741	SMG5	100	93.707	ENSNGAG00000020706	Smg5	100	93.707	Nannospalax_galili
ENSPCOG00000004741	SMG5	98	45.025	ENSNGAG00000012101	-	98	44.995	Nannospalax_galili
ENSPCOG00000004741	SMG5	96	63.535	ENSNBRG00000004332	smg5	98	64.286	Neolamprologus_brichardi
ENSPCOG00000004741	SMG5	100	97.244	ENSNLEG00000012439	SMG5	100	97.244	Nomascus_leucogenys
ENSPCOG00000004741	SMG5	100	87.709	ENSMEUG00000012834	SMG5	100	86.824	Notamacropus_eugenii
ENSPCOG00000004741	SMG5	100	94.291	ENSOPRG00000009152	SMG5	100	94.291	Ochotona_princeps
ENSPCOG00000004741	SMG5	100	95.079	ENSODEG00000012237	SMG5	100	95.079	Octodon_degus
ENSPCOG00000004741	SMG5	51	59.963	ENSONIG00000008632	smg5	99	61.443	Oreochromis_niloticus
ENSPCOG00000004741	SMG5	98	95.766	ENSOCUG00000012886	SMG5	100	95.766	Oryctolagus_cuniculus
ENSPCOG00000004741	SMG5	89	41.603	ENSOCUG00000023338	-	99	40.479	Oryctolagus_cuniculus
ENSPCOG00000004741	SMG5	99	60.811	ENSORLG00000016239	smg5	99	61.664	Oryzias_latipes
ENSPCOG00000004741	SMG5	99	64.648	ENSORLG00020013127	smg5	99	65.756	Oryzias_latipes_hni
ENSPCOG00000004741	SMG5	99	64.460	ENSORLG00015019014	smg5	99	65.564	Oryzias_latipes_hsok
ENSPCOG00000004741	SMG5	82	60.649	ENSOMEG00000021330	smg5	92	60.365	Oryzias_melastigma
ENSPCOG00000004741	SMG5	100	95.571	ENSOGAG00000004966	SMG5	100	95.571	Otolemur_garnettii
ENSPCOG00000004741	SMG5	100	95.669	ENSOARG00000005778	SMG5	100	95.669	Ovis_aries
ENSPCOG00000004741	SMG5	99	44.553	ENSOARG00000011963	-	99	43.872	Ovis_aries
ENSPCOG00000004741	SMG5	100	97.146	ENSPPAG00000011996	SMG5	100	97.146	Pan_paniscus
ENSPCOG00000004741	SMG5	98	93.851	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSPCOG00000004741	SMG5	99	85.871	ENSPTIG00000007892	SMG5	98	85.613	Panthera_tigris_altaica
ENSPCOG00000004741	SMG5	100	97.343	ENSPTRG00000023925	SMG5	100	97.343	Pan_troglodytes
ENSPCOG00000004741	SMG5	100	97.343	ENSPTRG00000049282	-	100	97.343	Pan_troglodytes
ENSPCOG00000004741	SMG5	100	97.539	ENSPANG00000011201	SMG5	100	97.539	Papio_anubis
ENSPCOG00000004741	SMG5	99	65.340	ENSPKIG00000009402	smg5	99	65.851	Paramormyrops_kingsleyae
ENSPCOG00000004741	SMG5	98	81.070	ENSPSIG00000015198	SMG5	100	80.872	Pelodiscus_sinensis
ENSPCOG00000004741	SMG5	99	60.275	ENSPMGG00000010465	smg5	99	59.761	Periophthalmus_magnuspinnatus
ENSPCOG00000004741	SMG5	100	93.124	ENSPEMG00000001819	Smg5	100	92.829	Peromyscus_maniculatus_bairdii
ENSPCOG00000004741	SMG5	56	46.235	ENSPEMG00000010022	-	95	45.361	Peromyscus_maniculatus_bairdii
ENSPCOG00000004741	SMG5	99	49.663	ENSPMAG00000000410	smg5	100	50.000	Petromyzon_marinus
ENSPCOG00000004741	SMG5	100	89.194	ENSPCIG00000018938	SMG5	100	89.587	Phascolarctos_cinereus
ENSPCOG00000004741	SMG5	51	60.595	ENSPFOG00000010191	smg5	99	60.846	Poecilia_formosa
ENSPCOG00000004741	SMG5	51	59.740	ENSPLAG00000009332	smg5	99	61.566	Poecilia_latipinna
ENSPCOG00000004741	SMG5	99	66.025	ENSPMEG00000014105	smg5	99	65.964	Poecilia_mexicana
ENSPCOG00000004741	SMG5	51	59.851	ENSPREG00000017713	smg5	99	62.196	Poecilia_reticulata
ENSPCOG00000004741	SMG5	100	97.441	ENSPPYG00000000723	SMG5	100	97.441	Pongo_abelii
ENSPCOG00000004741	SMG5	75	96.685	ENSPCAG00000008412	SMG5	81	96.685	Procavia_capensis
ENSPCOG00000004741	SMG5	100	86.122	ENSPVAG00000016748	SMG5	100	86.122	Pteropus_vampyrus
ENSPCOG00000004741	SMG5	99	60.035	ENSPNYG00000013397	smg5	99	61.313	Pundamilia_nyererei
ENSPCOG00000004741	SMG5	99	62.625	ENSPNAG00000028363	smg5	99	60.838	Pygocentrus_nattereri
ENSPCOG00000004741	SMG5	100	92.633	ENSRNOG00000019590	Smg5	100	92.338	Rattus_norvegicus
ENSPCOG00000004741	SMG5	100	97.244	ENSRBIG00000027428	SMG5	100	97.244	Rhinopithecus_bieti
ENSPCOG00000004741	SMG5	100	97.146	ENSRROG00000030035	SMG5	100	97.146	Rhinopithecus_roxellana
ENSPCOG00000004741	SMG5	100	97.441	ENSSBOG00000033339	SMG5	100	97.441	Saimiri_boliviensis_boliviensis
ENSPCOG00000004741	SMG5	64	38.596	ENSSHAG00000000935	-	96	39.634	Sarcophilus_harrisii
ENSPCOG00000004741	SMG5	88	39.895	ENSSHAG00000000561	-	87	39.895	Sarcophilus_harrisii
ENSPCOG00000004741	SMG5	99	34.139	ENSSHAG00000009572	-	99	32.271	Sarcophilus_harrisii
ENSPCOG00000004741	SMG5	98	88.589	ENSSHAG00000014163	SMG5	100	88.989	Sarcophilus_harrisii
ENSPCOG00000004741	SMG5	99	66.374	ENSSFOG00015024175	smg5	99	66.080	Scleropages_formosus
ENSPCOG00000004741	SMG5	99	60.622	ENSSMAG00000013059	smg5	92	78.910	Scophthalmus_maximus
ENSPCOG00000004741	SMG5	51	60.109	ENSSDUG00000007122	smg5	92	77.647	Seriola_dumerili
ENSPCOG00000004741	SMG5	99	60.924	ENSSLDG00000011418	smg5	92	78.385	Seriola_lalandi_dorsalis
ENSPCOG00000004741	SMG5	84	100.000	ENSSARG00000012484	SMG5	90	100.000	Sorex_araneus
ENSPCOG00000004741	SMG5	94	78.217	ENSSPUG00000002260	SMG5	100	77.305	Sphenodon_punctatus
ENSPCOG00000004741	SMG5	91	77.358	ENSSPAG00000014266	smg5	98	65.437	Stegastes_partitus
ENSPCOG00000004741	SMG5	100	97.244	ENSSSCG00000006490	-	100	97.263	Sus_scrofa
ENSPCOG00000004741	SMG5	99	74.877	ENSSSCG00000039308	-	100	75.074	Sus_scrofa
ENSPCOG00000004741	SMG5	99	81.009	ENSTGUG00000003748	-	100	80.762	Taeniopygia_guttata
ENSPCOG00000004741	SMG5	93	74.942	ENSTRUG00000012580	smg5	92	75.878	Takifugu_rubripes
ENSPCOG00000004741	SMG5	99	65.015	ENSTNIG00000010303	smg5	99	64.883	Tetraodon_nigroviridis
ENSPCOG00000004741	SMG5	60	99.507	ENSTBEG00000002777	SMG5	60	99.507	Tupaia_belangeri
ENSPCOG00000004741	SMG5	100	91.535	ENSTTRG00000001401	SMG5	100	91.535	Tursiops_truncatus
ENSPCOG00000004741	SMG5	100	93.504	ENSUAMG00000013721	SMG5	100	92.815	Ursus_americanus
ENSPCOG00000004741	SMG5	98	89.146	ENSUMAG00000018041	SMG5	99	86.680	Ursus_maritimus
ENSPCOG00000004741	SMG5	98	86.680	ENSVPAG00000009446	SMG5	99	86.680	Vicugna_pacos
ENSPCOG00000004741	SMG5	100	94.685	ENSVVUG00000005887	SMG5	100	93.996	Vulpes_vulpes
ENSPCOG00000004741	SMG5	78	66.583	ENSXETG00000033791	SMG5	99	65.826	Xenopus_tropicalis
ENSPCOG00000004741	SMG5	60	76.620	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSPCOG00000004741	SMG5	99	65.955	ENSXMAG00000013499	smg5	99	65.474	Xiphophorus_maculatus