EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000012698 (Gene tree)
Gene ID: 105815382
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 113378 bases
Position: chrKQ022958.1:5385194-5498571
Accession: 105815382
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000004407	R3H	PF01424.22	3.9e-11	1	1
ENSPCOP00000004402	R3H	PF01424.22	4.4e-11	1	1
ENSPCOP00000004404	R3H	PF01424.22	4.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000014528	R3HDM1-204	1191	-	ENSPCOP00000004409	396 (aa)	-	A0A2K6ERP7
ENSPCOT00000014512	R3HDM1-201	3093	XM_012650528	ENSPCOP00000004402	1030 (aa)	XP_012505982	A0A2K6ERP5
ENSPCOT00000014520	R3HDM1-202	3252	-	ENSPCOP00000004404	1083 (aa)	-	A0A2K6ERP2
ENSPCOT00000014523	R3HDM1-203	2874	XM_012650529	ENSPCOP00000004407	957 (aa)	XP_012505983	A0A2K6ERP9

Gene Model

Click here to download ENSPCOG00000012698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000012698's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000012698	R3HDM1	69	48.699	ENSPCOG00000018365	ARPP21	95	48.327
ENSPCOG00000012698	R3HDM1	99	47.586	ENSPCOG00000013201	R3HDM2	81	66.790

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000012698	R3HDM1	100	94.127	ENSG00000048991	R3HDM1	99	96.907	Homo_sapiens
ENSPCOG00000012698	R3HDM1	87	59.677	ENSAPOG00000020850	r3hdm1	92	59.677	Acanthochromis_polyacanthus
ENSPCOG00000012698	R3HDM1	100	93.811	ENSAMEG00000014886	R3HDM1	100	92.670	Ailuropoda_melanoleuca
ENSPCOG00000012698	R3HDM1	87	54.412	ENSAOCG00000005192	r3hdm1	87	62.763	Amphiprion_ocellaris
ENSPCOG00000012698	R3HDM1	87	59.677	ENSAPEG00000016108	r3hdm1	95	59.677	Amphiprion_percula
ENSPCOG00000012698	R3HDM1	87	59.892	ENSATEG00000000232	r3hdm1	99	45.499	Anabas_testudineus
ENSPCOG00000012698	R3HDM1	100	75.874	ENSAPLG00000015231	R3HDM1	100	76.534	Anas_platyrhynchos
ENSPCOG00000012698	R3HDM1	100	74.541	ENSACAG00000001676	R3HDM1	100	75.153	Anolis_carolinensis
ENSPCOG00000012698	R3HDM1	100	94.634	ENSANAG00000035334	R3HDM1	100	94.634	Aotus_nancymaae
ENSPCOG00000012698	R3HDM1	87	60.108	ENSACLG00000027282	r3hdm1	94	60.108	Astatotilapia_calliptera
ENSPCOG00000012698	R3HDM1	86	78.545	ENSAMXG00000003536	r3hdm1	85	78.467	Astyanax_mexicanus
ENSPCOG00000012698	R3HDM1	86	83.824	ENSAMXG00000012861	R3HDM1	87	80.496	Astyanax_mexicanus
ENSPCOG00000012698	R3HDM1	58	40.502	ENSAMXG00000020587	arpp21	60	48.441	Astyanax_mexicanus
ENSPCOG00000012698	R3HDM1	100	92.345	ENSBTAG00000013302	R3HDM1	100	88.938	Bos_taurus
ENSPCOG00000012698	R3HDM1	100	93.974	ENSCJAG00000011718	R3HDM1	100	93.974	Callithrix_jacchus
ENSPCOG00000012698	R3HDM1	100	94.300	ENSCAFG00000005075	R3HDM1	100	92.941	Canis_familiaris
ENSPCOG00000012698	R3HDM1	100	94.454	ENSCAFG00020016119	R3HDM1	100	93.025	Canis_lupus_dingo
ENSPCOG00000012698	R3HDM1	100	92.508	ENSCHIG00000020851	R3HDM1	100	91.403	Capra_hircus
ENSPCOG00000012698	R3HDM1	100	88.319	ENSCPOG00000012784	R3HDM1	100	91.379	Cavia_porcellus
ENSPCOG00000012698	R3HDM1	100	94.780	ENSCCAG00000027199	R3HDM1	100	94.625	Cebus_capucinus
ENSPCOG00000012698	R3HDM1	100	93.974	ENSCATG00000023642	R3HDM1	100	93.974	Cercocebus_atys
ENSPCOG00000012698	R3HDM1	100	87.247	ENSCLAG00000007962	R3HDM1	100	89.712	Chinchilla_lanigera
ENSPCOG00000012698	R3HDM1	100	88.714	ENSCSAG00000016356	R3HDM1	100	89.903	Chlorocebus_sabaeus
ENSPCOG00000012698	R3HDM1	77	93.939	ENSCHOG00000013638	R3HDM1	91	83.265	Choloepus_hoffmanni
ENSPCOG00000012698	R3HDM1	92	90.370	ENSCPBG00000009645	R3HDM1	99	90.370	Chrysemys_picta_bellii
ENSPCOG00000012698	R3HDM1	100	93.821	ENSCANG00000034748	R3HDM1	100	93.821	Colobus_angolensis_palliatus
ENSPCOG00000012698	R3HDM1	99	86.344	ENSCGRG00001012357	R3hdm1	97	86.520	Cricetulus_griseus_chok1gshd
ENSPCOG00000012698	R3HDM1	99	89.672	ENSCGRG00000012080	R3hdm1	100	88.272	Cricetulus_griseus_crigri
ENSPCOG00000012698	R3HDM1	79	67.972	ENSCSEG00000008944	r3hdm1	79	67.972	Cynoglossus_semilaevis
ENSPCOG00000012698	R3HDM1	79	69.675	ENSCVAG00000007582	r3hdm1	79	69.675	Cyprinodon_variegatus
ENSPCOG00000012698	R3HDM1	99	96.296	ENSDNOG00000000771	R3HDM1	100	90.712	Dasypus_novemcinctus
ENSPCOG00000012698	R3HDM1	94	95.941	ENSETEG00000013606	R3HDM1	100	80.508	Echinops_telfairi
ENSPCOG00000012698	R3HDM1	53	54.639	ENSEBUG00000014746	arpp21	93	44.516	Eptatretus_burgeri
ENSPCOG00000012698	R3HDM1	100	93.312	ENSEASG00005007392	R3HDM1	100	92.301	Equus_asinus_asinus
ENSPCOG00000012698	R3HDM1	100	93.801	ENSECAG00000019114	R3HDM1	100	92.572	Equus_caballus
ENSPCOG00000012698	R3HDM1	84	96.250	ENSEEUG00000012589	R3HDM1	91	79.596	Erinaceus_europaeus
ENSPCOG00000012698	R3HDM1	93	76.727	ENSELUG00000004909	R3HDM1	99	55.211	Esox_lucius
ENSPCOG00000012698	R3HDM1	94	76.923	ENSELUG00000014413	r3hdm1	88	75.593	Esox_lucius
ENSPCOG00000012698	R3HDM1	100	92.997	ENSFCAG00000027113	R3HDM1	100	92.217	Felis_catus
ENSPCOG00000012698	R3HDM1	74	68.873	ENSFALG00000013731	R3HDM1	72	69.106	Ficedula_albicollis
ENSPCOG00000012698	R3HDM1	100	86.140	ENSFDAG00000016478	R3HDM1	100	89.095	Fukomys_damarensis
ENSPCOG00000012698	R3HDM1	79	70.758	ENSFHEG00000018713	r3hdm1	81	70.758	Fundulus_heteroclitus
ENSPCOG00000012698	R3HDM1	50	80.827	ENSGMOG00000006042	-	74	64.348	Gadus_morhua
ENSPCOG00000012698	R3HDM1	86	85.978	ENSGALG00000012246	R3HDM1	96	85.926	Gallus_gallus
ENSPCOG00000012698	R3HDM1	79	71.119	ENSGAFG00000006203	r3hdm1	85	71.119	Gambusia_affinis
ENSPCOG00000012698	R3HDM1	90	62.162	ENSGACG00000014925	r3hdm1	92	62.162	Gasterosteus_aculeatus
ENSPCOG00000012698	R3HDM1	100	75.361	ENSGAGG00000007840	R3HDM1	100	75.000	Gopherus_agassizii
ENSPCOG00000012698	R3HDM1	100	93.322	ENSGGOG00000008156	R3HDM1	100	93.322	Gorilla_gorilla
ENSPCOG00000012698	R3HDM1	100	86.995	ENSHGLG00000015718	R3HDM1	100	89.095	Heterocephalus_glaber_female
ENSPCOG00000012698	R3HDM1	100	86.731	ENSHGLG00100003184	-	100	89.095	Heterocephalus_glaber_male
ENSPCOG00000012698	R3HDM1	100	70.295	ENSHGLG00100015374	-	100	70.295	Heterocephalus_glaber_male
ENSPCOG00000012698	R3HDM1	87	58.871	ENSHCOG00000013366	r3hdm1	91	59.677	Hippocampus_comes
ENSPCOG00000012698	R3HDM1	74	78.388	ENSIPUG00000001676	R3HDM1	85	78.309	Ictalurus_punctatus
ENSPCOG00000012698	R3HDM1	87	71.479	ENSIPUG00000013629	r3hdm1	90	73.529	Ictalurus_punctatus
ENSPCOG00000012698	R3HDM1	100	93.485	ENSSTOG00000007572	R3HDM1	100	92.127	Ictidomys_tridecemlineatus
ENSPCOG00000012698	R3HDM1	94	71.330	ENSLACG00000005334	R3HDM1	100	68.659	Latimeria_chalumnae
ENSPCOG00000012698	R3HDM1	100	64.064	ENSLOCG00000001641	r3hdm1	100	63.588	Lepisosteus_oculatus
ENSPCOG00000012698	R3HDM1	100	88.908	ENSLAFG00000009065	R3HDM1	100	88.908	Loxodonta_africana
ENSPCOG00000012698	R3HDM1	100	93.974	ENSMFAG00000030331	R3HDM1	100	93.974	Macaca_fascicularis
ENSPCOG00000012698	R3HDM1	100	93.964	ENSMMUG00000009844	R3HDM1	100	93.811	Macaca_mulatta
ENSPCOG00000012698	R3HDM1	100	93.801	ENSMNEG00000027793	R3HDM1	100	93.801	Macaca_nemestrina
ENSPCOG00000012698	R3HDM1	100	94.137	ENSMLEG00000043189	R3HDM1	100	94.137	Mandrillus_leucophaeus
ENSPCOG00000012698	R3HDM1	87	60.000	ENSMAMG00000004532	r3hdm1	92	56.538	Mastacembelus_armatus
ENSPCOG00000012698	R3HDM1	79	71.841	ENSMZEG00005003157	r3hdm1	82	71.841	Maylandia_zebra
ENSPCOG00000012698	R3HDM1	100	75.540	ENSMGAG00000012461	R3HDM1	100	75.450	Meleagris_gallopavo
ENSPCOG00000012698	R3HDM1	100	86.165	ENSMAUG00000010315	R3hdm1	100	87.654	Mesocricetus_auratus
ENSPCOG00000012698	R3HDM1	95	92.649	ENSMICG00000042655	-	100	92.920	Microcebus_murinus
ENSPCOG00000012698	R3HDM1	99	99.630	ENSMICG00000005900	-	100	95.285	Microcebus_murinus
ENSPCOG00000012698	R3HDM1	90	75.071	ENSMODG00000000923	R3HDM1	97	74.786	Monodelphis_domestica
ENSPCOG00000012698	R3HDM1	98	62.462	ENSMALG00000009000	r3hdm1	84	62.462	Monopterus_albus
ENSPCOG00000012698	R3HDM1	100	85.237	MGP_CAROLIEiJ_G0014543	R3hdm1	100	87.654	Mus_caroli
ENSPCOG00000012698	R3HDM1	100	85.325	ENSMUSG00000056211	R3hdm1	100	87.654	Mus_musculus
ENSPCOG00000012698	R3HDM1	100	85.062	MGP_PahariEiJ_G0027779	R3hdm1	100	87.449	Mus_pahari
ENSPCOG00000012698	R3HDM1	100	85.501	MGP_SPRETEiJ_G0015350	R3hdm1	100	87.860	Mus_spretus
ENSPCOG00000012698	R3HDM1	100	93.160	ENSMPUG00000002412	R3HDM1	100	92.398	Mustela_putorius_furo
ENSPCOG00000012698	R3HDM1	100	91.572	ENSMLUG00000013824	R3HDM1	100	90.614	Myotis_lucifugus
ENSPCOG00000012698	R3HDM1	100	94.300	ENSNLEG00000008622	R3HDM1	100	94.300	Nomascus_leucogenys
ENSPCOG00000012698	R3HDM1	83	75.519	ENSMEUG00000011784	R3HDM1	100	69.817	Notamacropus_eugenii
ENSPCOG00000012698	R3HDM1	100	86.180	ENSODEG00000008607	R3HDM1	100	89.712	Octodon_degus
ENSPCOG00000012698	R3HDM1	92	70.819	ENSONIG00000012017	r3hdm1	87	70.819	Oreochromis_niloticus
ENSPCOG00000012698	R3HDM1	100	78.218	ENSOANG00000007987	R3HDM1	100	78.578	Ornithorhynchus_anatinus
ENSPCOG00000012698	R3HDM1	89	90.844	ENSOCUG00000017366	R3HDM1	98	90.844	Oryctolagus_cuniculus
ENSPCOG00000012698	R3HDM1	87	57.487	ENSORLG00000004297	r3hdm1	90	57.487	Oryzias_latipes
ENSPCOG00000012698	R3HDM1	79	70.758	ENSORLG00015017355	r3hdm1	91	58.649	Oryzias_latipes_hsok
ENSPCOG00000012698	R3HDM1	99	99.259	ENSOGAG00000003136	R3HDM1	100	92.203	Otolemur_garnettii
ENSPCOG00000012698	R3HDM1	100	92.020	ENSOARG00000010788	R3HDM1	100	91.131	Ovis_aries
ENSPCOG00000012698	R3HDM1	100	93.669	ENSPPAG00000027858	R3HDM1	100	93.669	Pan_paniscus
ENSPCOG00000012698	R3HDM1	100	92.671	ENSPPRG00000002626	R3HDM1	100	92.671	Panthera_pardus
ENSPCOG00000012698	R3HDM1	100	92.834	ENSPTIG00000016581	R3HDM1	100	92.834	Panthera_tigris_altaica
ENSPCOG00000012698	R3HDM1	100	93.821	ENSPTRG00000012494	R3HDM1	100	93.669	Pan_troglodytes
ENSPCOG00000012698	R3HDM1	100	94.137	ENSPANG00000026448	R3HDM1	100	94.137	Papio_anubis
ENSPCOG00000012698	R3HDM1	87	79.705	ENSPKIG00000004328	r3hdm1	96	53.946	Paramormyrops_kingsleyae
ENSPCOG00000012698	R3HDM1	100	75.903	ENSPSIG00000012915	R3HDM1	100	75.903	Pelodiscus_sinensis
ENSPCOG00000012698	R3HDM1	100	86.555	ENSPEMG00000015187	R3hdm1	100	88.066	Peromyscus_maniculatus_bairdii
ENSPCOG00000012698	R3HDM1	84	64.912	ENSPMAG00000003369	-	98	40.095	Petromyzon_marinus
ENSPCOG00000012698	R3HDM1	100	83.471	ENSPCIG00000002491	R3HDM1	100	81.605	Phascolarctos_cinereus
ENSPCOG00000012698	R3HDM1	79	69.565	ENSPFOG00000015036	r3hdm1	82	69.565	Poecilia_formosa
ENSPCOG00000012698	R3HDM1	79	69.565	ENSPLAG00000018042	r3hdm1	81	69.565	Poecilia_latipinna
ENSPCOG00000012698	R3HDM1	79	69.565	ENSPMEG00000023947	r3hdm1	81	69.565	Poecilia_mexicana
ENSPCOG00000012698	R3HDM1	79	70.758	ENSPREG00000007902	r3hdm1	85	70.758	Poecilia_reticulata
ENSPCOG00000012698	R3HDM1	100	93.801	ENSPPYG00000012815	R3HDM1	100	91.584	Pongo_abelii
ENSPCOG00000012698	R3HDM1	100	79.382	ENSPCAG00000006208	R3HDM1	100	79.038	Procavia_capensis
ENSPCOG00000012698	R3HDM1	96	98.333	ENSPVAG00000006098	R3HDM1	100	83.363	Pteropus_vampyrus
ENSPCOG00000012698	R3HDM1	62	40.649	ENSPNAG00000004162	arpp21	63	43.443	Pygocentrus_nattereri
ENSPCOG00000012698	R3HDM1	86	79.779	ENSPNAG00000005436	R3HDM1	95	79.705	Pygocentrus_nattereri
ENSPCOG00000012698	R3HDM1	86	77.818	ENSPNAG00000013952	r3hdm1	85	77.737	Pygocentrus_nattereri
ENSPCOG00000012698	R3HDM1	100	84.886	ENSRNOG00000004099	R3hdm1	100	84.710	Rattus_norvegicus
ENSPCOG00000012698	R3HDM1	100	93.171	ENSRBIG00000033317	R3HDM1	99	98.889	Rhinopithecus_bieti
ENSPCOG00000012698	R3HDM1	100	94.137	ENSRROG00000034534	R3HDM1	100	93.984	Rhinopithecus_roxellana
ENSPCOG00000012698	R3HDM1	100	93.811	ENSSBOG00000020389	R3HDM1	100	93.811	Saimiri_boliviensis_boliviensis
ENSPCOG00000012698	R3HDM1	100	81.736	ENSSHAG00000016999	R3HDM1	100	81.826	Sarcophilus_harrisii
ENSPCOG00000012698	R3HDM1	100	54.400	ENSSFOG00015019851	-	97	57.224	Scleropages_formosus
ENSPCOG00000012698	R3HDM1	86	83.456	ENSSFOG00015014134	r3hdm1	87	83.395	Scleropages_formosus
ENSPCOG00000012698	R3HDM1	95	64.780	ENSSMAG00000001669	r3hdm1	99	44.125	Scophthalmus_maximus
ENSPCOG00000012698	R3HDM1	85	63.063	ENSSDUG00000010749	r3hdm1	91	57.364	Seriola_dumerili
ENSPCOG00000012698	R3HDM1	97	63.363	ENSSLDG00000004499	r3hdm1	83	63.363	Seriola_lalandi_dorsalis
ENSPCOG00000012698	R3HDM1	73	79.130	ENSSARG00000000352	-	69	79.130	Sorex_araneus
ENSPCOG00000012698	R3HDM1	100	77.457	ENSSPUG00000004167	R3HDM1	100	77.547	Sphenodon_punctatus
ENSPCOG00000012698	R3HDM1	87	59.517	ENSSPAG00000004648	r3hdm1	91	59.517	Stegastes_partitus
ENSPCOG00000012698	R3HDM1	100	93.475	ENSSSCG00000015692	R3HDM1	100	92.398	Sus_scrofa
ENSPCOG00000012698	R3HDM1	100	70.773	ENSTGUG00000011750	R3HDM1	100	70.863	Taeniopygia_guttata
ENSPCOG00000012698	R3HDM1	79	69.818	ENSTRUG00000011654	r3hdm1	80	69.818	Takifugu_rubripes
ENSPCOG00000012698	R3HDM1	80	70.714	ENSTNIG00000010362	r3hdm1	95	45.090	Tetraodon_nigroviridis
ENSPCOG00000012698	R3HDM1	100	84.816	ENSTTRG00000003935	R3HDM1	100	84.865	Tursiops_truncatus
ENSPCOG00000012698	R3HDM1	70	91.645	ENSUAMG00000024806	R3HDM1	99	88.787	Ursus_americanus
ENSPCOG00000012698	R3HDM1	100	91.470	ENSUMAG00000005552	R3HDM1	100	91.470	Ursus_maritimus
ENSPCOG00000012698	R3HDM1	98	93.704	ENSVPAG00000007333	R3HDM1	93	92.982	Vicugna_pacos
ENSPCOG00000012698	R3HDM1	100	94.137	ENSVVUG00000006457	R3HDM1	100	90.683	Vulpes_vulpes
ENSPCOG00000012698	R3HDM1	83	71.096	ENSXETG00000019330	r3hdm1	77	87.454	Xenopus_tropicalis
ENSPCOG00000012698	R3HDM1	69	50.667	ENSXCOG00000017448	r3hdm1	89	50.943	Xiphophorus_couchianus
ENSPCOG00000012698	R3HDM1	79	70.397	ENSXMAG00000007885	r3hdm1	79	70.397	Xiphophorus_maculatus