EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000012771 (Gene tree)
Gene ID: 105805993
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 14136 bases
Position: chrKQ017074.1:1266438-1280573
Accession: 105805993
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000004465	zf-CCCH	PF00642.24	3.7e-20	1	2
ENSPCOP00000004465	zf-CCCH	PF00642.24	3.7e-20	2	2
ENSPCOP00000004469	zf-CCCH	PF00642.24	5.3e-18	1	2
ENSPCOP00000004469	zf-CCCH	PF00642.24	5.3e-18	2	2
ENSPCOP00000004473	zf-CCCH	PF00642.24	1.5e-15	1	2
ENSPCOP00000004473	zf-CCCH	PF00642.24	1.5e-15	2	2
ENSPCOP00000004473	zf-CCHC	PF00098.23	3.4e-06	1	1
ENSPCOP00000004469	zf-CCHC	PF00098.23	4.5e-06	1	1
ENSPCOP00000004465	zf-CCHC	PF00098.23	4.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000014621	CPSF4-203	636	-	ENSPCOP00000004473	211 (aa)	-	A0A2K6ERW2
ENSPCOT00000014616	CPSF4-202	780	-	ENSPCOP00000004469	259 (aa)	-	A0A2K6ERW1
ENSPCOT00000014610	CPSF4-201	1416	XM_012638994	ENSPCOP00000004465	269 (aa)	XP_012494448	A0A2K6ERW9

Gene Model

Click here to download ENSPCOG00000012771's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000012771's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000012771	CPSF4	59	68.125	ENSPCOG00000021801	CPSF4L	91	68.125

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000012771	CPSF4	100	99.257	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSPCOG00000012771	CPSF4	70	74.725	ENSAPOG00000004921	cpsf4	100	74.725	Acanthochromis_polyacanthus
ENSPCOG00000012771	CPSF4	100	99.628	ENSAMEG00000006252	CPSF4	100	99.628	Ailuropoda_melanoleuca
ENSPCOG00000012771	CPSF4	100	79.554	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSPCOG00000012771	CPSF4	100	85.185	ENSAOCG00000019616	cpsf4	100	85.185	Amphiprion_ocellaris
ENSPCOG00000012771	CPSF4	100	85.185	ENSAPEG00000011679	cpsf4	100	85.185	Amphiprion_percula
ENSPCOG00000012771	CPSF4	100	84.559	ENSATEG00000007010	cpsf4	100	84.249	Anabas_testudineus
ENSPCOG00000012771	CPSF4	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSPCOG00000012771	CPSF4	100	99.257	ENSANAG00000021360	CPSF4	100	99.257	Aotus_nancymaae
ENSPCOG00000012771	CPSF4	100	83.704	ENSACLG00000010374	cpsf4	100	83.704	Astatotilapia_calliptera
ENSPCOG00000012771	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	85.978	Astyanax_mexicanus
ENSPCOG00000012771	CPSF4	100	89.591	ENSBTAG00000002090	CPSF4	100	89.591	Bos_taurus
ENSPCOG00000012771	CPSF4	100	99.257	ENSCJAG00000015826	CPSF4	100	99.257	Callithrix_jacchus
ENSPCOG00000012771	CPSF4	100	99.257	ENSCAFG00000015036	CPSF4	100	99.257	Canis_familiaris
ENSPCOG00000012771	CPSF4	100	96.183	ENSCAFG00020014462	CPSF4	100	96.183	Canis_lupus_dingo
ENSPCOG00000012771	CPSF4	100	99.257	ENSCHIG00000014313	CPSF4	100	99.257	Capra_hircus
ENSPCOG00000012771	CPSF4	100	99.052	ENSTSYG00000005712	-	100	99.052	Carlito_syrichta
ENSPCOG00000012771	CPSF4	100	88.732	ENSTSYG00000014604	-	100	88.732	Carlito_syrichta
ENSPCOG00000012771	CPSF4	85	90.055	ENSTSYG00000008195	-	100	90.055	Carlito_syrichta
ENSPCOG00000012771	CPSF4	85	99.543	ENSCAPG00000013881	CPSF4	97	92.245	Cavia_aperea
ENSPCOG00000012771	CPSF4	100	99.526	ENSCPOG00000001783	CPSF4	100	99.526	Cavia_porcellus
ENSPCOG00000012771	CPSF4	100	99.257	ENSCCAG00000028291	CPSF4	100	99.257	Cebus_capucinus
ENSPCOG00000012771	CPSF4	100	99.257	ENSCATG00000038440	CPSF4	100	99.257	Cercocebus_atys
ENSPCOG00000012771	CPSF4	100	99.257	ENSCLAG00000007050	CPSF4	100	99.257	Chinchilla_lanigera
ENSPCOG00000012771	CPSF4	100	99.257	ENSCSAG00000017795	CPSF4	100	99.257	Chlorocebus_sabaeus
ENSPCOG00000012771	CPSF4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSPCOG00000012771	CPSF4	83	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSPCOG00000012771	CPSF4	97	55.303	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSPCOG00000012771	CPSF4	96	53.710	ENSCSAVG00000011469	-	97	53.381	Ciona_savignyi
ENSPCOG00000012771	CPSF4	100	99.257	ENSCANG00000019384	CPSF4	100	99.257	Colobus_angolensis_palliatus
ENSPCOG00000012771	CPSF4	100	99.526	ENSCGRG00001024184	Cpsf4	100	99.526	Cricetulus_griseus_chok1gshd
ENSPCOG00000012771	CPSF4	100	99.628	ENSCGRG00000013892	Cpsf4	100	99.628	Cricetulus_griseus_crigri
ENSPCOG00000012771	CPSF4	100	84.834	ENSCSEG00000019055	cpsf4	100	84.834	Cynoglossus_semilaevis
ENSPCOG00000012771	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSPCOG00000012771	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSPCOG00000012771	CPSF4	100	99.628	ENSDNOG00000006344	CPSF4	100	99.628	Dasypus_novemcinctus
ENSPCOG00000012771	CPSF4	84	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSPCOG00000012771	CPSF4	100	54.452	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSPCOG00000012771	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSPCOG00000012771	CPSF4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSPCOG00000012771	CPSF4	100	90.335	ENSEASG00005002487	CPSF4	100	90.335	Equus_asinus_asinus
ENSPCOG00000012771	CPSF4	100	99.628	ENSECAG00000007525	CPSF4	100	99.628	Equus_caballus
ENSPCOG00000012771	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSPCOG00000012771	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	80.657	Esox_lucius
ENSPCOG00000012771	CPSF4	100	99.628	ENSFCAG00000015070	CPSF4	100	99.628	Felis_catus
ENSPCOG00000012771	CPSF4	60	61.728	ENSFALG00000012906	-	100	61.111	Ficedula_albicollis
ENSPCOG00000012771	CPSF4	100	85.874	ENSFALG00000013799	CPSF4	100	84.387	Ficedula_albicollis
ENSPCOG00000012771	CPSF4	90	98.765	ENSFDAG00000014092	CPSF4	100	98.765	Fukomys_damarensis
ENSPCOG00000012771	CPSF4	100	83.333	ENSFHEG00000010880	cpsf4	100	83.333	Fundulus_heteroclitus
ENSPCOG00000012771	CPSF4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSPCOG00000012771	CPSF4	100	85.874	ENSGALG00000004714	CPSF4	100	84.758	Gallus_gallus
ENSPCOG00000012771	CPSF4	99	38.421	ENSGALG00000004441	-	98	31.304	Gallus_gallus
ENSPCOG00000012771	CPSF4	100	82.593	ENSGAFG00000010580	cpsf4	100	82.593	Gambusia_affinis
ENSPCOG00000012771	CPSF4	100	77.491	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSPCOG00000012771	CPSF4	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSPCOG00000012771	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSPCOG00000012771	CPSF4	100	99.257	ENSGGOG00000015131	CPSF4	100	99.257	Gorilla_gorilla
ENSPCOG00000012771	CPSF4	100	83.704	ENSHBUG00000013699	cpsf4	100	83.704	Haplochromis_burtoni
ENSPCOG00000012771	CPSF4	100	99.052	ENSHGLG00000017150	CPSF4	100	99.052	Heterocephalus_glaber_female
ENSPCOG00000012771	CPSF4	87	95.763	ENSHGLG00100009215	-	100	96.591	Heterocephalus_glaber_male
ENSPCOG00000012771	CPSF4	100	71.090	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSPCOG00000012771	CPSF4	100	81.111	ENSHCOG00000004397	cpsf4	100	78.519	Hippocampus_comes
ENSPCOG00000012771	CPSF4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSPCOG00000012771	CPSF4	100	99.628	ENSSTOG00000001688	CPSF4	100	99.628	Ictidomys_tridecemlineatus
ENSPCOG00000012771	CPSF4	100	99.257	ENSJJAG00000019426	Cpsf4	100	99.257	Jaculus_jaculus
ENSPCOG00000012771	CPSF4	100	82.222	ENSKMAG00000015642	cpsf4	100	82.222	Kryptolebias_marmoratus
ENSPCOG00000012771	CPSF4	100	88.889	ENSLACG00000010938	CPSF4	100	88.889	Latimeria_chalumnae
ENSPCOG00000012771	CPSF4	100	61.111	ENSLACG00000018470	-	100	61.111	Latimeria_chalumnae
ENSPCOG00000012771	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSPCOG00000012771	CPSF4	100	99.257	ENSLAFG00000000159	CPSF4	100	99.257	Loxodonta_africana
ENSPCOG00000012771	CPSF4	100	99.257	ENSMFAG00000001462	CPSF4	100	99.257	Macaca_fascicularis
ENSPCOG00000012771	CPSF4	100	99.257	ENSMMUG00000019191	CPSF4	100	99.257	Macaca_mulatta
ENSPCOG00000012771	CPSF4	100	99.257	ENSMNEG00000032306	CPSF4	100	99.257	Macaca_nemestrina
ENSPCOG00000012771	CPSF4	100	99.257	ENSMLEG00000034721	CPSF4	100	99.257	Mandrillus_leucophaeus
ENSPCOG00000012771	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	83.516	Mastacembelus_armatus
ENSPCOG00000012771	CPSF4	100	83.704	ENSMZEG00005007515	cpsf4	100	83.704	Maylandia_zebra
ENSPCOG00000012771	CPSF4	87	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSPCOG00000012771	CPSF4	100	99.628	ENSMAUG00000021253	Cpsf4	100	99.628	Mesocricetus_auratus
ENSPCOG00000012771	CPSF4	100	99.628	ENSMICG00000017429	CPSF4	100	99.628	Microcebus_murinus
ENSPCOG00000012771	CPSF4	100	99.628	ENSMOCG00000014901	Cpsf4	100	99.628	Microtus_ochrogaster
ENSPCOG00000012771	CPSF4	100	84.834	ENSMMOG00000001813	cpsf4	100	84.834	Mola_mola
ENSPCOG00000012771	CPSF4	100	97.026	ENSMODG00000001367	CPSF4	100	97.026	Monodelphis_domestica
ENSPCOG00000012771	CPSF4	100	82.963	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSPCOG00000012771	CPSF4	100	99.628	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.628	Mus_caroli
ENSPCOG00000012771	CPSF4	100	99.628	ENSMUSG00000029625	Cpsf4	100	99.628	Mus_musculus
ENSPCOG00000012771	CPSF4	100	99.628	MGP_PahariEiJ_G0024581	Cpsf4	100	99.628	Mus_pahari
ENSPCOG00000012771	CPSF4	100	99.257	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.257	Mus_spretus
ENSPCOG00000012771	CPSF4	100	99.628	ENSMPUG00000016508	CPSF4	100	99.628	Mustela_putorius_furo
ENSPCOG00000012771	CPSF4	87	87.660	ENSMLUG00000010980	CPSF4	100	87.660	Myotis_lucifugus
ENSPCOG00000012771	CPSF4	100	99.257	ENSNGAG00000001567	Cpsf4	100	99.257	Nannospalax_galili
ENSPCOG00000012771	CPSF4	91	83.333	ENSNBRG00000003943	cpsf4	98	83.333	Neolamprologus_brichardi
ENSPCOG00000012771	CPSF4	100	99.052	ENSNLEG00000011074	CPSF4	100	99.052	Nomascus_leucogenys
ENSPCOG00000012771	CPSF4	100	97.026	ENSMEUG00000006955	CPSF4	100	97.026	Notamacropus_eugenii
ENSPCOG00000012771	CPSF4	100	98.885	ENSOPRG00000013663	CPSF4	100	98.885	Ochotona_princeps
ENSPCOG00000012771	CPSF4	100	74.725	ENSODEG00000009779	-	100	74.725	Octodon_degus
ENSPCOG00000012771	CPSF4	98	78.302	ENSODEG00000018283	-	89	78.302	Octodon_degus
ENSPCOG00000012771	CPSF4	100	99.628	ENSODEG00000011181	-	100	99.628	Octodon_degus
ENSPCOG00000012771	CPSF4	100	83.704	ENSONIG00000008495	cpsf4	100	83.704	Oreochromis_niloticus
ENSPCOG00000012771	CPSF4	100	54.945	ENSOANG00000009568	-	100	53.114	Ornithorhynchus_anatinus
ENSPCOG00000012771	CPSF4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSPCOG00000012771	CPSF4	100	98.885	ENSOCUG00000002437	CPSF4	70	98.885	Oryctolagus_cuniculus
ENSPCOG00000012771	CPSF4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSPCOG00000012771	CPSF4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSPCOG00000012771	CPSF4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSPCOG00000012771	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSPCOG00000012771	CPSF4	100	99.257	ENSOGAG00000010884	CPSF4	100	99.257	Otolemur_garnettii
ENSPCOG00000012771	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSPCOG00000012771	CPSF4	100	98.885	ENSPPAG00000043355	CPSF4	100	98.885	Pan_paniscus
ENSPCOG00000012771	CPSF4	100	99.628	ENSPPRG00000003134	CPSF4	100	99.628	Panthera_pardus
ENSPCOG00000012771	CPSF4	90	99.174	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSPCOG00000012771	CPSF4	100	98.885	ENSPTRG00000019453	CPSF4	100	98.885	Pan_troglodytes
ENSPCOG00000012771	CPSF4	100	99.257	ENSPANG00000023123	CPSF4	100	99.257	Papio_anubis
ENSPCOG00000012771	CPSF4	100	83.942	ENSPKIG00000014278	cpsf4	100	83.942	Paramormyrops_kingsleyae
ENSPCOG00000012771	CPSF4	84	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSPCOG00000012771	CPSF4	83	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSPCOG00000012771	CPSF4	100	75.096	ENSPMGG00000017735	cpsf4	100	73.946	Periophthalmus_magnuspinnatus
ENSPCOG00000012771	CPSF4	100	99.628	ENSPEMG00000004508	Cpsf4	100	99.628	Peromyscus_maniculatus_bairdii
ENSPCOG00000012771	CPSF4	100	97.026	ENSPCIG00000024776	CPSF4	100	97.026	Phascolarctos_cinereus
ENSPCOG00000012771	CPSF4	100	82.593	ENSPFOG00000014912	cpsf4	100	82.593	Poecilia_formosa
ENSPCOG00000012771	CPSF4	100	75.093	ENSPLAG00000009599	cpsf4	100	75.093	Poecilia_latipinna
ENSPCOG00000012771	CPSF4	100	82.593	ENSPMEG00000009790	cpsf4	100	82.593	Poecilia_mexicana
ENSPCOG00000012771	CPSF4	100	81.852	ENSPREG00000018166	cpsf4	100	78.889	Poecilia_reticulata
ENSPCOG00000012771	CPSF4	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSPCOG00000012771	CPSF4	100	98.513	ENSPCAG00000001892	CPSF4	100	98.513	Procavia_capensis
ENSPCOG00000012771	CPSF4	100	92.937	ENSPVAG00000007531	CPSF4	100	92.937	Pteropus_vampyrus
ENSPCOG00000012771	CPSF4	100	83.704	ENSPNYG00000018559	cpsf4	100	83.704	Pundamilia_nyererei
ENSPCOG00000012771	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSPCOG00000012771	CPSF4	100	99.526	ENSRNOG00000000985	Cpsf4	100	99.526	Rattus_norvegicus
ENSPCOG00000012771	CPSF4	87	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSPCOG00000012771	CPSF4	100	99.052	ENSRROG00000040431	CPSF4	100	99.052	Rhinopithecus_roxellana
ENSPCOG00000012771	CPSF4	100	99.257	ENSSBOG00000020493	CPSF4	100	99.257	Saimiri_boliviensis_boliviensis
ENSPCOG00000012771	CPSF4	100	97.026	ENSSHAG00000011533	CPSF4	100	97.026	Sarcophilus_harrisii
ENSPCOG00000012771	CPSF4	100	85.145	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSPCOG00000012771	CPSF4	100	79.182	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSPCOG00000012771	CPSF4	100	83.088	ENSSDUG00000018887	cpsf4	100	83.704	Seriola_dumerili
ENSPCOG00000012771	CPSF4	100	83.456	ENSSLDG00000019078	cpsf4	100	83.456	Seriola_lalandi_dorsalis
ENSPCOG00000012771	CPSF4	87	99.145	ENSSARG00000012416	CPSF4	100	99.145	Sorex_araneus
ENSPCOG00000012771	CPSF4	96	58.915	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSPCOG00000012771	CPSF4	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSPCOG00000012771	CPSF4	100	79.926	ENSSPAG00000006174	cpsf4	100	77.323	Stegastes_partitus
ENSPCOG00000012771	CPSF4	100	89.963	ENSSSCG00000026896	CPSF4	100	89.963	Sus_scrofa
ENSPCOG00000012771	CPSF4	100	84.871	ENSTGUG00000007552	CPSF4	100	83.395	Taeniopygia_guttata
ENSPCOG00000012771	CPSF4	100	80.952	ENSTRUG00000024220	cpsf4	100	80.952	Takifugu_rubripes
ENSPCOG00000012771	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSPCOG00000012771	CPSF4	87	90.171	ENSTBEG00000011406	CPSF4	100	90.171	Tupaia_belangeri
ENSPCOG00000012771	CPSF4	100	78.439	ENSTTRG00000003007	CPSF4	100	78.439	Tursiops_truncatus
ENSPCOG00000012771	CPSF4	92	89.069	ENSUAMG00000008051	CPSF4	85	89.069	Ursus_americanus
ENSPCOG00000012771	CPSF4	100	89.963	ENSUMAG00000009474	CPSF4	100	89.963	Ursus_maritimus
ENSPCOG00000012771	CPSF4	100	89.963	ENSVVUG00000008824	CPSF4	100	89.963	Vulpes_vulpes
ENSPCOG00000012771	CPSF4	99	61.194	ENSXETG00000004641	cpsf4l	99	61.194	Xenopus_tropicalis
ENSPCOG00000012771	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSPCOG00000012771	CPSF4	100	84.360	ENSXCOG00000016040	cpsf4	100	84.360	Xiphophorus_couchianus
ENSPCOG00000012771	CPSF4	100	82.593	ENSXMAG00000024670	cpsf4	100	82.593	Xiphophorus_maculatus