EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000013089 (Gene tree)
Gene ID: 105812893
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 117137 bases
Position: chrKQ022269.1:951700-1068836
Accession: 105812893
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000004755	XRN_N	PF03159.18	8.7e-97	1	1
ENSPCOP00000004753	XRN_N	PF03159.18	1.2e-96	1	1
ENSPCOP00000004749	XRN_N	PF03159.18	1.6e-96	1	1
ENSPCOP00000004751	XRN_N	PF03159.18	3.5e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000015059	XRN1-202	5241	XM_012647442	ENSPCOP00000004751	1706 (aa)	XP_012502896	A0A2K6ESR1
ENSPCOT00000015061	XRN1-203	3441	-	ENSPCOP00000004753	1146 (aa)	-	A0A2K6ESP9
ENSPCOT00000015057	XRN1-201	5507	XM_012647443	ENSPCOP00000004749	1694 (aa)	XP_012502897	A0A2K6ESN8
ENSPCOT00000015063	XRN1-204	2913	-	ENSPCOP00000004755	970 (aa)	-	A0A2K6ESP8

Gene Model

Click here to download ENSPCOG00000013089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000013089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000013089	XRN1	61	36.066	ENSPCOG00000016468	XRN2	71	36.662

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000013089	XRN1	99	97.087	ENSG00000114127	XRN1	100	98.182	Homo_sapiens
ENSPCOG00000013089	XRN1	99	77.778	ENSAPOG00000000622	xrn1	100	70.791	Acanthochromis_polyacanthus
ENSPCOG00000013089	XRN1	99	97.626	ENSAMEG00000012538	XRN1	100	91.820	Ailuropoda_melanoleuca
ENSPCOG00000013089	XRN1	99	77.655	ENSACIG00000001057	xrn1	99	72.439	Amphilophus_citrinellus
ENSPCOG00000013089	XRN1	99	77.901	ENSAOCG00000014097	xrn1	95	68.474	Amphiprion_ocellaris
ENSPCOG00000013089	XRN1	99	77.901	ENSAPEG00000006620	xrn1	91	72.231	Amphiprion_percula
ENSPCOG00000013089	XRN1	99	75.796	ENSATEG00000009752	xrn1	97	69.457	Anabas_testudineus
ENSPCOG00000013089	XRN1	96	88.411	ENSAPLG00000004905	XRN1	100	75.900	Anas_platyrhynchos
ENSPCOG00000013089	XRN1	99	85.397	ENSACAG00000004985	XRN1	100	72.594	Anolis_carolinensis
ENSPCOG00000013089	XRN1	99	97.297	ENSANAG00000029013	XRN1	100	95.797	Aotus_nancymaae
ENSPCOG00000013089	XRN1	99	76.704	ENSACLG00000004806	xrn1	97	61.882	Astatotilapia_calliptera
ENSPCOG00000013089	XRN1	99	73.651	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSPCOG00000013089	XRN1	99	97.006	ENSBTAG00000011524	XRN1	100	92.389	Bos_taurus
ENSPCOG00000013089	XRN1	93	52.853	WBGene00012730	xrn-1	83	38.043	Caenorhabditis_elegans
ENSPCOG00000013089	XRN1	99	97.173	ENSCJAG00000001872	XRN1	100	94.395	Callithrix_jacchus
ENSPCOG00000013089	XRN1	99	98.503	ENSCAFG00000007783	XRN1	100	92.970	Canis_familiaris
ENSPCOG00000013089	XRN1	99	98.503	ENSCAFG00020009120	XRN1	99	95.572	Canis_lupus_dingo
ENSPCOG00000013089	XRN1	99	97.006	ENSCHIG00000019192	XRN1	99	90.462	Capra_hircus
ENSPCOG00000013089	XRN1	99	96.734	ENSTSYG00000002705	XRN1	100	94.159	Carlito_syrichta
ENSPCOG00000013089	XRN1	97	74.180	ENSCAPG00000004604	-	99	76.949	Cavia_aperea
ENSPCOG00000013089	XRN1	99	97.626	ENSCCAG00000034800	XRN1	100	97.626	Cebus_capucinus
ENSPCOG00000013089	XRN1	99	97.440	ENSCATG00000041794	XRN1	100	94.985	Cercocebus_atys
ENSPCOG00000013089	XRN1	99	95.880	ENSCLAG00000001451	XRN1	100	95.872	Chinchilla_lanigera
ENSPCOG00000013089	XRN1	99	97.529	ENSCSAG00000011265	XRN1	100	95.023	Chlorocebus_sabaeus
ENSPCOG00000013089	XRN1	61	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSPCOG00000013089	XRN1	84	61.538	ENSCSAVG00000008584	-	98	45.055	Ciona_savignyi
ENSPCOG00000013089	XRN1	99	97.936	ENSCANG00000037495	XRN1	100	97.936	Colobus_angolensis_palliatus
ENSPCOG00000013089	XRN1	99	95.880	ENSCGRG00001019411	Xrn1	100	95.562	Cricetulus_griseus_chok1gshd
ENSPCOG00000013089	XRN1	99	95.880	ENSCGRG00000012464	Xrn1	100	95.562	Cricetulus_griseus_crigri
ENSPCOG00000013089	XRN1	99	77.619	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSPCOG00000013089	XRN1	99	75.994	ENSCVAG00000013089	xrn1	99	71.869	Cyprinodon_variegatus
ENSPCOG00000013089	XRN1	99	78.605	ENSDARG00000091652	xrn1	98	79.114	Danio_rerio
ENSPCOG00000013089	XRN1	99	95.707	ENSDORG00000013833	Xrn1	100	87.037	Dipodomys_ordii
ENSPCOG00000013089	XRN1	96	53.997	FBgn0020261	pcm	76	40.340	Drosophila_melanogaster
ENSPCOG00000013089	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSPCOG00000013089	XRN1	99	97.305	ENSEASG00005002687	XRN1	100	96.801	Equus_asinus_asinus
ENSPCOG00000013089	XRN1	99	97.605	ENSECAG00000008301	XRN1	100	92.857	Equus_caballus
ENSPCOG00000013089	XRN1	84	96.673	ENSEEUG00000011323	XRN1	92	83.089	Erinaceus_europaeus
ENSPCOG00000013089	XRN1	99	78.323	ENSELUG00000000169	xrn1	100	61.127	Esox_lucius
ENSPCOG00000013089	XRN1	99	95.808	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSPCOG00000013089	XRN1	99	88.871	ENSFALG00000007021	XRN1	100	74.733	Ficedula_albicollis
ENSPCOG00000013089	XRN1	99	95.872	ENSFDAG00000020494	XRN1	100	95.872	Fukomys_damarensis
ENSPCOG00000013089	XRN1	99	76.312	ENSGMOG00000006396	xrn1	83	67.699	Gadus_morhua
ENSPCOG00000013089	XRN1	99	89.030	ENSGALG00000002706	XRN1	100	75.183	Gallus_gallus
ENSPCOG00000013089	XRN1	99	76.349	ENSGACG00000014328	xrn1	100	60.034	Gasterosteus_aculeatus
ENSPCOG00000013089	XRN1	99	87.725	ENSGAGG00000017535	XRN1	99	78.180	Gopherus_agassizii
ENSPCOG00000013089	XRN1	99	96.911	ENSGGOG00000008047	XRN1	100	94.631	Gorilla_gorilla
ENSPCOG00000013089	XRN1	99	75.119	ENSHBUG00000005908	xrn1	98	72.485	Haplochromis_burtoni
ENSPCOG00000013089	XRN1	99	96.488	ENSHGLG00000014476	XRN1	100	96.488	Heterocephalus_glaber_female
ENSPCOG00000013089	XRN1	99	96.488	ENSHGLG00100015130	XRN1	100	96.488	Heterocephalus_glaber_male
ENSPCOG00000013089	XRN1	99	77.031	ENSHCOG00000014062	xrn1	98	70.476	Hippocampus_comes
ENSPCOG00000013089	XRN1	99	78.889	ENSIPUG00000015229	xrn1	99	62.464	Ictalurus_punctatus
ENSPCOG00000013089	XRN1	99	97.412	ENSSTOG00000013552	XRN1	99	97.456	Ictidomys_tridecemlineatus
ENSPCOG00000013089	XRN1	97	95.127	ENSJJAG00000010863	Xrn1	100	95.127	Jaculus_jaculus
ENSPCOG00000013089	XRN1	99	77.636	ENSKMAG00000021356	xrn1	94	76.000	Kryptolebias_marmoratus
ENSPCOG00000013089	XRN1	99	77.107	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSPCOG00000013089	XRN1	99	83.651	ENSLACG00000009020	XRN1	100	69.498	Latimeria_chalumnae
ENSPCOG00000013089	XRN1	99	81.675	ENSLOCG00000007944	xrn1	100	65.708	Lepisosteus_oculatus
ENSPCOG00000013089	XRN1	99	96.661	ENSLAFG00000015426	XRN1	100	96.165	Loxodonta_africana
ENSPCOG00000013089	XRN1	99	97.529	ENSMFAG00000032599	XRN1	100	95.103	Macaca_fascicularis
ENSPCOG00000013089	XRN1	99	97.440	ENSMMUG00000014038	XRN1	100	95.044	Macaca_mulatta
ENSPCOG00000013089	XRN1	99	97.264	ENSMNEG00000034217	XRN1	100	94.867	Macaca_nemestrina
ENSPCOG00000013089	XRN1	99	78.323	ENSMAMG00000013219	xrn1	94	76.495	Mastacembelus_armatus
ENSPCOG00000013089	XRN1	99	76.619	ENSMZEG00005015099	xrn1	97	61.765	Maylandia_zebra
ENSPCOG00000013089	XRN1	97	84.818	ENSMGAG00000006333	XRN1	100	75.233	Meleagris_gallopavo
ENSPCOG00000013089	XRN1	100	97.661	ENSMICG00000048948	XRN1	100	97.661	Microcebus_murinus
ENSPCOG00000013089	XRN1	99	94.427	ENSMOCG00000008665	Xrn1	100	94.427	Microtus_ochrogaster
ENSPCOG00000013089	XRN1	54	68.081	ENSMMOG00000020896	-	96	67.897	Mola_mola
ENSPCOG00000013089	XRN1	99	90.026	ENSMODG00000021236	XRN1	100	82.253	Monodelphis_domestica
ENSPCOG00000013089	XRN1	99	70.794	ENSMALG00000004098	xrn1	100	56.986	Monopterus_albus
ENSPCOG00000013089	XRN1	99	95.145	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSPCOG00000013089	XRN1	99	95.246	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSPCOG00000013089	XRN1	99	95.246	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSPCOG00000013089	XRN1	99	95.246	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSPCOG00000013089	XRN1	99	98.204	ENSMPUG00000012040	XRN1	100	93.677	Mustela_putorius_furo
ENSPCOG00000013089	XRN1	99	95.234	ENSMLUG00000016885	XRN1	100	89.094	Myotis_lucifugus
ENSPCOG00000013089	XRN1	99	92.946	ENSNGAG00000023964	Xrn1	100	92.946	Nannospalax_galili
ENSPCOG00000013089	XRN1	99	97.306	ENSNLEG00000004726	XRN1	100	94.926	Nomascus_leucogenys
ENSPCOG00000013089	XRN1	80	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSPCOG00000013089	XRN1	74	95.652	ENSOPRG00000007337	-	78	84.480	Ochotona_princeps
ENSPCOG00000013089	XRN1	99	77.532	ENSONIG00000016673	xrn1	99	64.603	Oreochromis_niloticus
ENSPCOG00000013089	XRN1	87	87.776	ENSOANG00000006735	XRN1	100	77.448	Ornithorhynchus_anatinus
ENSPCOG00000013089	XRN1	99	97.352	ENSOCUG00000001861	XRN1	100	90.774	Oryctolagus_cuniculus
ENSPCOG00000013089	XRN1	99	78.391	ENSORLG00000013005	xrn1	100	60.939	Oryzias_latipes
ENSPCOG00000013089	XRN1	99	79.048	ENSORLG00020005559	xrn1	100	61.818	Oryzias_latipes_hni
ENSPCOG00000013089	XRN1	99	78.571	ENSORLG00015022523	xrn1	100	61.455	Oryzias_latipes_hsok
ENSPCOG00000013089	XRN1	99	78.060	ENSOMEG00000015397	xrn1	99	72.698	Oryzias_melastigma
ENSPCOG00000013089	XRN1	99	95.882	ENSOGAG00000000170	XRN1	100	93.322	Otolemur_garnettii
ENSPCOG00000013089	XRN1	99	97.006	ENSOARG00000006343	XRN1	99	92.907	Ovis_aries
ENSPCOG00000013089	XRN1	99	96.999	ENSPPAG00000010180	XRN1	100	94.454	Pan_paniscus
ENSPCOG00000013089	XRN1	99	97.605	ENSPPRG00000007125	XRN1	100	93.632	Panthera_pardus
ENSPCOG00000013089	XRN1	99	97.605	ENSPTIG00000021081	XRN1	100	93.632	Panthera_tigris_altaica
ENSPCOG00000013089	XRN1	99	96.999	ENSPTRG00000015482	XRN1	100	94.572	Pan_troglodytes
ENSPCOG00000013089	XRN1	99	97.440	ENSPANG00000010638	XRN1	100	94.926	Papio_anubis
ENSPCOG00000013089	XRN1	99	87.639	ENSPSIG00000018050	XRN1	100	77.213	Pelodiscus_sinensis
ENSPCOG00000013089	XRN1	99	74.380	ENSPMGG00000002648	xrn1	98	78.022	Periophthalmus_magnuspinnatus
ENSPCOG00000013089	XRN1	99	95.253	ENSPEMG00000020610	Xrn1	100	95.253	Peromyscus_maniculatus_bairdii
ENSPCOG00000013089	XRN1	93	55.368	ENSPMAG00000002975	xrn1	91	78.161	Petromyzon_marinus
ENSPCOG00000013089	XRN1	99	90.419	ENSPCIG00000028735	XRN1	100	89.360	Phascolarctos_cinereus
ENSPCOG00000013089	XRN1	99	77.480	ENSPFOG00000013932	xrn1	99	64.747	Poecilia_formosa
ENSPCOG00000013089	XRN1	99	77.848	ENSPLAG00000021653	xrn1	99	64.313	Poecilia_latipinna
ENSPCOG00000013089	XRN1	99	77.567	ENSPMEG00000003076	xrn1	95	64.717	Poecilia_mexicana
ENSPCOG00000013089	XRN1	99	77.287	ENSPREG00000021147	xrn1	100	60.897	Poecilia_reticulata
ENSPCOG00000013089	XRN1	99	97.087	ENSPPYG00000014172	XRN1	100	94.552	Pongo_abelii
ENSPCOG00000013089	XRN1	97	89.060	ENSPCAG00000005638	XRN1	99	82.078	Procavia_capensis
ENSPCOG00000013089	XRN1	99	96.084	ENSPVAG00000016265	XRN1	96	92.028	Pteropus_vampyrus
ENSPCOG00000013089	XRN1	99	77.021	ENSPNYG00000010570	xrn1	97	62.201	Pundamilia_nyererei
ENSPCOG00000013089	XRN1	99	75.829	ENSPNAG00000023531	xrn1	97	60.960	Pygocentrus_nattereri
ENSPCOG00000013089	XRN1	99	94.929	ENSRNOG00000042951	Xrn1	100	87.348	Rattus_norvegicus
ENSPCOG00000013089	XRN1	99	96.999	ENSRBIG00000041227	XRN1	100	94.204	Rhinopithecus_bieti
ENSPCOG00000013089	XRN1	95	54.768	YGL173C	XRN1	73	54.768	Saccharomyces_cerevisiae
ENSPCOG00000013089	XRN1	99	96.996	ENSSBOG00000029561	XRN1	100	94.435	Saimiri_boliviensis_boliviensis
ENSPCOG00000013089	XRN1	97	89.801	ENSSHAG00000016207	XRN1	100	81.517	Sarcophilus_harrisii
ENSPCOG00000013089	XRN1	99	77.901	ENSSFOG00015024211	xrn1	98	62.411	Scleropages_formosus
ENSPCOG00000013089	XRN1	99	79.239	ENSSMAG00000016534	xrn1	94	72.097	Scophthalmus_maximus
ENSPCOG00000013089	XRN1	99	78.730	ENSSDUG00000010306	xrn1	97	72.068	Seriola_dumerili
ENSPCOG00000013089	XRN1	99	78.730	ENSSLDG00000021543	xrn1	100	70.483	Seriola_lalandi_dorsalis
ENSPCOG00000013089	XRN1	89	91.556	ENSSARG00000007741	-	83	84.607	Sorex_araneus
ENSPCOG00000013089	XRN1	50	76.065	ENSSPAG00000009856	-	96	76.268	Stegastes_partitus
ENSPCOG00000013089	XRN1	99	88.871	ENSTGUG00000008498	XRN1	100	76.959	Taeniopygia_guttata
ENSPCOG00000013089	XRN1	99	77.157	ENSTRUG00000004895	xrn1	99	75.101	Takifugu_rubripes
ENSPCOG00000013089	XRN1	96	76.151	ENSTNIG00000017615	xrn1	96	59.976	Tetraodon_nigroviridis
ENSPCOG00000013089	XRN1	99	86.443	ENSTBEG00000003256	XRN1	84	97.035	Tupaia_belangeri
ENSPCOG00000013089	XRN1	99	97.289	ENSTTRG00000012914	XRN1	100	88.811	Tursiops_truncatus
ENSPCOG00000013089	XRN1	99	98.503	ENSUAMG00000001608	XRN1	99	94.857	Ursus_americanus
ENSPCOG00000013089	XRN1	99	98.503	ENSUMAG00000013625	XRN1	100	94.441	Ursus_maritimus
ENSPCOG00000013089	XRN1	99	96.672	ENSVPAG00000004690	XRN1	100	90.861	Vicugna_pacos
ENSPCOG00000013089	XRN1	99	98.503	ENSVVUG00000024461	XRN1	99	98.037	Vulpes_vulpes
ENSPCOG00000013089	XRN1	99	82.622	ENSXETG00000000619	xrn1	97	88.441	Xenopus_tropicalis
ENSPCOG00000013089	XRN1	99	77.742	ENSXCOG00000007917	xrn1	95	62.940	Xiphophorus_couchianus
ENSPCOG00000013089	XRN1	99	76.471	ENSXMAG00000018320	xrn1	98	71.720	Xiphophorus_maculatus