EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000014231 (Gene tree)
Gene ID: 105808947
Gene Symbol: SNRPN
Alias: HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN
Full Name: SNRPN upstream reading frame
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Plus strand
Length: 23847 bases
Position: chrKQ021336.1:4999103-5022949
Accession: 105808948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000006220	LSM	PF01423.22	7.9e-20	1	1
ENSPCOP00000006223	LSM	PF01423.22	9.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000016736	SNRPN-201	1330	XM_012642704	ENSPCOP00000006220	240 (aa)	XP_012498158	A0A2K6EWV8
ENSPCOT00000016739	SNRPN-202	816	-	ENSPCOP00000006223	271 (aa)	-	A0A2K6EWY6

Gene Model

Click here to download ENSPCOG00000014231's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000014231's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000014231	SNRPN	92	92.760	ENSPCOG00000013686	SNRPB	99	92.544

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000014231	SNRPN	100	100.000	ENSG00000128739	SNRPN	100	100.000	Homo_sapiens
ENSPCOG00000014231	SNRPN	99	99.582	ENSAMEG00000007034	SNRPN	98	99.582	Ailuropoda_melanoleuca
ENSPCOG00000014231	SNRPN	100	100.000	ENSANAG00000034241	SNRPN	100	100.000	Aotus_nancymaae
ENSPCOG00000014231	SNRPN	100	98.750	ENSBTAG00000008251	SNRPN	100	98.750	Bos_taurus
ENSPCOG00000014231	SNRPN	95	99.561	ENSCJAG00000042622	-	96	99.127	Callithrix_jacchus
ENSPCOG00000014231	SNRPN	100	100.000	ENSCJAG00000003759	-	100	100.000	Callithrix_jacchus
ENSPCOG00000014231	SNRPN	100	99.583	ENSCAFG00000010127	SNRPN	100	99.583	Canis_familiaris
ENSPCOG00000014231	SNRPN	100	99.583	ENSCAFG00020024075	SNRPN	100	99.583	Canis_lupus_dingo
ENSPCOG00000014231	SNRPN	100	98.750	ENSCHIG00000017477	SNRPN	100	98.750	Capra_hircus
ENSPCOG00000014231	SNRPN	100	100.000	ENSTSYG00000005248	SNRPN	100	100.000	Carlito_syrichta
ENSPCOG00000014231	SNRPN	100	100.000	ENSCAPG00000003047	SNRPN	100	100.000	Cavia_aperea
ENSPCOG00000014231	SNRPN	100	100.000	ENSCPOG00000020270	SNRPN	100	100.000	Cavia_porcellus
ENSPCOG00000014231	SNRPN	100	100.000	ENSCCAG00000024231	SNRPN	100	100.000	Cebus_capucinus
ENSPCOG00000014231	SNRPN	100	100.000	ENSCATG00000032518	SNRPN	100	100.000	Cercocebus_atys
ENSPCOG00000014231	SNRPN	100	100.000	ENSCLAG00000011376	SNRPN	100	100.000	Chinchilla_lanigera
ENSPCOG00000014231	SNRPN	100	100.000	ENSCSAG00000006406	SNRPN	100	100.000	Chlorocebus_sabaeus
ENSPCOG00000014231	SNRPN	98	98.718	ENSCHOG00000001846	SNRPN	88	98.718	Choloepus_hoffmanni
ENSPCOG00000014231	SNRPN	100	100.000	ENSCANG00000041156	SNRPN	100	100.000	Colobus_angolensis_palliatus
ENSPCOG00000014231	SNRPN	100	99.583	ENSCGRG00001004136	Snrpn	100	99.583	Cricetulus_griseus_chok1gshd
ENSPCOG00000014231	SNRPN	100	99.167	ENSCGRG00000001621	Snrpn	100	99.167	Cricetulus_griseus_crigri
ENSPCOG00000014231	SNRPN	72	92.486	ENSCVAG00000014193	SNRPN	69	92.857	Cyprinodon_variegatus
ENSPCOG00000014231	SNRPN	99	99.163	ENSDNOG00000037060	SNRPN	98	99.163	Dasypus_novemcinctus
ENSPCOG00000014231	SNRPN	100	99.583	ENSDORG00000004527	Snrpn	100	99.583	Dipodomys_ordii
ENSPCOG00000014231	SNRPN	100	99.583	ENSEASG00005017871	SNRPN	100	99.583	Equus_asinus_asinus
ENSPCOG00000014231	SNRPN	100	99.583	ENSECAG00000018148	SNRPN	100	99.583	Equus_caballus
ENSPCOG00000014231	SNRPN	99	98.745	ENSEEUG00000007440	-	100	98.745	Erinaceus_europaeus
ENSPCOG00000014231	SNRPN	100	99.583	ENSFCAG00000022298	-	100	99.583	Felis_catus
ENSPCOG00000014231	SNRPN	100	99.583	ENSFDAG00000016578	-	100	99.583	Fukomys_damarensis
ENSPCOG00000014231	SNRPN	76	85.792	ENSFDAG00000010528	-	86	85.792	Fukomys_damarensis
ENSPCOG00000014231	SNRPN	74	76.836	ENSGMOG00000018161	SNRPN	74	76.190	Gadus_morhua
ENSPCOG00000014231	SNRPN	100	100.000	ENSGGOG00000003988	SNRPN	100	100.000	Gorilla_gorilla
ENSPCOG00000014231	SNRPN	90	73.488	ENSGGOG00000024469	-	69	83.942	Gorilla_gorilla
ENSPCOG00000014231	SNRPN	90	80.930	ENSHGLG00000020936	-	88	79.812	Heterocephalus_glaber_female
ENSPCOG00000014231	SNRPN	100	85.417	ENSHGLG00000002327	-	95	85.526	Heterocephalus_glaber_female
ENSPCOG00000014231	SNRPN	100	100.000	ENSHGLG00000011924	SNRPN	100	100.000	Heterocephalus_glaber_female
ENSPCOG00000014231	SNRPN	89	91.549	ENSHGLG00000019812	-	95	91.667	Heterocephalus_glaber_female
ENSPCOG00000014231	SNRPN	100	82.917	ENSHGLG00100004881	-	95	83.772	Heterocephalus_glaber_male
ENSPCOG00000014231	SNRPN	100	100.000	ENSHGLG00100016559	SNRPN	100	100.000	Heterocephalus_glaber_male
ENSPCOG00000014231	SNRPN	89	91.549	ENSHGLG00100021056	-	95	91.667	Heterocephalus_glaber_male
ENSPCOG00000014231	SNRPN	100	100.000	ENSSTOG00000001339	SNRPN	100	100.000	Ictidomys_tridecemlineatus
ENSPCOG00000014231	SNRPN	99	99.582	ENSLAFG00000009458	SNRPN	99	99.582	Loxodonta_africana
ENSPCOG00000014231	SNRPN	100	100.000	ENSMFAG00000042235	SNRPN	100	100.000	Macaca_fascicularis
ENSPCOG00000014231	SNRPN	100	100.000	ENSMMUG00000023139	SNURF	100	100.000	Macaca_mulatta
ENSPCOG00000014231	SNRPN	100	100.000	ENSMNEG00000031291	SNRPN	100	100.000	Macaca_nemestrina
ENSPCOG00000014231	SNRPN	100	100.000	ENSMLEG00000038837	SNRPN	100	100.000	Mandrillus_leucophaeus
ENSPCOG00000014231	SNRPN	92	85.909	ENSMGAG00000008696	SNRPN	95	85.965	Meleagris_gallopavo
ENSPCOG00000014231	SNRPN	100	100.000	ENSMAUG00000000051	Snrpn	100	100.000	Mesocricetus_auratus
ENSPCOG00000014231	SNRPN	100	100.000	ENSMICG00000042356	SNRPN	100	100.000	Microcebus_murinus
ENSPCOG00000014231	SNRPN	100	100.000	ENSMOCG00000015350	Snrpn	100	100.000	Microtus_ochrogaster
ENSPCOG00000014231	SNRPN	92	94.118	ENSMODG00000013926	-	95	93.860	Monodelphis_domestica
ENSPCOG00000014231	SNRPN	100	100.000	MGP_CAROLIEiJ_G0029815	Snrpn	100	100.000	Mus_caroli
ENSPCOG00000014231	SNRPN	100	100.000	ENSMUSG00000102252	Snrpn	100	100.000	Mus_musculus
ENSPCOG00000014231	SNRPN	100	100.000	MGP_PahariEiJ_G0013040	Snrpn	100	100.000	Mus_pahari
ENSPCOG00000014231	SNRPN	100	100.000	MGP_SPRETEiJ_G0030918	Snrpn	100	100.000	Mus_spretus
ENSPCOG00000014231	SNRPN	88	51.659	ENSMPUG00000007115	-	64	70.423	Mustela_putorius_furo
ENSPCOG00000014231	SNRPN	100	99.583	ENSMPUG00000014638	-	100	99.583	Mustela_putorius_furo
ENSPCOG00000014231	SNRPN	85	60.784	ENSMLUG00000025849	-	73	63.057	Myotis_lucifugus
ENSPCOG00000014231	SNRPN	95	62.281	ENSMLUG00000024428	-	62	71.111	Myotis_lucifugus
ENSPCOG00000014231	SNRPN	99	99.163	ENSMLUG00000023361	-	98	99.163	Myotis_lucifugus
ENSPCOG00000014231	SNRPN	100	100.000	ENSNGAG00000000181	Snrpn	100	100.000	Nannospalax_galili
ENSPCOG00000014231	SNRPN	100	83.750	ENSNLEG00000001376	SNRPN	99	83.750	Nomascus_leucogenys
ENSPCOG00000014231	SNRPN	100	95.833	ENSODEG00000019708	-	99	96.596	Octodon_degus
ENSPCOG00000014231	SNRPN	98	81.197	ENSODEG00000016065	-	87	86.473	Octodon_degus
ENSPCOG00000014231	SNRPN	100	99.583	ENSODEG00000013478	-	100	99.583	Octodon_degus
ENSPCOG00000014231	SNRPN	100	99.167	ENSODEG00000020110	-	100	99.167	Octodon_degus
ENSPCOG00000014231	SNRPN	100	99.585	ENSOCUG00000003532	-	100	99.585	Oryctolagus_cuniculus
ENSPCOG00000014231	SNRPN	74	92.090	ENSORLG00020007490	SNRPN	69	93.452	Oryzias_latipes_hni
ENSPCOG00000014231	SNRPN	74	92.090	ENSORLG00015003332	SNRPN	69	93.452	Oryzias_latipes_hsok
ENSPCOG00000014231	SNRPN	74	92.655	ENSOMEG00000002066	SNRPN	69	94.048	Oryzias_melastigma
ENSPCOG00000014231	SNRPN	100	100.000	ENSOGAG00000007392	SNRPN	100	100.000	Otolemur_garnettii
ENSPCOG00000014231	SNRPN	100	98.750	ENSOARG00000009080	SNRPN	100	98.750	Ovis_aries
ENSPCOG00000014231	SNRPN	100	100.000	ENSPPAG00000027650	SNRPN	100	100.000	Pan_paniscus
ENSPCOG00000014231	SNRPN	97	69.231	ENSPPAG00000034049	-	65	79.720	Pan_paniscus
ENSPCOG00000014231	SNRPN	100	99.583	ENSPPRG00000019878	-	100	99.583	Panthera_pardus
ENSPCOG00000014231	SNRPN	85	64.390	ENSPPRG00000006957	-	73	70.861	Panthera_pardus
ENSPCOG00000014231	SNRPN	100	99.167	ENSPTIG00000004537	SNRPN	100	99.167	Panthera_tigris_altaica
ENSPCOG00000014231	SNRPN	100	100.000	ENSPTRG00000006826	SNRPN	100	100.000	Pan_troglodytes
ENSPCOG00000014231	SNRPN	97	69.658	ENSPTRG00000052400	-	65	80.420	Pan_troglodytes
ENSPCOG00000014231	SNRPN	100	100.000	ENSPANG00000020142	SNRPN	100	100.000	Papio_anubis
ENSPCOG00000014231	SNRPN	89	95.794	ENSPEMG00000020979	-	89	95.775	Peromyscus_maniculatus_bairdii
ENSPCOG00000014231	SNRPN	100	89.583	ENSPEMG00000013920	-	100	89.583	Peromyscus_maniculatus_bairdii
ENSPCOG00000014231	SNRPN	100	100.000	ENSPEMG00000012911	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSPCOG00000014231	SNRPN	76	97.253	ENSPCIG00000004699	-	68	94.811	Phascolarctos_cinereus
ENSPCOG00000014231	SNRPN	72	93.642	ENSPMEG00000020674	SNRPN	69	93.452	Poecilia_mexicana
ENSPCOG00000014231	SNRPN	100	100.000	ENSPPYG00000006269	SNURF	100	100.000	Pongo_abelii
ENSPCOG00000014231	SNRPN	100	100.000	ENSRNOG00000059764	Snrpn	100	100.000	Rattus_norvegicus
ENSPCOG00000014231	SNRPN	100	100.000	ENSRBIG00000041765	SNRPN	100	100.000	Rhinopithecus_bieti
ENSPCOG00000014231	SNRPN	100	100.000	ENSRROG00000035157	SNRPN	100	100.000	Rhinopithecus_roxellana
ENSPCOG00000014231	SNRPN	100	98.750	ENSSBOG00000024929	-	100	98.750	Saimiri_boliviensis_boliviensis
ENSPCOG00000014231	SNRPN	100	100.000	ENSSBOG00000000110	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSPCOG00000014231	SNRPN	76	96.721	ENSSHAG00000010257	-	87	94.811	Sarcophilus_harrisii
ENSPCOG00000014231	SNRPN	99	77.824	ENSSARG00000000072	SNRPN	100	77.824	Sorex_araneus
ENSPCOG00000014231	SNRPN	100	99.167	ENSSSCG00000028124	SNRPN	100	99.167	Sus_scrofa
ENSPCOG00000014231	SNRPN	100	98.750	ENSTTRG00000010966	SNRPN	89	98.750	Tursiops_truncatus
ENSPCOG00000014231	SNRPN	93	99.552	ENSUAMG00000016284	SNRPN	85	93.033	Ursus_americanus
ENSPCOG00000014231	SNRPN	100	99.583	ENSUMAG00000025589	SNRPN	100	99.583	Ursus_maritimus
ENSPCOG00000014231	SNRPN	95	99.563	ENSVVUG00000017971	SNRPN	95	98.707	Vulpes_vulpes