EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000014364 (Gene tree)
Gene ID: 105808108
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Plus strand
Length: 65867 bases
Position: chrKQ020485.1:2153368-2219234
Accession: 105808108
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000006404	RRM_1	PF00076.22	2.7e-32	1	2
ENSPCOP00000006404	RRM_1	PF00076.22	2.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000016940	PSPC1-201	1512	XM_012641670	ENSPCOP00000006404	503 (aa)	XP_012497124	A0A2K6EXD8

Gene Model

Click here to download ENSPCOG00000014364's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000014364's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000014364	PSPC1	88	58.913	ENSPCOG00000027127	SFPQ	61	58.811
ENSPCOG00000014364	PSPC1	90	60.352	ENSPCOG00000008197	NONO	92	59.211

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000014364	PSPC1	100	94.455	ENSG00000121390	PSPC1	100	98.387	Homo_sapiens
ENSPCOG00000014364	PSPC1	88	67.171	ENSAPOG00000015946	pspc1	88	66.247	Acanthochromis_polyacanthus
ENSPCOG00000014364	PSPC1	100	93.881	ENSAMEG00000017420	PSPC1	100	93.881	Ailuropoda_melanoleuca
ENSPCOG00000014364	PSPC1	99	57.276	ENSACIG00000018695	pspc1	87	60.600	Amphilophus_citrinellus
ENSPCOG00000014364	PSPC1	88	66.667	ENSAOCG00000005279	pspc1	88	65.762	Amphiprion_ocellaris
ENSPCOG00000014364	PSPC1	88	67.763	ENSAPEG00000015927	pspc1	88	66.170	Amphiprion_percula
ENSPCOG00000014364	PSPC1	97	54.771	ENSATEG00000004878	pspc1	87	59.322	Anabas_testudineus
ENSPCOG00000014364	PSPC1	76	88.119	ENSAPLG00000006246	PSPC1	100	88.119	Anas_platyrhynchos
ENSPCOG00000014364	PSPC1	88	60.619	ENSAPLG00000003643	SFPQ	83	59.130	Anas_platyrhynchos
ENSPCOG00000014364	PSPC1	99	79.035	ENSACAG00000002093	PSPC1	91	85.155	Anolis_carolinensis
ENSPCOG00000014364	PSPC1	89	52.361	ENSACAG00000013307	-	69	55.983	Anolis_carolinensis
ENSPCOG00000014364	PSPC1	100	94.073	ENSANAG00000000059	PSPC1	98	96.124	Aotus_nancymaae
ENSPCOG00000014364	PSPC1	99	57.090	ENSACLG00000027220	pspc1	87	60.606	Astatotilapia_calliptera
ENSPCOG00000014364	PSPC1	99	60.806	ENSAMXG00000036881	pspc1	91	66.599	Astyanax_mexicanus
ENSPCOG00000014364	PSPC1	100	91.587	ENSBTAG00000003934	PSPC1	100	91.587	Bos_taurus
ENSPCOG00000014364	PSPC1	100	94.073	ENSCJAG00000004554	PSPC1	100	94.073	Callithrix_jacchus
ENSPCOG00000014364	PSPC1	100	94.073	ENSCAFG00020002009	PSPC1	98	98.446	Canis_lupus_dingo
ENSPCOG00000014364	PSPC1	100	91.587	ENSCHIG00000016708	PSPC1	100	91.587	Capra_hircus
ENSPCOG00000014364	PSPC1	79	82.938	ENSTSYG00000032882	PSPC1	93	80.285	Carlito_syrichta
ENSPCOG00000014364	PSPC1	100	92.543	ENSCPOG00000000395	PSPC1	98	97.409	Cavia_porcellus
ENSPCOG00000014364	PSPC1	100	94.073	ENSCCAG00000033498	PSPC1	100	94.073	Cebus_capucinus
ENSPCOG00000014364	PSPC1	100	94.073	ENSCATG00000036434	PSPC1	98	97.734	Cercocebus_atys
ENSPCOG00000014364	PSPC1	88	83.153	ENSCLAG00000005241	PSPC1	99	83.153	Chinchilla_lanigera
ENSPCOG00000014364	PSPC1	100	92.352	ENSCHOG00000008913	PSPC1	100	92.352	Choloepus_hoffmanni
ENSPCOG00000014364	PSPC1	99	82.420	ENSCPBG00000020859	PSPC1	89	89.293	Chrysemys_picta_bellii
ENSPCOG00000014364	PSPC1	61	58.766	ENSCSAVG00000003533	-	83	46.895	Ciona_savignyi
ENSPCOG00000014364	PSPC1	77	87.245	ENSCANG00000018948	PSPC1	87	99.620	Colobus_angolensis_palliatus
ENSPCOG00000014364	PSPC1	100	93.117	ENSCGRG00001018368	Pspc1	100	93.117	Cricetulus_griseus_chok1gshd
ENSPCOG00000014364	PSPC1	100	93.117	ENSCGRG00000011724	Pspc1	100	93.117	Cricetulus_griseus_crigri
ENSPCOG00000014364	PSPC1	86	66.377	ENSCVAG00000007679	-	92	64.682	Cyprinodon_variegatus
ENSPCOG00000014364	PSPC1	99	62.894	ENSDARG00000006621	pspc1	100	65.700	Danio_rerio
ENSPCOG00000014364	PSPC1	100	92.734	ENSDNOG00000011078	PSPC1	100	92.734	Dasypus_novemcinctus
ENSPCOG00000014364	PSPC1	100	90.057	ENSDORG00000016050	Pspc1	100	90.057	Dipodomys_ordii
ENSPCOG00000014364	PSPC1	53	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSPCOG00000014364	PSPC1	60	46.341	ENSEBUG00000010133	pspc1	78	48.822	Eptatretus_burgeri
ENSPCOG00000014364	PSPC1	87	58.017	ENSEBUG00000003964	-	62	70.725	Eptatretus_burgeri
ENSPCOG00000014364	PSPC1	100	93.308	ENSEASG00005000119	PSPC1	98	97.150	Equus_asinus_asinus
ENSPCOG00000014364	PSPC1	100	93.308	ENSECAG00000017286	PSPC1	98	97.150	Equus_caballus
ENSPCOG00000014364	PSPC1	76	91.803	ENSEEUG00000011288	-	73	91.803	Erinaceus_europaeus
ENSPCOG00000014364	PSPC1	99	62.709	ENSELUG00000003746	pspc1	80	80.723	Esox_lucius
ENSPCOG00000014364	PSPC1	100	94.073	ENSFCAG00000027841	PSPC1	98	98.187	Felis_catus
ENSPCOG00000014364	PSPC1	89	89.722	ENSFALG00000008750	PSPC1	99	83.206	Ficedula_albicollis
ENSPCOG00000014364	PSPC1	100	90.440	ENSFDAG00000002617	PSPC1	100	90.440	Fukomys_damarensis
ENSPCOG00000014364	PSPC1	88	64.668	ENSGMOG00000015074	pspc1	86	64.009	Gadus_morhua
ENSPCOG00000014364	PSPC1	99	82.955	ENSGALG00000017142	PSPC1	99	81.869	Gallus_gallus
ENSPCOG00000014364	PSPC1	70	74.148	ENSGAFG00000006327	pspc1	72	74.286	Gambusia_affinis
ENSPCOG00000014364	PSPC1	87	62.500	ENSGACG00000014901	pspc1	91	74.085	Gasterosteus_aculeatus
ENSPCOG00000014364	PSPC1	99	82.231	ENSGAGG00000019164	PSPC1	99	83.462	Gopherus_agassizii
ENSPCOG00000014364	PSPC1	91	58.947	ENSGAGG00000017325	-	70	57.839	Gopherus_agassizii
ENSPCOG00000014364	PSPC1	100	94.264	ENSGGOG00000003414	PSPC1	98	98.964	Gorilla_gorilla
ENSPCOG00000014364	PSPC1	99	60.589	ENSHBUG00000001139	pspc1	87	67.024	Haplochromis_burtoni
ENSPCOG00000014364	PSPC1	100	92.543	ENSHGLG00000018811	PSPC1	100	91.396	Heterocephalus_glaber_female
ENSPCOG00000014364	PSPC1	70	92.571	ENSHGLG00100007962	PSPC1	100	92.571	Heterocephalus_glaber_male
ENSPCOG00000014364	PSPC1	81	63.484	ENSHCOG00000013251	pspc1	77	69.679	Hippocampus_comes
ENSPCOG00000014364	PSPC1	90	69.278	ENSIPUG00000013192	pspc1	91	70.928	Ictalurus_punctatus
ENSPCOG00000014364	PSPC1	100	94.264	ENSSTOG00000026833	PSPC1	98	98.446	Ictidomys_tridecemlineatus
ENSPCOG00000014364	PSPC1	100	93.499	ENSJJAG00000018334	Pspc1	100	93.499	Jaculus_jaculus
ENSPCOG00000014364	PSPC1	88	57.788	ENSKMAG00000013525	-	92	54.947	Kryptolebias_marmoratus
ENSPCOG00000014364	PSPC1	95	62.008	ENSLBEG00000004474	pspc1	89	62.834	Labrus_bergylta
ENSPCOG00000014364	PSPC1	99	72.222	ENSLACG00000010762	PSPC1	88	80.603	Latimeria_chalumnae
ENSPCOG00000014364	PSPC1	88	79.393	ENSLOCG00000010832	pspc1	91	79.393	Lepisosteus_oculatus
ENSPCOG00000014364	PSPC1	100	92.925	ENSLAFG00000010968	PSPC1	100	92.925	Loxodonta_africana
ENSPCOG00000014364	PSPC1	100	94.073	ENSMFAG00000032728	PSPC1	98	98.571	Macaca_fascicularis
ENSPCOG00000014364	PSPC1	100	94.073	ENSMMUG00000020262	PSPC1	100	94.073	Macaca_mulatta
ENSPCOG00000014364	PSPC1	100	94.073	ENSMNEG00000027401	PSPC1	100	94.073	Macaca_nemestrina
ENSPCOG00000014364	PSPC1	100	93.484	ENSMLEG00000039043	PSPC1	99	100.000	Mandrillus_leucophaeus
ENSPCOG00000014364	PSPC1	88	63.711	ENSMAMG00000004333	pspc1	88	64.330	Mastacembelus_armatus
ENSPCOG00000014364	PSPC1	99	57.090	ENSMZEG00005005726	pspc1	87	60.606	Maylandia_zebra
ENSPCOG00000014364	PSPC1	77	87.931	ENSMGAG00000015134	PSPC1	100	87.931	Meleagris_gallopavo
ENSPCOG00000014364	PSPC1	88	87.446	ENSMAUG00000021067	Pspc1	99	87.446	Mesocricetus_auratus
ENSPCOG00000014364	PSPC1	100	95.220	ENSMICG00000013970	PSPC1	98	99.223	Microcebus_murinus
ENSPCOG00000014364	PSPC1	100	93.499	ENSMOCG00000006060	Pspc1	100	93.499	Microtus_ochrogaster
ENSPCOG00000014364	PSPC1	70	53.631	ENSMMOG00000004352	pspc1	62	51.724	Mola_mola
ENSPCOG00000014364	PSPC1	92	92.577	ENSMODG00000008029	PSPC1	78	92.577	Monodelphis_domestica
ENSPCOG00000014364	PSPC1	88	66.309	ENSMALG00000008914	pspc1	88	66.167	Monopterus_albus
ENSPCOG00000014364	PSPC1	100	93.321	MGP_CAROLIEiJ_G0019341	Pspc1	100	93.321	Mus_caroli
ENSPCOG00000014364	PSPC1	100	93.511	ENSMUSG00000021938	Pspc1	100	93.511	Mus_musculus
ENSPCOG00000014364	PSPC1	100	93.511	MGP_PahariEiJ_G0030359	Pspc1	100	93.511	Mus_pahari
ENSPCOG00000014364	PSPC1	100	93.321	MGP_SPRETEiJ_G0020232	Pspc1	100	93.321	Mus_spretus
ENSPCOG00000014364	PSPC1	100	93.690	ENSMPUG00000013347	PSPC1	100	93.690	Mustela_putorius_furo
ENSPCOG00000014364	PSPC1	100	91.635	ENSMLUG00000017663	PSPC1	100	91.635	Myotis_lucifugus
ENSPCOG00000014364	PSPC1	100	92.925	ENSNGAG00000011271	Pspc1	100	92.925	Nannospalax_galili
ENSPCOG00000014364	PSPC1	77	63.366	ENSNBRG00000014059	pspc1	83	65.266	Neolamprologus_brichardi
ENSPCOG00000014364	PSPC1	100	94.264	ENSNLEG00000001294	PSPC1	100	94.264	Nomascus_leucogenys
ENSPCOG00000014364	PSPC1	84	95.703	ENSMEUG00000000476	PSPC1	84	95.703	Notamacropus_eugenii
ENSPCOG00000014364	PSPC1	100	81.298	ENSODEG00000019012	-	100	81.853	Octodon_degus
ENSPCOG00000014364	PSPC1	100	81.644	ENSODEG00000007817	-	100	76.749	Octodon_degus
ENSPCOG00000014364	PSPC1	99	60.846	ENSONIG00000012010	pspc1	87	66.525	Oreochromis_niloticus
ENSPCOG00000014364	PSPC1	75	91.980	ENSOANG00000009017	-	100	91.980	Ornithorhynchus_anatinus
ENSPCOG00000014364	PSPC1	99	64.122	ENSOANG00000011381	-	99	62.857	Ornithorhynchus_anatinus
ENSPCOG00000014364	PSPC1	100	93.881	ENSOCUG00000006153	PSPC1	100	93.881	Oryctolagus_cuniculus
ENSPCOG00000014364	PSPC1	88	67.021	ENSORLG00000004232	-	91	63.232	Oryzias_latipes
ENSPCOG00000014364	PSPC1	88	66.596	ENSORLG00020000578	PSPC1	91	63.636	Oryzias_latipes_hni
ENSPCOG00000014364	PSPC1	88	67.447	ENSORLG00015017480	pspc1	91	63.636	Oryzias_latipes_hsok
ENSPCOG00000014364	PSPC1	100	95.029	ENSOGAG00000012643	PSPC1	100	95.029	Otolemur_garnettii
ENSPCOG00000014364	PSPC1	100	87.238	ENSOARG00000014163	PSPC1	100	87.238	Ovis_aries
ENSPCOG00000014364	PSPC1	88	87.527	ENSPPAG00000009836	PSPC1	97	96.491	Pan_paniscus
ENSPCOG00000014364	PSPC1	100	94.073	ENSPPRG00000008833	PSPC1	100	94.073	Panthera_pardus
ENSPCOG00000014364	PSPC1	100	78.394	ENSPTIG00000016917	PSPC1	100	78.394	Panthera_tigris_altaica
ENSPCOG00000014364	PSPC1	98	92.802	ENSPTRG00000005677	PSPC1	98	98.964	Pan_troglodytes
ENSPCOG00000014364	PSPC1	100	94.264	ENSPANG00000001992	PSPC1	96	98.857	Papio_anubis
ENSPCOG00000014364	PSPC1	81	75.534	ENSPKIG00000003578	pspc1	89	73.191	Paramormyrops_kingsleyae
ENSPCOG00000014364	PSPC1	99	82.519	ENSPSIG00000005168	PSPC1	89	89.079	Pelodiscus_sinensis
ENSPCOG00000014364	PSPC1	57	73.702	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSPCOG00000014364	PSPC1	100	93.690	ENSPEMG00000015214	Pspc1	100	93.690	Peromyscus_maniculatus_bairdii
ENSPCOG00000014364	PSPC1	50	47.692	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSPCOG00000014364	PSPC1	99	92.720	ENSPCIG00000017680	PSPC1	100	92.720	Phascolarctos_cinereus
ENSPCOG00000014364	PSPC1	88	67.031	ENSPFOG00000003362	pspc1	88	65.466	Poecilia_formosa
ENSPCOG00000014364	PSPC1	88	67.031	ENSPLAG00000011540	pspc1	93	63.600	Poecilia_latipinna
ENSPCOG00000014364	PSPC1	88	66.594	ENSPMEG00000008322	pspc1	93	62.800	Poecilia_mexicana
ENSPCOG00000014364	PSPC1	88	66.594	ENSPREG00000007786	pspc1	87	65.466	Poecilia_reticulata
ENSPCOG00000014364	PSPC1	100	93.690	ENSPPYG00000005186	PSPC1	100	93.690	Pongo_abelii
ENSPCOG00000014364	PSPC1	69	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSPCOG00000014364	PSPC1	100	89.293	ENSPVAG00000005036	PSPC1	100	89.695	Pteropus_vampyrus
ENSPCOG00000014364	PSPC1	99	57.276	ENSPNYG00000008893	pspc1	87	60.606	Pundamilia_nyererei
ENSPCOG00000014364	PSPC1	99	64.060	ENSPNAG00000016511	pspc1	92	69.959	Pygocentrus_nattereri
ENSPCOG00000014364	PSPC1	100	93.499	ENSRNOG00000020782	Pspc1	100	93.499	Rattus_norvegicus
ENSPCOG00000014364	PSPC1	93	93.840	ENSRBIG00000036057	PSPC1	98	98.571	Rhinopithecus_bieti
ENSPCOG00000014364	PSPC1	100	94.264	ENSRROG00000036334	PSPC1	98	98.705	Rhinopithecus_roxellana
ENSPCOG00000014364	PSPC1	78	82.567	ENSSBOG00000028172	PSPC1	91	94.946	Saimiri_boliviensis_boliviensis
ENSPCOG00000014364	PSPC1	100	87.429	ENSSHAG00000004696	PSPC1	100	87.429	Sarcophilus_harrisii
ENSPCOG00000014364	PSPC1	81	74.941	ENSSFOG00015001395	pspc1	100	72.176	Scleropages_formosus
ENSPCOG00000014364	PSPC1	95	60.811	ENSSMAG00000001761	pspc1	87	74.359	Scophthalmus_maximus
ENSPCOG00000014364	PSPC1	88	66.388	ENSSDUG00000010651	pspc1	88	65.971	Seriola_dumerili
ENSPCOG00000014364	PSPC1	87	66.443	ENSSLDG00000004284	pspc1	86	63.355	Seriola_lalandi_dorsalis
ENSPCOG00000014364	PSPC1	100	84.895	ENSSARG00000000888	PSPC1	100	85.468	Sorex_araneus
ENSPCOG00000014364	PSPC1	99	76.402	ENSSPUG00000008550	PSPC1	89	82.495	Sphenodon_punctatus
ENSPCOG00000014364	PSPC1	88	66.242	ENSSPAG00000001921	pspc1	91	63.546	Stegastes_partitus
ENSPCOG00000014364	PSPC1	100	92.366	ENSSSCG00000009569	PSPC1	99	96.124	Sus_scrofa
ENSPCOG00000014364	PSPC1	89	89.722	ENSTGUG00000011295	PSPC1	100	89.722	Taeniopygia_guttata
ENSPCOG00000014364	PSPC1	88	60.394	ENSTRUG00000011335	pspc1	87	59.873	Takifugu_rubripes
ENSPCOG00000014364	PSPC1	88	63.274	ENSTNIG00000010358	pspc1	91	60.537	Tetraodon_nigroviridis
ENSPCOG00000014364	PSPC1	100	74.761	ENSTBEG00000002361	PSPC1	100	73.855	Tupaia_belangeri
ENSPCOG00000014364	PSPC1	100	92.161	ENSTTRG00000003343	PSPC1	100	91.412	Tursiops_truncatus
ENSPCOG00000014364	PSPC1	70	98.006	ENSUAMG00000012309	PSPC1	100	98.006	Ursus_americanus
ENSPCOG00000014364	PSPC1	93	93.634	ENSUMAG00000013993	PSPC1	98	98.286	Ursus_maritimus
ENSPCOG00000014364	PSPC1	75	93.484	ENSVPAG00000010029	PSPC1	100	93.484	Vicugna_pacos
ENSPCOG00000014364	PSPC1	100	94.073	ENSVVUG00000006414	PSPC1	100	98.446	Vulpes_vulpes
ENSPCOG00000014364	PSPC1	68	72.145	ENSXCOG00000017438	pspc1	85	72.145	Xiphophorus_couchianus
ENSPCOG00000014364	PSPC1	70	73.295	ENSXMAG00000007929	pspc1	85	72.423	Xiphophorus_maculatus