EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000019837 (Gene tree)
Gene ID: 105818161
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Plus strand
Length: 11393 bases
Position: chrKQ024158.1:1134124-1145516
Accession: 105818161
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000016162	LSM	PF01423.22	9.6e-17	1	1
ENSPCOP00000016163	LSM	PF01423.22	9.8e-14	1	1
ENSPCOP00000016164	LSM	PF01423.22	9.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000026786	LSM4-203	378	-	ENSPCOP00000016164	125 (aa)	-	A0A2K6FQB6
ENSPCOT00000026785	LSM4-202	378	-	ENSPCOP00000016163	125 (aa)	-	A0A2K6FQB6
ENSPCOT00000026784	LSM4-201	1046	XM_012654081	ENSPCOP00000016162	139 (aa)	XP_012509535	A0A2K6FQA5

Gene Model

Click here to download ENSPCOG00000019837's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000019837's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000019837	LSM4	52	34.722	ENSPCOG00000011842	SNRPD3	75	30.208
ENSPCOG00000019837	LSM4	71	33.663	ENSPCOG00000020134	LSM2	82	35.000
ENSPCOG00000019837	LSM4	100	74.400	ENSPCOG00000014154	-	100	72.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000019837	LSM4	100	99.281	ENSG00000130520	LSM4	100	99.281	Homo_sapiens
ENSPCOG00000019837	LSM4	99	72.848	ENSAPOG00000005643	lsm4	66	95.960	Acanthochromis_polyacanthus
ENSPCOG00000019837	LSM4	100	99.200	ENSAMEG00000011162	LSM4	95	99.275	Ailuropoda_melanoleuca
ENSPCOG00000019837	LSM4	99	76.923	ENSAOCG00000006414	lsm4	67	95.960	Amphiprion_ocellaris
ENSPCOG00000019837	LSM4	99	74.306	ENSAPEG00000006238	lsm4	66	95.960	Amphiprion_percula
ENSPCOG00000019837	LSM4	71	95.960	ENSATEG00000016559	lsm4	65	95.960	Anabas_testudineus
ENSPCOG00000019837	LSM4	100	99.281	ENSANAG00000034659	LSM4	100	99.281	Aotus_nancymaae
ENSPCOG00000019837	LSM4	79	83.065	ENSACLG00000022738	lsm4	67	95.960	Astatotilapia_calliptera
ENSPCOG00000019837	LSM4	99	83.333	ENSAMXG00000016932	lsm4	96	83.212	Astyanax_mexicanus
ENSPCOG00000019837	LSM4	100	99.281	ENSBTAG00000008578	LSM4	100	99.281	Bos_taurus
ENSPCOG00000019837	LSM4	60	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSPCOG00000019837	LSM4	100	99.281	ENSCJAG00000014171	LSM4	100	99.281	Callithrix_jacchus
ENSPCOG00000019837	LSM4	99	99.275	ENSCAFG00000014900	LSM4	90	99.275	Canis_familiaris
ENSPCOG00000019837	LSM4	100	99.281	ENSCAFG00020012137	LSM4	100	99.281	Canis_lupus_dingo
ENSPCOG00000019837	LSM4	100	99.200	ENSCHIG00000010928	LSM4	91	99.275	Capra_hircus
ENSPCOG00000019837	LSM4	100	98.561	ENSTSYG00000030906	LSM4	100	98.561	Carlito_syrichta
ENSPCOG00000019837	LSM4	100	97.122	ENSCAPG00000014140	LSM4	100	97.122	Cavia_aperea
ENSPCOG00000019837	LSM4	100	97.122	ENSCPOG00000024117	LSM4	100	97.122	Cavia_porcellus
ENSPCOG00000019837	LSM4	100	99.281	ENSCCAG00000036308	LSM4	100	99.281	Cebus_capucinus
ENSPCOG00000019837	LSM4	100	99.281	ENSCATG00000029311	LSM4	100	99.281	Cercocebus_atys
ENSPCOG00000019837	LSM4	100	95.683	ENSCLAG00000010828	LSM4	100	95.683	Chinchilla_lanigera
ENSPCOG00000019837	LSM4	100	99.281	ENSCSAG00000005370	LSM4	100	99.281	Chlorocebus_sabaeus
ENSPCOG00000019837	LSM4	100	81.295	ENSCPBG00000012925	LSM4	100	89.209	Chrysemys_picta_bellii
ENSPCOG00000019837	LSM4	62	91.860	ENSCING00000007519	-	72	91.304	Ciona_intestinalis
ENSPCOG00000019837	LSM4	62	93.023	ENSCSAVG00000008596	-	74	92.391	Ciona_savignyi
ENSPCOG00000019837	LSM4	100	99.281	ENSCANG00000043686	LSM4	100	99.281	Colobus_angolensis_palliatus
ENSPCOG00000019837	LSM4	100	94.964	ENSCGRG00001014436	Lsm4	100	94.964	Cricetulus_griseus_chok1gshd
ENSPCOG00000019837	LSM4	100	94.400	ENSCGRG00000009398	Lsm4	100	94.928	Cricetulus_griseus_crigri
ENSPCOG00000019837	LSM4	70	94.845	ENSCSEG00000016127	lsm4	96	76.642	Cynoglossus_semilaevis
ENSPCOG00000019837	LSM4	99	76.812	ENSCVAG00000010601	lsm4	69	94.949	Cyprinodon_variegatus
ENSPCOG00000019837	LSM4	98	73.984	ENSCVAG00000021828	lsm4	64	94.048	Cyprinodon_variegatus
ENSPCOG00000019837	LSM4	97	78.014	ENSDARG00000023852	lsm4	69	94.949	Danio_rerio
ENSPCOG00000019837	LSM4	100	97.122	ENSDORG00000024225	Lsm4	100	97.122	Dipodomys_ordii
ENSPCOG00000019837	LSM4	65	87.778	FBgn0032240	CG17768	58	87.778	Drosophila_melanogaster
ENSPCOG00000019837	LSM4	99	97.581	ENSETEG00000007762	-	100	97.581	Echinops_telfairi
ENSPCOG00000019837	LSM4	54	93.333	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSPCOG00000019837	LSM4	100	99.281	ENSECAG00000010141	LSM4	57	99.281	Equus_caballus
ENSPCOG00000019837	LSM4	95	83.582	ENSELUG00000012821	lsm4	100	81.818	Esox_lucius
ENSPCOG00000019837	LSM4	100	99.281	ENSFCAG00000040580	LSM4	100	99.281	Felis_catus
ENSPCOG00000019837	LSM4	99	80.435	ENSFALG00000009478	LSM4	99	89.130	Ficedula_albicollis
ENSPCOG00000019837	LSM4	100	96.000	ENSFDAG00000010124	LSM4	100	96.377	Fukomys_damarensis
ENSPCOG00000019837	LSM4	69	95.833	ENSGMOG00000007729	lsm4	95	78.723	Gadus_morhua
ENSPCOG00000019837	LSM4	100	80.576	ENSGALG00000003385	LSM4	100	89.209	Gallus_gallus
ENSPCOG00000019837	LSM4	79	82.258	ENSGAFG00000004903	lsm4	64	91.667	Gambusia_affinis
ENSPCOG00000019837	LSM4	68	96.842	ENSGACG00000008140	lsm4	66	95.960	Gasterosteus_aculeatus
ENSPCOG00000019837	LSM4	100	81.295	ENSGAGG00000017812	LSM4	100	89.209	Gopherus_agassizii
ENSPCOG00000019837	LSM4	100	99.281	ENSGGOG00000012914	-	100	99.281	Gorilla_gorilla
ENSPCOG00000019837	LSM4	71	95.960	ENSHBUG00000008858	lsm4	56	95.960	Haplochromis_burtoni
ENSPCOG00000019837	LSM4	100	96.403	ENSHGLG00000006568	LSM4	100	96.403	Heterocephalus_glaber_female
ENSPCOG00000019837	LSM4	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSPCOG00000019837	LSM4	99	76.642	ENSHCOG00000008819	lsm4	70	95.960	Hippocampus_comes
ENSPCOG00000019837	LSM4	99	83.333	ENSIPUG00000005368	Lsm4	70	95.960	Ictalurus_punctatus
ENSPCOG00000019837	LSM4	100	99.281	ENSSTOG00000016494	LSM4	100	99.281	Ictidomys_tridecemlineatus
ENSPCOG00000019837	LSM4	100	96.403	ENSJJAG00000017420	Lsm4	100	96.403	Jaculus_jaculus
ENSPCOG00000019837	LSM4	62	97.674	ENSKMAG00000005073	lsm4	69	94.949	Kryptolebias_marmoratus
ENSPCOG00000019837	LSM4	71	95.960	ENSLBEG00000027930	lsm4	66	95.960	Labrus_bergylta
ENSPCOG00000019837	LSM4	99	82.482	ENSLACG00000015861	LSM4	98	82.482	Latimeria_chalumnae
ENSPCOG00000019837	LSM4	93	82.946	ENSLOCG00000002025	lsm4	71	94.000	Lepisosteus_oculatus
ENSPCOG00000019837	LSM4	100	97.600	ENSLAFG00000017459	LSM4	99	97.826	Loxodonta_africana
ENSPCOG00000019837	LSM4	100	99.281	ENSMFAG00000031194	LSM4	100	99.281	Macaca_fascicularis
ENSPCOG00000019837	LSM4	100	99.281	ENSMMUG00000004405	LSM4	100	99.281	Macaca_mulatta
ENSPCOG00000019837	LSM4	100	99.281	ENSMNEG00000042899	LSM4	100	99.281	Macaca_nemestrina
ENSPCOG00000019837	LSM4	100	99.281	ENSMLEG00000027948	LSM4	100	99.281	Mandrillus_leucophaeus
ENSPCOG00000019837	LSM4	99	78.986	ENSMAMG00000006190	lsm4	96	76.642	Mastacembelus_armatus
ENSPCOG00000019837	LSM4	79	83.065	ENSMZEG00005016420	lsm4	68	95.960	Maylandia_zebra
ENSPCOG00000019837	LSM4	99	82.014	ENSMGAG00000004976	LSM4	99	89.130	Meleagris_gallopavo
ENSPCOG00000019837	LSM4	100	100.000	ENSMICG00000000222	LSM4	100	100.000	Microcebus_murinus
ENSPCOG00000019837	LSM4	100	95.683	ENSMOCG00000020861	Lsm4	100	95.683	Microtus_ochrogaster
ENSPCOG00000019837	LSM4	99	95.161	ENSMODG00000015044	-	100	95.161	Monodelphis_domestica
ENSPCOG00000019837	LSM4	99	76.429	ENSMALG00000018159	lsm4	69	94.949	Monopterus_albus
ENSPCOG00000019837	LSM4	100	95.683	MGP_CAROLIEiJ_G0031158	Lsm4	100	95.683	Mus_caroli
ENSPCOG00000019837	LSM4	100	95.683	ENSMUSG00000031848	Lsm4	100	95.683	Mus_musculus
ENSPCOG00000019837	LSM4	100	95.683	MGP_PahariEiJ_G0021623	Lsm4	100	95.683	Mus_pahari
ENSPCOG00000019837	LSM4	100	95.683	MGP_SPRETEiJ_G0032276	Lsm4	100	95.683	Mus_spretus
ENSPCOG00000019837	LSM4	100	99.281	ENSMPUG00000015589	LSM4	100	99.281	Mustela_putorius_furo
ENSPCOG00000019837	LSM4	100	99.200	ENSMLUG00000004010	LSM4	99	99.275	Myotis_lucifugus
ENSPCOG00000019837	LSM4	100	95.683	ENSNGAG00000008644	Lsm4	100	95.683	Nannospalax_galili
ENSPCOG00000019837	LSM4	71	95.918	ENSNBRG00000022150	lsm4	60	95.918	Neolamprologus_brichardi
ENSPCOG00000019837	LSM4	99	91.935	ENSMEUG00000013229	LSM4	100	91.935	Notamacropus_eugenii
ENSPCOG00000019837	LSM4	99	92.742	ENSOPRG00000005575	LSM4	100	91.129	Ochotona_princeps
ENSPCOG00000019837	LSM4	100	86.331	ENSODEG00000004519	-	100	78.417	Octodon_degus
ENSPCOG00000019837	LSM4	100	96.403	ENSODEG00000020549	-	100	96.403	Octodon_degus
ENSPCOG00000019837	LSM4	100	72.662	ENSODEG00000011712	-	100	72.662	Octodon_degus
ENSPCOG00000019837	LSM4	79	83.065	ENSONIG00000012724	lsm4	67	95.960	Oreochromis_niloticus
ENSPCOG00000019837	LSM4	58	98.630	ENSOANG00000007434	LSM4	89	92.233	Ornithorhynchus_anatinus
ENSPCOG00000019837	LSM4	99	84.397	ENSORLG00000008391	lsm4	69	94.949	Oryzias_latipes
ENSPCOG00000019837	LSM4	99	72.185	ENSORLG00020014829	lsm4	69	94.949	Oryzias_latipes_hni
ENSPCOG00000019837	LSM4	99	84.397	ENSORLG00015010205	lsm4	69	94.949	Oryzias_latipes_hsok
ENSPCOG00000019837	LSM4	100	82.734	ENSOMEG00000003606	lsm4	69	94.949	Oryzias_melastigma
ENSPCOG00000019837	LSM4	71	100.000	ENSOGAG00000027992	LSM4	68	100.000	Otolemur_garnettii
ENSPCOG00000019837	LSM4	95	99.160	ENSOARG00000012553	LSM4	94	99.160	Ovis_aries
ENSPCOG00000019837	LSM4	100	99.281	ENSPPAG00000044045	-	100	99.281	Pan_paniscus
ENSPCOG00000019837	LSM4	100	99.281	ENSPPRG00000018264	LSM4	100	99.281	Panthera_pardus
ENSPCOG00000019837	LSM4	100	99.200	ENSPTIG00000006306	LSM4	100	99.275	Panthera_tigris_altaica
ENSPCOG00000019837	LSM4	100	99.281	ENSPTRG00000031470	LSM4	100	99.281	Pan_troglodytes
ENSPCOG00000019837	LSM4	100	99.281	ENSPANG00000014399	LSM4	100	99.281	Papio_anubis
ENSPCOG00000019837	LSM4	99	81.022	ENSPKIG00000006154	lsm4	71	94.000	Paramormyrops_kingsleyae
ENSPCOG00000019837	LSM4	99	80.435	ENSPSIG00000012358	LSM4	100	89.130	Pelodiscus_sinensis
ENSPCOG00000019837	LSM4	100	95.683	ENSPEMG00000001358	Lsm4	100	95.683	Peromyscus_maniculatus_bairdii
ENSPCOG00000019837	LSM4	79	83.065	ENSPFOG00000000570	lsm4	53	95.960	Poecilia_formosa
ENSPCOG00000019837	LSM4	99	75.694	ENSPLAG00000016267	lsm4	69	95.960	Poecilia_latipinna
ENSPCOG00000019837	LSM4	98	77.698	ENSPMEG00000016378	lsm4	69	95.960	Poecilia_mexicana
ENSPCOG00000019837	LSM4	99	76.087	ENSPREG00000011290	lsm4	53	95.960	Poecilia_reticulata
ENSPCOG00000019837	LSM4	100	99.281	ENSPPYG00000009736	LSM4	100	99.281	Pongo_abelii
ENSPCOG00000019837	LSM4	99	97.581	ENSPCAG00000008513	LSM4	100	97.581	Procavia_capensis
ENSPCOG00000019837	LSM4	100	99.281	ENSPVAG00000015383	LSM4	100	99.281	Pteropus_vampyrus
ENSPCOG00000019837	LSM4	79	83.065	ENSPNYG00000016794	lsm4	68	95.960	Pundamilia_nyererei
ENSPCOG00000019837	LSM4	96	82.836	ENSPNAG00000016598	lsm4	73	95.918	Pygocentrus_nattereri
ENSPCOG00000019837	LSM4	100	95.683	ENSRNOG00000019572	Lsm4	100	95.683	Rattus_norvegicus
ENSPCOG00000019837	LSM4	100	99.281	ENSRBIG00000024717	LSM4	100	99.281	Rhinopithecus_bieti
ENSPCOG00000019837	LSM4	100	99.281	ENSRROG00000045706	LSM4	100	99.281	Rhinopithecus_roxellana
ENSPCOG00000019837	LSM4	60	40.860	YER112W	LSM4	52	39.175	Saccharomyces_cerevisiae
ENSPCOG00000019837	LSM4	100	99.200	ENSSBOG00000022455	LSM4	100	99.200	Saimiri_boliviensis_boliviensis
ENSPCOG00000019837	LSM4	100	95.683	ENSSHAG00000011559	LSM4	100	95.683	Sarcophilus_harrisii
ENSPCOG00000019837	LSM4	99	79.562	ENSSFOG00015021067	lsm4	71	94.000	Scleropages_formosus
ENSPCOG00000019837	LSM4	99	71.127	ENSSMAG00000021020	lsm4	95	71.127	Scophthalmus_maximus
ENSPCOG00000019837	LSM4	71	95.960	ENSSDUG00000009588	lsm4	59	95.960	Seriola_dumerili
ENSPCOG00000019837	LSM4	71	95.960	ENSSLDG00000006827	lsm4	59	95.960	Seriola_lalandi_dorsalis
ENSPCOG00000019837	LSM4	63	98.851	ENSSPUG00000010166	LSM4	64	96.970	Sphenodon_punctatus
ENSPCOG00000019837	LSM4	99	72.848	ENSSPAG00000011615	lsm4	66	95.960	Stegastes_partitus
ENSPCOG00000019837	LSM4	100	99.281	ENSSSCG00000034314	LSM4	100	99.281	Sus_scrofa
ENSPCOG00000019837	LSM4	79	80.645	ENSTRUG00000021737	lsm4	69	93.939	Takifugu_rubripes
ENSPCOG00000019837	LSM4	99	80.000	ENSTNIG00000010191	lsm4	69	94.949	Tetraodon_nigroviridis
ENSPCOG00000019837	LSM4	100	99.200	ENSUAMG00000000665	LSM4	99	99.275	Ursus_americanus
ENSPCOG00000019837	LSM4	100	99.281	ENSUMAG00000009013	LSM4	100	99.281	Ursus_maritimus
ENSPCOG00000019837	LSM4	100	99.200	ENSVVUG00000008136	LSM4	71	99.275	Vulpes_vulpes
ENSPCOG00000019837	LSM4	100	90.647	ENSXETG00000024933	lsm4	100	88.489	Xenopus_tropicalis
ENSPCOG00000019837	LSM4	79	82.258	ENSXMAG00000026672	lsm4	53	94.949	Xiphophorus_maculatus