EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCOG00000020001 (Gene tree)
Gene ID: 105813409
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 10175 bases
Position: chrKQ022402.1:12623059-12633233
Accession: 105813409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000016489	CPSF_A	PF03178.15	3.1e-60	1	1
ENSPCOP00000016490	CPSF_A	PF03178.15	1.2e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000027117	CPSF1-202	612	-	ENSPCOP00000016490	203 (aa)	-	A0A2K6FR88
ENSPCOT00000027116	CPSF1-201	4260	XM_012648092	ENSPCOP00000016489	1419 (aa)	XP_012503546	A0A2K6FR77

Gene Model

Click here to download ENSPCOG00000020001's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000020001's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000020001	CPSF1	100	94.608	ENSG00000071894	CPSF1	100	94.608	Homo_sapiens
ENSPCOG00000020001	CPSF1	100	80.556	ENSAPOG00000019621	cpsf1	100	74.865	Acanthochromis_polyacanthus
ENSPCOG00000020001	CPSF1	97	93.863	ENSAMEG00000005557	CPSF1	100	93.863	Ailuropoda_melanoleuca
ENSPCOG00000020001	CPSF1	100	79.167	ENSACIG00000006112	cpsf1	100	74.775	Amphilophus_citrinellus
ENSPCOG00000020001	CPSF1	100	80.556	ENSAOCG00000007120	cpsf1	100	76.187	Amphiprion_ocellaris
ENSPCOG00000020001	CPSF1	100	80.556	ENSAPEG00000005755	cpsf1	100	76.568	Amphiprion_percula
ENSPCOG00000020001	CPSF1	100	80.093	ENSATEG00000011097	cpsf1	100	74.848	Anabas_testudineus
ENSPCOG00000020001	CPSF1	94	80.417	ENSACAG00000009655	CPSF1	100	80.491	Anolis_carolinensis
ENSPCOG00000020001	CPSF1	100	93.832	ENSANAG00000036514	CPSF1	100	93.832	Aotus_nancymaae
ENSPCOG00000020001	CPSF1	100	79.167	ENSACLG00000012231	cpsf1	99	75.581	Astatotilapia_calliptera
ENSPCOG00000020001	CPSF1	100	79.167	ENSAMXG00000008485	cpsf1	100	70.727	Astyanax_mexicanus
ENSPCOG00000020001	CPSF1	100	91.224	ENSBTAG00000008355	CPSF1	100	91.289	Bos_taurus
ENSPCOG00000020001	CPSF1	99	33.482	WBGene00022301	cpsf-1	100	35.393	Caenorhabditis_elegans
ENSPCOG00000020001	CPSF1	100	93.694	ENSCJAG00000021421	CPSF1	100	93.694	Callithrix_jacchus
ENSPCOG00000020001	CPSF1	97	92.852	ENSCAFG00000001600	CPSF1	100	92.852	Canis_familiaris
ENSPCOG00000020001	CPSF1	100	93.149	ENSCAFG00020020821	CPSF1	100	93.149	Canis_lupus_dingo
ENSPCOG00000020001	CPSF1	94	100.000	ENSCHIG00000015833	CPSF1	95	100.000	Capra_hircus
ENSPCOG00000020001	CPSF1	100	95.588	ENSTSYG00000028560	CPSF1	99	98.830	Carlito_syrichta
ENSPCOG00000020001	CPSF1	100	90.278	ENSCAPG00000014921	CPSF1	99	91.828	Cavia_aperea
ENSPCOG00000020001	CPSF1	100	91.545	ENSCPOG00000011448	CPSF1	100	91.545	Cavia_porcellus
ENSPCOG00000020001	CPSF1	100	93.832	ENSCCAG00000037658	CPSF1	100	93.832	Cebus_capucinus
ENSPCOG00000020001	CPSF1	100	95.098	ENSCATG00000037234	CPSF1	99	98.209	Cercocebus_atys
ENSPCOG00000020001	CPSF1	100	93.551	ENSCLAG00000012166	CPSF1	100	93.551	Chinchilla_lanigera
ENSPCOG00000020001	CPSF1	100	93.624	ENSCSAG00000008502	CPSF1	100	93.624	Chlorocebus_sabaeus
ENSPCOG00000020001	CPSF1	99	84.045	ENSCPBG00000018910	CPSF1	96	84.045	Chrysemys_picta_bellii
ENSPCOG00000020001	CPSF1	95	47.539	ENSCING00000000514	-	98	47.465	Ciona_intestinalis
ENSPCOG00000020001	CPSF1	99	46.479	ENSCSAVG00000002293	-	99	46.249	Ciona_savignyi
ENSPCOG00000020001	CPSF1	100	94.175	ENSCANG00000032760	CPSF1	100	94.175	Colobus_angolensis_palliatus
ENSPCOG00000020001	CPSF1	100	93.065	ENSCGRG00001016344	Cpsf1	100	93.065	Cricetulus_griseus_chok1gshd
ENSPCOG00000020001	CPSF1	100	91.054	ENSCGRG00000003118	Cpsf1	100	91.054	Cricetulus_griseus_crigri
ENSPCOG00000020001	CPSF1	100	76.852	ENSCSEG00000013464	cpsf1	100	74.202	Cynoglossus_semilaevis
ENSPCOG00000020001	CPSF1	100	79.803	ENSCVAG00000014059	cpsf1	100	79.803	Cyprinodon_variegatus
ENSPCOG00000020001	CPSF1	100	78.704	ENSDARG00000034178	cpsf1	100	76.256	Danio_rerio
ENSPCOG00000020001	CPSF1	68	96.812	ENSDNOG00000043654	CPSF1	94	96.812	Dasypus_novemcinctus
ENSPCOG00000020001	CPSF1	97	92.688	ENSDORG00000006278	Cpsf1	99	92.688	Dipodomys_ordii
ENSPCOG00000020001	CPSF1	99	45.205	FBgn0024698	Cpsf160	100	43.502	Drosophila_melanogaster
ENSPCOG00000020001	CPSF1	80	88.154	ENSETEG00000006022	CPSF1	83	88.154	Echinops_telfairi
ENSPCOG00000020001	CPSF1	90	62.121	ENSEBUG00000006844	-	97	64.660	Eptatretus_burgeri
ENSPCOG00000020001	CPSF1	100	93.495	ENSEASG00005010774	CPSF1	100	93.495	Equus_asinus_asinus
ENSPCOG00000020001	CPSF1	100	93.495	ENSECAG00000022209	CPSF1	100	93.495	Equus_caballus
ENSPCOG00000020001	CPSF1	100	90.871	ENSEEUG00000000471	CPSF1	100	90.871	Erinaceus_europaeus
ENSPCOG00000020001	CPSF1	100	79.630	ENSELUG00000012271	cpsf1	100	75.565	Esox_lucius
ENSPCOG00000020001	CPSF1	100	93.412	ENSFDAG00000016060	CPSF1	100	93.412	Fukomys_damarensis
ENSPCOG00000020001	CPSF1	100	75.463	ENSFHEG00000016801	cpsf1	100	73.862	Fundulus_heteroclitus
ENSPCOG00000020001	CPSF1	100	78.241	ENSGMOG00000000796	cpsf1	100	74.966	Gadus_morhua
ENSPCOG00000020001	CPSF1	94	83.929	ENSGAFG00000018890	cpsf1	98	83.929	Gambusia_affinis
ENSPCOG00000020001	CPSF1	100	78.241	ENSGACG00000008703	cpsf1	100	75.446	Gasterosteus_aculeatus
ENSPCOG00000020001	CPSF1	100	80.756	ENSGAGG00000004276	CPSF1	98	87.248	Gopherus_agassizii
ENSPCOG00000020001	CPSF1	100	94.608	ENSGGOG00000016185	CPSF1	100	94.608	Gorilla_gorilla
ENSPCOG00000020001	CPSF1	100	63.592	ENSGGOG00000040487	-	97	63.592	Gorilla_gorilla
ENSPCOG00000020001	CPSF1	100	79.167	ENSHBUG00000018900	cpsf1	100	76.299	Haplochromis_burtoni
ENSPCOG00000020001	CPSF1	100	93.204	ENSHGLG00000016139	CPSF1	100	93.204	Heterocephalus_glaber_female
ENSPCOG00000020001	CPSF1	100	93.135	ENSHGLG00100009750	CPSF1	100	93.135	Heterocephalus_glaber_male
ENSPCOG00000020001	CPSF1	100	77.778	ENSHCOG00000018509	cpsf1	100	73.978	Hippocampus_comes
ENSPCOG00000020001	CPSF1	100	80.093	ENSIPUG00000011259	cpsf1	100	73.265	Ictalurus_punctatus
ENSPCOG00000020001	CPSF1	100	90.278	ENSSTOG00000009957	CPSF1	99	93.286	Ictidomys_tridecemlineatus
ENSPCOG00000020001	CPSF1	100	92.580	ENSJJAG00000023002	Cpsf1	100	92.580	Jaculus_jaculus
ENSPCOG00000020001	CPSF1	100	75.926	ENSKMAG00000001940	cpsf1	99	71.562	Kryptolebias_marmoratus
ENSPCOG00000020001	CPSF1	100	78.704	ENSLBEG00000003601	cpsf1	100	74.408	Labrus_bergylta
ENSPCOG00000020001	CPSF1	100	81.944	ENSLACG00000000233	CPSF1	100	65.614	Latimeria_chalumnae
ENSPCOG00000020001	CPSF1	100	82.569	ENSLOCG00000008484	cpsf1	100	75.362	Lepisosteus_oculatus
ENSPCOG00000020001	CPSF1	100	89.352	ENSLAFG00000022601	CPSF1	100	92.346	Loxodonta_africana
ENSPCOG00000020001	CPSF1	100	95.098	ENSMFAG00000037013	CPSF1	99	97.910	Macaca_fascicularis
ENSPCOG00000020001	CPSF1	100	95.098	ENSMMUG00000007380	CPSF1	98	98.722	Macaca_mulatta
ENSPCOG00000020001	CPSF1	100	95.098	ENSMNEG00000043564	CPSF1	100	95.098	Macaca_nemestrina
ENSPCOG00000020001	CPSF1	100	95.098	ENSMLEG00000043010	CPSF1	99	97.910	Mandrillus_leucophaeus
ENSPCOG00000020001	CPSF1	100	80.093	ENSMAMG00000003803	cpsf1	100	75.203	Mastacembelus_armatus
ENSPCOG00000020001	CPSF1	100	79.167	ENSMZEG00005001168	cpsf1	100	74.238	Maylandia_zebra
ENSPCOG00000020001	CPSF1	100	92.996	ENSMAUG00000003601	Cpsf1	100	92.996	Mesocricetus_auratus
ENSPCOG00000020001	CPSF1	100	95.284	ENSMICG00000015767	CPSF1	100	95.284	Microcebus_murinus
ENSPCOG00000020001	CPSF1	100	92.996	ENSMOCG00000022758	Cpsf1	100	92.996	Microtus_ochrogaster
ENSPCOG00000020001	CPSF1	100	78.241	ENSMMOG00000021245	cpsf1	100	75.831	Mola_mola
ENSPCOG00000020001	CPSF1	100	89.241	ENSMODG00000010755	CPSF1	100	89.379	Monodelphis_domestica
ENSPCOG00000020001	CPSF1	100	79.167	ENSMALG00000020545	cpsf1	100	74.628	Monopterus_albus
ENSPCOG00000020001	CPSF1	100	93.481	MGP_CAROLIEiJ_G0019936	Cpsf1	100	93.481	Mus_caroli
ENSPCOG00000020001	CPSF1	100	93.412	ENSMUSG00000034022	Cpsf1	100	93.412	Mus_musculus
ENSPCOG00000020001	CPSF1	100	93.412	MGP_PahariEiJ_G0019946	Cpsf1	100	93.412	Mus_pahari
ENSPCOG00000020001	CPSF1	100	93.412	MGP_SPRETEiJ_G0020839	Cpsf1	100	93.412	Mus_spretus
ENSPCOG00000020001	CPSF1	94	92.370	ENSMPUG00000006419	CPSF1	93	92.370	Mustela_putorius_furo
ENSPCOG00000020001	CPSF1	78	96.855	ENSMLUG00000000667	-	88	96.855	Myotis_lucifugus
ENSPCOG00000020001	CPSF1	100	92.718	ENSNGAG00000022460	Cpsf1	100	92.718	Nannospalax_galili
ENSPCOG00000020001	CPSF1	100	79.167	ENSNBRG00000000813	cpsf1	100	71.607	Neolamprologus_brichardi
ENSPCOG00000020001	CPSF1	100	95.098	ENSNLEG00000010633	-	100	95.098	Nomascus_leucogenys
ENSPCOG00000020001	CPSF1	85	97.674	ENSMEUG00000014922	CPSF1	84	89.020	Notamacropus_eugenii
ENSPCOG00000020001	CPSF1	58	98.387	ENSOPRG00000004693	-	67	98.387	Ochotona_princeps
ENSPCOG00000020001	CPSF1	100	93.620	ENSODEG00000013995	CPSF1	100	93.620	Octodon_degus
ENSPCOG00000020001	CPSF1	100	78.704	ENSONIG00000007676	cpsf1	100	76.438	Oreochromis_niloticus
ENSPCOG00000020001	CPSF1	58	85.290	ENSOANG00000010716	CPSF1	88	85.290	Ornithorhynchus_anatinus
ENSPCOG00000020001	CPSF1	100	77.778	ENSORLG00000013544	cpsf1	100	74.185	Oryzias_latipes
ENSPCOG00000020001	CPSF1	100	77.778	ENSORLG00020021693	cpsf1	100	74.253	Oryzias_latipes_hni
ENSPCOG00000020001	CPSF1	100	77.778	ENSORLG00015009979	cpsf1	100	74.167	Oryzias_latipes_hsok
ENSPCOG00000020001	CPSF1	100	77.778	ENSOMEG00000011849	cpsf1	100	73.928	Oryzias_melastigma
ENSPCOG00000020001	CPSF1	100	95.149	ENSOGAG00000000315	CPSF1	100	95.149	Otolemur_garnettii
ENSPCOG00000020001	CPSF1	100	94.608	ENSPPAG00000019280	CPSF1	100	94.608	Pan_paniscus
ENSPCOG00000020001	CPSF1	100	62.621	ENSPTRG00000052516	-	97	62.621	Pan_troglodytes
ENSPCOG00000020001	CPSF1	100	94.608	ENSPTRG00000049288	-	100	94.608	Pan_troglodytes
ENSPCOG00000020001	CPSF1	100	94.608	ENSPTRG00000051253	-	100	94.608	Pan_troglodytes
ENSPCOG00000020001	CPSF1	100	95.098	ENSPANG00000015005	CPSF1	100	95.098	Papio_anubis
ENSPCOG00000020001	CPSF1	100	81.019	ENSPKIG00000002582	cpsf1	100	77.593	Paramormyrops_kingsleyae
ENSPCOG00000020001	CPSF1	100	75.926	ENSPMGG00000022177	-	100	75.926	Periophthalmus_magnuspinnatus
ENSPCOG00000020001	CPSF1	100	89.310	ENSPCIG00000009035	CPSF1	100	89.310	Phascolarctos_cinereus
ENSPCOG00000020001	CPSF1	100	76.389	ENSPFOG00000012870	cpsf1	100	73.275	Poecilia_formosa
ENSPCOG00000020001	CPSF1	100	75.926	ENSPREG00000016307	cpsf1	100	73.194	Poecilia_reticulata
ENSPCOG00000020001	CPSF1	100	86.300	ENSPPYG00000018973	CPSF1	100	86.300	Pongo_abelii
ENSPCOG00000020001	CPSF1	100	84.259	ENSPCAG00000011541	CPSF1	94	89.523	Procavia_capensis
ENSPCOG00000020001	CPSF1	96	89.372	ENSPVAG00000006761	CPSF1	91	90.312	Pteropus_vampyrus
ENSPCOG00000020001	CPSF1	100	79.167	ENSPNYG00000004906	cpsf1	100	75.308	Pundamilia_nyererei
ENSPCOG00000020001	CPSF1	100	74.826	ENSPNAG00000024395	cpsf1	100	74.826	Pygocentrus_nattereri
ENSPCOG00000020001	CPSF1	100	93.273	ENSRNOG00000030705	Cpsf1	100	93.273	Rattus_norvegicus
ENSPCOG00000020001	CPSF1	100	94.175	ENSRBIG00000044907	CPSF1	98	98.209	Rhinopithecus_bieti
ENSPCOG00000020001	CPSF1	100	94.175	ENSRROG00000044861	CPSF1	98	98.209	Rhinopithecus_roxellana
ENSPCOG00000020001	CPSF1	97	93.548	ENSSBOG00000027177	CPSF1	100	93.548	Saimiri_boliviensis_boliviensis
ENSPCOG00000020001	CPSF1	100	89.172	ENSSHAG00000006500	CPSF1	100	89.172	Sarcophilus_harrisii
ENSPCOG00000020001	CPSF1	100	81.481	ENSSFOG00015004606	cpsf1	100	77.673	Scleropages_formosus
ENSPCOG00000020001	CPSF1	100	80.556	ENSSMAG00000020547	cpsf1	100	74.899	Scophthalmus_maximus
ENSPCOG00000020001	CPSF1	100	80.093	ENSSDUG00000001100	cpsf1	100	76.194	Seriola_dumerili
ENSPCOG00000020001	CPSF1	100	80.093	ENSSLDG00000003619	cpsf1	100	76.247	Seriola_lalandi_dorsalis
ENSPCOG00000020001	CPSF1	89	95.833	ENSSARG00000003643	CPSF1	92	95.833	Sorex_araneus
ENSPCOG00000020001	CPSF1	100	88.235	ENSSPUG00000014396	CPSF1	100	88.235	Sphenodon_punctatus
ENSPCOG00000020001	CPSF1	100	80.093	ENSSPAG00000005349	cpsf1	100	74.848	Stegastes_partitus
ENSPCOG00000020001	CPSF1	100	92.595	ENSSSCG00000005906	CPSF1	100	92.595	Sus_scrofa
ENSPCOG00000020001	CPSF1	100	76.852	ENSTRUG00000013134	cpsf1	99	74.702	Takifugu_rubripes
ENSPCOG00000020001	CPSF1	100	76.147	ENSTNIG00000014027	cpsf1	100	75.411	Tetraodon_nigroviridis
ENSPCOG00000020001	CPSF1	78	89.119	ENSTBEG00000001756	CPSF1	91	89.119	Tupaia_belangeri
ENSPCOG00000020001	CPSF1	100	90.278	ENSTTRG00000001937	CPSF1	90	90.278	Tursiops_truncatus
ENSPCOG00000020001	CPSF1	97	92.995	ENSUAMG00000006476	CPSF1	98	92.995	Ursus_americanus
ENSPCOG00000020001	CPSF1	100	95.074	ENSVVUG00000005940	-	100	95.074	Vulpes_vulpes
ENSPCOG00000020001	CPSF1	100	75.926	ENSXCOG00000003608	cpsf1	100	74.584	Xiphophorus_couchianus
ENSPCOG00000020001	CPSF1	100	76.389	ENSXMAG00000005798	cpsf1	100	74.171	Xiphophorus_maculatus