EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000020722 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 94876 bases
Position: chrKQ023958.1:5659570-5754445
Accession: 105817547
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000017774	ResIII	PF04851.15	5.8e-13	1	1
ENSPCOP00000017773	ResIII	PF04851.15	7.3e-13	1	1
ENSPCOP00000017772	ResIII	PF04851.15	9.3e-13	1	1
ENSPCOP00000017774	DEAD	PF00270.29	6e-07	1	1
ENSPCOP00000017773	DEAD	PF00270.29	7.9e-07	1	1
ENSPCOP00000017772	DEAD	PF00270.29	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000028411	SMARCA1-201	2520	XM_012653259	ENSPCOP00000017772	839 (aa)	XP_012508713	A0A2K6FUX7
ENSPCOT00000028413	SMARCA1-203	1038	-	ENSPCOP00000017774	345 (aa)	-	A0A2K6FUX8
ENSPCOT00000028412	SMARCA1-202	2091	-	ENSPCOP00000017773	696 (aa)	-	A0A2K6FUW9

Gene Model

Click here to download ENSPCOG00000020722's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000020722's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000020722	SMARCA1	62	33.136	ENSPCOG00000026845	-	69	33.136
ENSPCOG00000020722	SMARCA1	62	31.977	ENSPCOG00000026714	ERCC6L2	73	31.977
ENSPCOG00000020722	SMARCA1	62	30.120	ENSPCOG00000015423	RAD54L	66	31.463
ENSPCOG00000020722	SMARCA1	72	39.170	ENSPCOG00000001089	CHD6	75	36.905
ENSPCOG00000020722	SMARCA1	67	48.207	ENSPCOG00000023985	HELLS	66	48.207
ENSPCOG00000020722	SMARCA1	94	78.319	ENSPCOG00000026744	SMARCA5	79	74.194

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000020722	SMARCA1	94	93.539	ENSG00000102038	SMARCA1	78	90.909	Homo_sapiens
ENSPCOG00000020722	SMARCA1	93	80.415	ENSAPOG00000016035	smarca5	77	78.125	Acanthochromis_polyacanthus
ENSPCOG00000020722	SMARCA1	94	91.631	ENSAMEG00000015218	SMARCA1	77	89.189	Ailuropoda_melanoleuca
ENSPCOG00000020722	SMARCA1	83	80.331	ENSACIG00000016982	smarca5	78	76.453	Amphilophus_citrinellus
ENSPCOG00000020722	SMARCA1	93	80.415	ENSAOCG00000015578	smarca5	75	78.125	Amphiprion_ocellaris
ENSPCOG00000020722	SMARCA1	93	80.415	ENSAPEG00000011117	smarca5	77	78.125	Amphiprion_percula
ENSPCOG00000020722	SMARCA1	93	80.386	ENSATEG00000012894	smarca5	77	76.636	Anabas_testudineus
ENSPCOG00000020722	SMARCA1	94	88.693	ENSAPLG00000013149	SMARCA1	79	84.626	Anas_platyrhynchos
ENSPCOG00000020722	SMARCA1	94	88.106	ENSACAG00000011376	SMARCA1	74	87.879	Anolis_carolinensis
ENSPCOG00000020722	SMARCA1	94	88.640	ENSANAG00000023098	SMARCA1	76	89.189	Aotus_nancymaae
ENSPCOG00000020722	SMARCA1	93	80.564	ENSACLG00000025356	smarca5	75	78.125	Astatotilapia_calliptera
ENSPCOG00000020722	SMARCA1	94	80.323	ENSAMXG00000005709	smarca5	75	76.872	Astyanax_mexicanus
ENSPCOG00000020722	SMARCA1	88	84.169	ENSAMXG00000011227	smarca1	82	90.323	Astyanax_mexicanus
ENSPCOG00000020722	SMARCA1	94	92.511	ENSBTAG00000002292	SMARCA1	78	89.474	Bos_taurus
ENSPCOG00000020722	SMARCA1	94	61.103	WBGene00002169	isw-1	74	58.124	Caenorhabditis_elegans
ENSPCOG00000020722	SMARCA1	94	93.539	ENSCJAG00000002868	SMARCA1	76	88.205	Callithrix_jacchus
ENSPCOG00000020722	SMARCA1	81	98.925	ENSCAFG00000018673	SMARCA1	81	89.189	Canis_familiaris
ENSPCOG00000020722	SMARCA1	94	93.686	ENSCAFG00020001751	SMARCA1	76	89.189	Canis_lupus_dingo
ENSPCOG00000020722	SMARCA1	94	92.658	ENSCHIG00000009837	SMARCA1	78	90.909	Capra_hircus
ENSPCOG00000020722	SMARCA1	94	93.501	ENSTSYG00000004240	SMARCA1	81	90.909	Carlito_syrichta
ENSPCOG00000020722	SMARCA1	94	92.183	ENSCPOG00000013601	SMARCA1	77	96.429	Cavia_porcellus
ENSPCOG00000020722	SMARCA1	94	96.818	ENSCCAG00000030817	SMARCA1	76	88.546	Cebus_capucinus
ENSPCOG00000020722	SMARCA1	94	93.539	ENSCATG00000015921	SMARCA1	78	90.909	Cercocebus_atys
ENSPCOG00000020722	SMARCA1	94	91.777	ENSCLAG00000002171	SMARCA1	78	90.909	Chinchilla_lanigera
ENSPCOG00000020722	SMARCA1	94	93.539	ENSCSAG00000008460	SMARCA1	76	89.189	Chlorocebus_sabaeus
ENSPCOG00000020722	SMARCA1	94	88.840	ENSCPBG00000001146	SMARCA1	74	84.832	Chrysemys_picta_bellii
ENSPCOG00000020722	SMARCA1	96	68.911	ENSCING00000004110	swi/snf	75	65.223	Ciona_intestinalis
ENSPCOG00000020722	SMARCA1	96	67.760	ENSCSAVG00000004620	-	91	67.970	Ciona_savignyi
ENSPCOG00000020722	SMARCA1	94	93.392	ENSCANG00000007183	SMARCA1	77	89.189	Colobus_angolensis_palliatus
ENSPCOG00000020722	SMARCA1	94	90.749	ENSCGRG00001010776	Smarca1	78	90.909	Cricetulus_griseus_chok1gshd
ENSPCOG00000020722	SMARCA1	94	91.163	ENSCGRG00000015301	Smarca1	82	90.909	Cricetulus_griseus_crigri
ENSPCOG00000020722	SMARCA1	93	80.267	ENSCSEG00000000328	smarca5	75	78.125	Cynoglossus_semilaevis
ENSPCOG00000020722	SMARCA1	93	79.822	ENSCVAG00000008668	smarca5	77	75.000	Cyprinodon_variegatus
ENSPCOG00000020722	SMARCA1	93	79.941	ENSDARG00000052348	smarca5	77	75.000	Danio_rerio
ENSPCOG00000020722	SMARCA1	93	81.034	ENSDARG00000012776	smarca1	77	83.871	Danio_rerio
ENSPCOG00000020722	SMARCA1	94	92.444	ENSDNOG00000004315	SMARCA1	78	86.842	Dasypus_novemcinctus
ENSPCOG00000020722	SMARCA1	94	91.189	ENSDORG00000009270	Smarca1	78	90.909	Dipodomys_ordii
ENSPCOG00000020722	SMARCA1	94	69.781	FBgn0011604	Iswi	78	74.194	Drosophila_melanogaster
ENSPCOG00000020722	SMARCA1	73	94.545	ENSETEG00000017426	SMARCA1	66	94.545	Echinops_telfairi
ENSPCOG00000020722	SMARCA1	93	78.306	ENSEBUG00000001239	smarca5	80	73.102	Eptatretus_burgeri
ENSPCOG00000020722	SMARCA1	94	91.445	ENSEASG00005008218	SMARCA1	74	91.631	Equus_asinus_asinus
ENSPCOG00000020722	SMARCA1	94	93.098	ENSECAG00000012106	SMARCA1	73	97.857	Equus_caballus
ENSPCOG00000020722	SMARCA1	81	96.774	ENSEEUG00000014927	SMARCA1	68	97.020	Erinaceus_europaeus
ENSPCOG00000020722	SMARCA1	93	83.407	ENSELUG00000010515	smarca1	86	77.778	Esox_lucius
ENSPCOG00000020722	SMARCA1	94	93.392	ENSFCAG00000018496	SMARCA1	77	89.189	Felis_catus
ENSPCOG00000020722	SMARCA1	94	88.954	ENSFALG00000000209	SMARCA1	83	82.692	Ficedula_albicollis
ENSPCOG00000020722	SMARCA1	94	90.909	ENSFDAG00000009818	SMARCA1	81	90.909	Fukomys_damarensis
ENSPCOG00000020722	SMARCA1	94	80.030	ENSFHEG00000007687	smarca5	74	76.502	Fundulus_heteroclitus
ENSPCOG00000020722	SMARCA1	94	88.840	ENSGALG00000008431	SMARCA1	77	84.626	Gallus_gallus
ENSPCOG00000020722	SMARCA1	93	80.119	ENSGAFG00000017731	smarca5	75	76.502	Gambusia_affinis
ENSPCOG00000020722	SMARCA1	94	89.102	ENSGAGG00000023575	SMARCA1	80	84.626	Gopherus_agassizii
ENSPCOG00000020722	SMARCA1	96	87.879	ENSGGOG00000012841	-	93	87.879	Gorilla_gorilla
ENSPCOG00000020722	SMARCA1	94	91.189	ENSHGLG00000003080	SMARCA1	78	90.909	Heterocephalus_glaber_female
ENSPCOG00000020722	SMARCA1	94	91.593	ENSHGLG00100001102	SMARCA1	87	95.760	Heterocephalus_glaber_male
ENSPCOG00000020722	SMARCA1	93	80.415	ENSHCOG00000005458	smarca5	75	78.125	Hippocampus_comes
ENSPCOG00000020722	SMARCA1	94	80.000	ENSIPUG00000005229	SMARCA5	77	76.203	Ictalurus_punctatus
ENSPCOG00000020722	SMARCA1	93	83.111	ENSIPUG00000016905	Smarca1	82	83.871	Ictalurus_punctatus
ENSPCOG00000020722	SMARCA1	94	93.363	ENSSTOG00000014524	SMARCA1	78	90.909	Ictidomys_tridecemlineatus
ENSPCOG00000020722	SMARCA1	94	92.342	ENSJJAG00000002593	Smarca1	78	88.636	Jaculus_jaculus
ENSPCOG00000020722	SMARCA1	93	80.119	ENSKMAG00000003777	smarca5	75	78.125	Kryptolebias_marmoratus
ENSPCOG00000020722	SMARCA1	93	79.822	ENSLBEG00000013295	SMARCA1	77	74.548	Labrus_bergylta
ENSPCOG00000020722	SMARCA1	93	79.822	ENSLBEG00000018112	smarca5	75	78.125	Labrus_bergylta
ENSPCOG00000020722	SMARCA1	94	86.667	ENSLACG00000016697	SMARCA1	79	80.897	Latimeria_chalumnae
ENSPCOG00000020722	SMARCA1	93	86.756	ENSLOCG00000014591	smarca1	79	87.500	Lepisosteus_oculatus
ENSPCOG00000020722	SMARCA1	93	92.868	ENSLAFG00000000896	SMARCA1	82	90.909	Loxodonta_africana
ENSPCOG00000020722	SMARCA1	94	93.953	ENSMFAG00000002117	SMARCA1	81	90.909	Macaca_fascicularis
ENSPCOG00000020722	SMARCA1	94	93.796	ENSMMUG00000008818	SMARCA1	84	88.273	Macaca_mulatta
ENSPCOG00000020722	SMARCA1	94	93.953	ENSMNEG00000041768	SMARCA1	81	90.909	Macaca_nemestrina
ENSPCOG00000020722	SMARCA1	94	93.539	ENSMLEG00000043198	SMARCA1	77	89.189	Mandrillus_leucophaeus
ENSPCOG00000020722	SMARCA1	93	80.712	ENSMAMG00000014294	smarca5	75	78.125	Mastacembelus_armatus
ENSPCOG00000020722	SMARCA1	93	80.564	ENSMZEG00005009369	smarca5	75	78.125	Maylandia_zebra
ENSPCOG00000020722	SMARCA1	94	87.302	ENSMGAG00000007042	SMARCA1	78	83.289	Meleagris_gallopavo
ENSPCOG00000020722	SMARCA1	94	91.458	ENSMAUG00000008133	Smarca1	78	90.909	Mesocricetus_auratus
ENSPCOG00000020722	SMARCA1	94	94.420	ENSMICG00000015768	SMARCA1	77	89.189	Microcebus_murinus
ENSPCOG00000020722	SMARCA1	94	91.311	ENSMOCG00000009464	Smarca1	78	90.909	Microtus_ochrogaster
ENSPCOG00000020722	SMARCA1	97	78.192	ENSMMOG00000005547	smarca5	79	78.125	Mola_mola
ENSPCOG00000020722	SMARCA1	94	87.959	ENSMODG00000013187	-	78	82.436	Monodelphis_domestica
ENSPCOG00000020722	SMARCA1	93	79.970	ENSMALG00000002081	smarca5	78	75.364	Monopterus_albus
ENSPCOG00000020722	SMARCA1	94	91.605	MGP_CAROLIEiJ_G0033034	Smarca1	89	90.247	Mus_caroli
ENSPCOG00000020722	SMARCA1	94	91.605	ENSMUSG00000031099	Smarca1	89	90.247	Mus_musculus
ENSPCOG00000020722	SMARCA1	94	91.605	MGP_PahariEiJ_G0031579	Smarca1	89	90.247	Mus_pahari
ENSPCOG00000020722	SMARCA1	94	91.605	MGP_SPRETEiJ_G0034192	Smarca1	89	90.247	Mus_spretus
ENSPCOG00000020722	SMARCA1	94	91.775	ENSMPUG00000017423	SMARCA1	72	89.189	Mustela_putorius_furo
ENSPCOG00000020722	SMARCA1	94	90.504	ENSMLUG00000029614	SMARCA1	74	86.486	Myotis_lucifugus
ENSPCOG00000020722	SMARCA1	94	92.489	ENSNGAG00000006492	Smarca1	78	90.909	Nannospalax_galili
ENSPCOG00000020722	SMARCA1	93	80.712	ENSNBRG00000004463	smarca5	78	78.125	Neolamprologus_brichardi
ENSPCOG00000020722	SMARCA1	94	93.759	ENSNLEG00000015179	SMARCA1	82	90.909	Nomascus_leucogenys
ENSPCOG00000020722	SMARCA1	94	80.231	ENSMEUG00000008819	SMARCA1	79	77.309	Notamacropus_eugenii
ENSPCOG00000020722	SMARCA1	94	89.899	ENSODEG00000012163	SMARCA1	79	90.909	Octodon_degus
ENSPCOG00000020722	SMARCA1	93	80.712	ENSONIG00000009993	smarca5	75	78.125	Oreochromis_niloticus
ENSPCOG00000020722	SMARCA1	94	89.396	ENSOANG00000002862	SMARCA1	83	83.718	Ornithorhynchus_anatinus
ENSPCOG00000020722	SMARCA1	94	91.630	ENSOCUG00000001047	SMARCA1	76	89.189	Oryctolagus_cuniculus
ENSPCOG00000020722	SMARCA1	93	80.119	ENSORLG00000021998	smarca5	75	78.125	Oryzias_latipes
ENSPCOG00000020722	SMARCA1	93	80.267	ENSORLG00020017679	smarca5	75	78.125	Oryzias_latipes_hni
ENSPCOG00000020722	SMARCA1	93	80.119	ENSORLG00015017210	smarca5	75	78.125	Oryzias_latipes_hsok
ENSPCOG00000020722	SMARCA1	93	80.119	ENSOMEG00000000086	smarca5	75	78.125	Oryzias_melastigma
ENSPCOG00000020722	SMARCA1	94	92.208	ENSOGAG00000004399	SMARCA1	78	88.636	Otolemur_garnettii
ENSPCOG00000020722	SMARCA1	94	92.658	ENSOARG00000014638	SMARCA1	82	89.189	Ovis_aries
ENSPCOG00000020722	SMARCA1	94	93.539	ENSPPAG00000034647	SMARCA1	77	89.189	Pan_paniscus
ENSPCOG00000020722	SMARCA1	94	93.539	ENSPPRG00000008929	SMARCA1	77	89.189	Panthera_pardus
ENSPCOG00000020722	SMARCA1	94	90.544	ENSPTIG00000000915	SMARCA1	79	89.189	Panthera_tigris_altaica
ENSPCOG00000020722	SMARCA1	94	93.539	ENSPTRG00000049876	SMARCA1	78	90.909	Pan_troglodytes
ENSPCOG00000020722	SMARCA1	94	93.539	ENSPANG00000003871	SMARCA1	77	89.189	Papio_anubis
ENSPCOG00000020722	SMARCA1	94	82.206	ENSPKIG00000013411	smarca1	82	78.378	Paramormyrops_kingsleyae
ENSPCOG00000020722	SMARCA1	94	88.807	ENSPSIG00000010101	SMARCA1	80	84.358	Pelodiscus_sinensis
ENSPCOG00000020722	SMARCA1	94	92.047	ENSPEMG00000017503	Smarca1	78	90.909	Peromyscus_maniculatus_bairdii
ENSPCOG00000020722	SMARCA1	94	88.399	ENSPCIG00000015460	SMARCA1	78	84.513	Phascolarctos_cinereus
ENSPCOG00000020722	SMARCA1	93	80.267	ENSPFOG00000007649	smarca5	75	76.636	Poecilia_formosa
ENSPCOG00000020722	SMARCA1	93	80.267	ENSPLAG00000003363	smarca5	75	76.636	Poecilia_latipinna
ENSPCOG00000020722	SMARCA1	93	80.119	ENSPMEG00000019849	smarca5	75	76.502	Poecilia_mexicana
ENSPCOG00000020722	SMARCA1	93	80.119	ENSPREG00000023250	smarca5	75	76.502	Poecilia_reticulata
ENSPCOG00000020722	SMARCA1	94	89.280	ENSPPYG00000020703	SMARCA1	76	89.189	Pongo_abelii
ENSPCOG00000020722	SMARCA1	86	94.309	ENSPVAG00000003805	SMARCA1	73	94.309	Pteropus_vampyrus
ENSPCOG00000020722	SMARCA1	81	85.305	ENSPNYG00000012299	smarca5	88	81.166	Pundamilia_nyererei
ENSPCOG00000020722	SMARCA1	94	91.483	ENSRNOG00000003762	Smarca1	76	89.189	Rattus_norvegicus
ENSPCOG00000020722	SMARCA1	94	93.392	ENSRROG00000034167	SMARCA1	77	89.189	Rhinopithecus_roxellana
ENSPCOG00000020722	SMARCA1	94	93.392	ENSSBOG00000020641	SMARCA1	82	89.189	Saimiri_boliviensis_boliviensis
ENSPCOG00000020722	SMARCA1	93	82.467	ENSSHAG00000013518	SMARCA1	80	78.400	Sarcophilus_harrisii
ENSPCOG00000020722	SMARCA1	93	85.185	ENSSFOG00015009043	smarca1	79	82.857	Scleropages_formosus
ENSPCOG00000020722	SMARCA1	94	79.941	ENSSFOG00015016794	smarca5	80	76.203	Scleropages_formosus
ENSPCOG00000020722	SMARCA1	93	79.525	ENSSMAG00000004801	smarca5	75	78.125	Scophthalmus_maximus
ENSPCOG00000020722	SMARCA1	93	80.267	ENSSDUG00000020690	smarca5	75	78.125	Seriola_dumerili
ENSPCOG00000020722	SMARCA1	93	80.267	ENSSLDG00000025190	smarca5	75	78.125	Seriola_lalandi_dorsalis
ENSPCOG00000020722	SMARCA1	73	96.356	ENSSARG00000000842	SMARCA1	58	96.356	Sorex_araneus
ENSPCOG00000020722	SMARCA1	94	87.959	ENSSPUG00000000590	SMARCA1	76	83.712	Sphenodon_punctatus
ENSPCOG00000020722	SMARCA1	94	79.912	ENSSPAG00000002894	smarca5	76	76.445	Stegastes_partitus
ENSPCOG00000020722	SMARCA1	94	93.215	ENSSSCG00000012649	SMARCA1	77	90.909	Sus_scrofa
ENSPCOG00000020722	SMARCA1	94	88.840	ENSTGUG00000003899	-	82	82.821	Taeniopygia_guttata
ENSPCOG00000020722	SMARCA1	97	78.479	ENSTRUG00000014094	smarca5	75	76.636	Takifugu_rubripes
ENSPCOG00000020722	SMARCA1	97	76.218	ENSTNIG00000017717	smarca5	74	78.125	Tetraodon_nigroviridis
ENSPCOG00000020722	SMARCA1	87	90.909	ENSTBEG00000014973	SMARCA1	77	90.909	Tupaia_belangeri
ENSPCOG00000020722	SMARCA1	94	87.590	ENSTTRG00000006168	SMARCA1	83	90.909	Tursiops_truncatus
ENSPCOG00000020722	SMARCA1	94	93.098	ENSUAMG00000020201	SMARCA1	76	89.189	Ursus_americanus
ENSPCOG00000020722	SMARCA1	94	93.058	ENSUMAG00000004073	SMARCA1	94	91.250	Ursus_maritimus
ENSPCOG00000020722	SMARCA1	81	98.208	ENSVPAG00000010492	-	65	91.346	Vicugna_pacos
ENSPCOG00000020722	SMARCA1	94	93.833	ENSVVUG00000008878	SMARCA1	84	88.333	Vulpes_vulpes
ENSPCOG00000020722	SMARCA1	94	86.364	ENSXETG00000001526	smarca1	78	83.871	Xenopus_tropicalis
ENSPCOG00000020722	SMARCA1	93	79.970	ENSXCOG00000011170	smarca5	77	76.368	Xiphophorus_couchianus
ENSPCOG00000020722	SMARCA1	93	79.970	ENSXMAG00000009678	smarca5	80	76.331	Xiphophorus_maculatus