EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCOG00000020925 (Gene tree)
Gene ID: 105817368
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 228875 bases
Position: chrKQ023836.1:896776-1125650
Accession: 105817368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000018111	EST1	PF10374.9	3.4e-15	1	1
ENSPCOP00000018111	EST1_DNA_bind	PF10373.9	1.5e-60	1	1
ENSPCOP00000018111	PIN_4	PF13638.6	8.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000028752	SMG6-201	5991	XM_012653041	ENSPCOP00000018111	1419 (aa)	XP_012508495	A0A2K6FVU0

Gene Model

Click here to download ENSPCOG00000020925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000020925's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000020925	SMG6	100	94.292	ENSG00000070366	SMG6	100	98.551	Homo_sapiens
ENSPCOG00000020925	SMG6	83	54.913	ENSAPOG00000019448	smg6	74	54.758	Acanthochromis_polyacanthus
ENSPCOG00000020925	SMG6	100	94.433	ENSAMEG00000007632	SMG6	100	94.433	Ailuropoda_melanoleuca
ENSPCOG00000020925	SMG6	71	59.303	ENSAOCG00000002630	smg6	74	54.766	Amphiprion_ocellaris
ENSPCOG00000020925	SMG6	83	54.805	ENSAPEG00000019101	smg6	74	54.922	Amphiprion_percula
ENSPCOG00000020925	SMG6	83	55.199	ENSATEG00000006483	smg6	73	55.286	Anabas_testudineus
ENSPCOG00000020925	SMG6	87	56.940	ENSACAG00000011783	SMG6	99	57.808	Anolis_carolinensis
ENSPCOG00000020925	SMG6	100	94.574	ENSANAG00000035760	SMG6	100	94.574	Aotus_nancymaae
ENSPCOG00000020925	SMG6	71	59.171	ENSACLG00000005288	smg6	82	53.869	Astatotilapia_calliptera
ENSPCOG00000020925	SMG6	68	63.169	ENSAMXG00000017326	smg6	99	50.415	Astyanax_mexicanus
ENSPCOG00000020925	SMG6	100	93.939	ENSBTAG00000000267	SMG6	100	93.939	Bos_taurus
ENSPCOG00000020925	SMG6	100	94.574	ENSCJAG00000001820	SMG6	100	94.574	Callithrix_jacchus
ENSPCOG00000020925	SMG6	100	94.292	ENSCAFG00000019260	SMG6	100	94.292	Canis_familiaris
ENSPCOG00000020925	SMG6	100	94.292	ENSCAFG00020009770	SMG6	100	94.292	Canis_lupus_dingo
ENSPCOG00000020925	SMG6	100	93.587	ENSCHIG00000021998	SMG6	100	93.587	Capra_hircus
ENSPCOG00000020925	SMG6	100	94.715	ENSTSYG00000003406	SMG6	100	97.847	Carlito_syrichta
ENSPCOG00000020925	SMG6	98	78.273	ENSCAPG00000016197	SMG6	99	83.372	Cavia_aperea
ENSPCOG00000020925	SMG6	100	92.254	ENSCPOG00000014878	SMG6	100	92.254	Cavia_porcellus
ENSPCOG00000020925	SMG6	100	94.644	ENSCCAG00000035801	SMG6	100	94.644	Cebus_capucinus
ENSPCOG00000020925	SMG6	100	94.503	ENSCATG00000031956	SMG6	100	94.503	Cercocebus_atys
ENSPCOG00000020925	SMG6	100	94.010	ENSCLAG00000006748	SMG6	100	94.010	Chinchilla_lanigera
ENSPCOG00000020925	SMG6	100	94.996	ENSCSAG00000013800	SMG6	100	94.996	Chlorocebus_sabaeus
ENSPCOG00000020925	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSPCOG00000020925	SMG6	100	72.778	ENSCPBG00000020369	SMG6	100	73.333	Chrysemys_picta_bellii
ENSPCOG00000020925	SMG6	98	94.672	ENSCANG00000031764	SMG6	100	97.652	Colobus_angolensis_palliatus
ENSPCOG00000020925	SMG6	55	89.642	ENSCGRG00001019595	Smg6	100	89.642	Cricetulus_griseus_chok1gshd
ENSPCOG00000020925	SMG6	98	86.383	ENSCGRG00000007782	Smg6	100	86.527	Cricetulus_griseus_crigri
ENSPCOG00000020925	SMG6	96	52.999	ENSCSEG00000012757	smg6	87	52.914	Cynoglossus_semilaevis
ENSPCOG00000020925	SMG6	72	57.790	ENSCVAG00000012789	smg6	74	53.846	Cyprinodon_variegatus
ENSPCOG00000020925	SMG6	100	50.167	ENSDARG00000100481	smg6	100	51.004	Danio_rerio
ENSPCOG00000020925	SMG6	100	93.517	ENSDNOG00000048283	SMG6	100	93.517	Dasypus_novemcinctus
ENSPCOG00000020925	SMG6	100	90.246	ENSDORG00000016614	Smg6	94	99.099	Dipodomys_ordii
ENSPCOG00000020925	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSPCOG00000020925	SMG6	73	50.146	ENSEBUG00000005059	smg6	73	48.369	Eptatretus_burgeri
ENSPCOG00000020925	SMG6	99	94.919	ENSEASG00005009318	SMG6	99	94.919	Equus_asinus_asinus
ENSPCOG00000020925	SMG6	99	94.637	ENSECAG00000006519	SMG6	99	94.637	Equus_caballus
ENSPCOG00000020925	SMG6	100	82.875	ENSEEUG00000003493	SMG6	100	82.875	Erinaceus_europaeus
ENSPCOG00000020925	SMG6	71	60.370	ENSELUG00000005934	smg6	68	55.910	Esox_lucius
ENSPCOG00000020925	SMG6	100	95.419	ENSFCAG00000028817	SMG6	100	95.419	Felis_catus
ENSPCOG00000020925	SMG6	98	71.926	ENSFALG00000006538	SMG6	100	71.997	Ficedula_albicollis
ENSPCOG00000020925	SMG6	100	93.658	ENSFDAG00000015106	SMG6	100	93.658	Fukomys_damarensis
ENSPCOG00000020925	SMG6	83	52.960	ENSFHEG00000013282	smg6	75	53.230	Fundulus_heteroclitus
ENSPCOG00000020925	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSPCOG00000020925	SMG6	100	71.903	ENSGALG00000003108	SMG6	98	72.122	Gallus_gallus
ENSPCOG00000020925	SMG6	83	53.683	ENSGAFG00000000379	smg6	74	53.948	Gambusia_affinis
ENSPCOG00000020925	SMG6	90	53.903	ENSGACG00000020521	smg6	99	53.835	Gasterosteus_aculeatus
ENSPCOG00000020925	SMG6	98	72.353	ENSGAGG00000025617	SMG6	100	72.921	Gopherus_agassizii
ENSPCOG00000020925	SMG6	100	95.278	ENSGGOG00000017156	SMG6	100	95.278	Gorilla_gorilla
ENSPCOG00000020925	SMG6	86	53.146	ENSHBUG00000021311	smg6	76	54.221	Haplochromis_burtoni
ENSPCOG00000020925	SMG6	100	93.174	ENSHGLG00000012882	SMG6	100	93.174	Heterocephalus_glaber_female
ENSPCOG00000020925	SMG6	100	93.244	ENSHGLG00100017815	SMG6	100	93.244	Heterocephalus_glaber_male
ENSPCOG00000020925	SMG6	71	59.160	ENSHCOG00000008761	smg6	97	53.647	Hippocampus_comes
ENSPCOG00000020925	SMG6	96	55.189	ENSIPUG00000012493	smg6	88	54.241	Ictalurus_punctatus
ENSPCOG00000020925	SMG6	100	95.490	ENSSTOG00000028127	SMG6	100	95.490	Ictidomys_tridecemlineatus
ENSPCOG00000020925	SMG6	79	90.544	ENSJJAG00000015367	Smg6	95	88.562	Jaculus_jaculus
ENSPCOG00000020925	SMG6	74	58.584	ENSKMAG00000000279	smg6	78	53.561	Kryptolebias_marmoratus
ENSPCOG00000020925	SMG6	86	53.040	ENSLBEG00000002184	smg6	76	53.198	Labrus_bergylta
ENSPCOG00000020925	SMG6	55	57.543	ENSLACG00000000806	-	98	58.242	Latimeria_chalumnae
ENSPCOG00000020925	SMG6	73	65.108	ENSLOCG00000006448	smg6	89	59.098	Lepisosteus_oculatus
ENSPCOG00000020925	SMG6	100	93.587	ENSLAFG00000001261	SMG6	100	93.587	Loxodonta_africana
ENSPCOG00000020925	SMG6	100	94.996	ENSMFAG00000003394	SMG6	100	94.996	Macaca_fascicularis
ENSPCOG00000020925	SMG6	100	94.926	ENSMMUG00000023161	SMG6	100	94.926	Macaca_mulatta
ENSPCOG00000020925	SMG6	100	90.091	ENSMNEG00000044592	SMG6	100	90.091	Macaca_nemestrina
ENSPCOG00000020925	SMG6	93	97.744	ENSMLEG00000029353	SMG6	100	97.744	Mandrillus_leucophaeus
ENSPCOG00000020925	SMG6	83	55.790	ENSMAMG00000020119	smg6	79	55.756	Mastacembelus_armatus
ENSPCOG00000020925	SMG6	71	59.191	ENSMZEG00005024736	smg6	76	54.227	Maylandia_zebra
ENSPCOG00000020925	SMG6	74	66.353	ENSMGAG00000005401	-	99	66.353	Meleagris_gallopavo
ENSPCOG00000020925	SMG6	100	98.591	ENSMICG00000012913	SMG6	100	98.591	Microcebus_murinus
ENSPCOG00000020925	SMG6	100	47.699	ENSMMOG00000010883	smg6	100	48.250	Mola_mola
ENSPCOG00000020925	SMG6	100	86.287	ENSMODG00000010622	SMG6	100	86.287	Monodelphis_domestica
ENSPCOG00000020925	SMG6	83	54.545	ENSMALG00000001106	smg6	73	54.749	Monopterus_albus
ENSPCOG00000020925	SMG6	100	92.319	MGP_CAROLIEiJ_G0016729	Smg6	100	92.319	Mus_caroli
ENSPCOG00000020925	SMG6	100	92.107	ENSMUSG00000038290	Smg6	96	96.507	Mus_musculus
ENSPCOG00000020925	SMG6	100	91.966	MGP_PahariEiJ_G0017866	Smg6	96	96.507	Mus_pahari
ENSPCOG00000020925	SMG6	100	92.107	MGP_SPRETEiJ_G0017572	Smg6	97	95.671	Mus_spretus
ENSPCOG00000020925	SMG6	100	94.362	ENSMPUG00000013046	SMG6	100	94.362	Mustela_putorius_furo
ENSPCOG00000020925	SMG6	100	94.080	ENSMLUG00000005739	SMG6	100	94.080	Myotis_lucifugus
ENSPCOG00000020925	SMG6	98	92.081	ENSNGAG00000007287	Smg6	100	92.081	Nannospalax_galili
ENSPCOG00000020925	SMG6	86	52.595	ENSNBRG00000009511	smg6	83	53.430	Neolamprologus_brichardi
ENSPCOG00000020925	SMG6	98	94.548	ENSNLEG00000017171	SMG6	100	98.239	Nomascus_leucogenys
ENSPCOG00000020925	SMG6	98	82.256	ENSMEUG00000015804	SMG6	100	82.256	Notamacropus_eugenii
ENSPCOG00000020925	SMG6	62	92.308	ENSOPRG00000000579	SMG6	85	97.895	Ochotona_princeps
ENSPCOG00000020925	SMG6	100	87.122	ENSODEG00000008038	SMG6	100	85.875	Octodon_degus
ENSPCOG00000020925	SMG6	100	51.072	ENSONIG00000005594	smg6	100	51.703	Oreochromis_niloticus
ENSPCOG00000020925	SMG6	100	94.089	ENSOCUG00000013018	SMG6	100	94.300	Oryctolagus_cuniculus
ENSPCOG00000020925	SMG6	83	54.288	ENSORLG00000003317	smg6	74	54.937	Oryzias_latipes
ENSPCOG00000020925	SMG6	83	54.295	ENSORLG00020015343	smg6	74	54.724	Oryzias_latipes_hni
ENSPCOG00000020925	SMG6	83	54.324	ENSORLG00015020454	smg6	74	54.894	Oryzias_latipes_hsok
ENSPCOG00000020925	SMG6	83	53.307	ENSOMEG00000010838	smg6	75	53.828	Oryzias_melastigma
ENSPCOG00000020925	SMG6	100	96.197	ENSOGAG00000004483	SMG6	100	96.197	Otolemur_garnettii
ENSPCOG00000020925	SMG6	100	91.761	ENSOARG00000015076	SMG6	100	93.357	Ovis_aries
ENSPCOG00000020925	SMG6	100	95.349	ENSPPAG00000043296	SMG6	100	95.349	Pan_paniscus
ENSPCOG00000020925	SMG6	100	95.490	ENSPPRG00000014581	SMG6	100	95.490	Panthera_pardus
ENSPCOG00000020925	SMG6	98	95.596	ENSPTIG00000008925	SMG6	100	98.434	Panthera_tigris_altaica
ENSPCOG00000020925	SMG6	100	95.278	ENSPTRG00000008544	SMG6	100	98.434	Pan_troglodytes
ENSPCOG00000020925	SMG6	100	94.785	ENSPANG00000024588	SMG6	100	94.785	Papio_anubis
ENSPCOG00000020925	SMG6	89	71.094	ENSPSIG00000006660	SMG6	96	71.172	Pelodiscus_sinensis
ENSPCOG00000020925	SMG6	98	60.742	ENSPMGG00000000844	smg6	100	60.742	Periophthalmus_magnuspinnatus
ENSPCOG00000020925	SMG6	100	93.798	ENSPEMG00000020707	Smg6	98	96.507	Peromyscus_maniculatus_bairdii
ENSPCOG00000020925	SMG6	100	51.546	ENSPFOG00000012035	smg6	100	51.174	Poecilia_formosa
ENSPCOG00000020925	SMG6	77	56.213	ENSPLAG00000017660	smg6	74	53.670	Poecilia_latipinna
ENSPCOG00000020925	SMG6	77	56.715	ENSPMEG00000000258	smg6	74	53.973	Poecilia_mexicana
ENSPCOG00000020925	SMG6	94	53.961	ENSPREG00000010066	smg6	85	53.961	Poecilia_reticulata
ENSPCOG00000020925	SMG6	100	89.944	ENSPPYG00000007790	SMG6	100	89.944	Pongo_abelii
ENSPCOG00000020925	SMG6	100	89.288	ENSPCAG00000000552	SMG6	100	89.288	Procavia_capensis
ENSPCOG00000020925	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSPCOG00000020925	SMG6	86	54.304	ENSPNYG00000024151	smg6	81	55.931	Pundamilia_nyererei
ENSPCOG00000020925	SMG6	85	52.913	ENSPNAG00000015480	smg6	87	63.196	Pygocentrus_nattereri
ENSPCOG00000020925	SMG6	100	92.671	ENSRNOG00000003041	Smg6	97	96.830	Rattus_norvegicus
ENSPCOG00000020925	SMG6	100	94.785	ENSRBIG00000024746	SMG6	100	94.785	Rhinopithecus_bieti
ENSPCOG00000020925	SMG6	100	94.856	ENSRROG00000030423	SMG6	100	97.260	Rhinopithecus_roxellana
ENSPCOG00000020925	SMG6	100	94.503	ENSSBOG00000022518	SMG6	100	92.812	Saimiri_boliviensis_boliviensis
ENSPCOG00000020925	SMG6	98	85.438	ENSSHAG00000010045	SMG6	98	85.438	Sarcophilus_harrisii
ENSPCOG00000020925	SMG6	74	61.643	ENSSFOG00015005436	smg6	70	57.674	Scleropages_formosus
ENSPCOG00000020925	SMG6	83	55.322	ENSSMAG00000019777	smg6	73	54.934	Scophthalmus_maximus
ENSPCOG00000020925	SMG6	83	55.008	ENSSDUG00000016412	smg6	79	52.558	Seriola_dumerili
ENSPCOG00000020925	SMG6	80	54.133	ENSSLDG00000020747	smg6	83	51.662	Seriola_lalandi_dorsalis
ENSPCOG00000020925	SMG6	99	69.937	ENSSPUG00000007152	SMG6	99	69.937	Sphenodon_punctatus
ENSPCOG00000020925	SMG6	71	58.899	ENSSPAG00000015633	smg6	74	54.553	Stegastes_partitus
ENSPCOG00000020925	SMG6	100	93.873	ENSSSCG00000017826	SMG6	100	93.873	Sus_scrofa
ENSPCOG00000020925	SMG6	100	72.440	ENSTGUG00000005836	SMG6	100	72.581	Taeniopygia_guttata
ENSPCOG00000020925	SMG6	83	54.639	ENSTRUG00000000358	smg6	81	55.109	Takifugu_rubripes
ENSPCOG00000020925	SMG6	100	50.166	ENSTNIG00000016164	smg6	100	50.132	Tetraodon_nigroviridis
ENSPCOG00000020925	SMG6	100	90.134	ENSTBEG00000011424	SMG6	100	90.134	Tupaia_belangeri
ENSPCOG00000020925	SMG6	91	92.121	ENSTTRG00000001175	SMG6	91	92.121	Tursiops_truncatus
ENSPCOG00000020925	SMG6	100	94.515	ENSUAMG00000025152	SMG6	100	94.524	Ursus_americanus
ENSPCOG00000020925	SMG6	98	95.018	ENSUMAG00000009306	SMG6	100	95.018	Ursus_maritimus
ENSPCOG00000020925	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSPCOG00000020925	SMG6	100	94.080	ENSVVUG00000021727	SMG6	100	94.080	Vulpes_vulpes
ENSPCOG00000020925	SMG6	98	59.324	ENSXETG00000023799	SMG6	100	59.034	Xenopus_tropicalis
ENSPCOG00000020925	SMG6	83	54.069	ENSXMAG00000010321	smg6	74	54.027	Xiphophorus_maculatus