EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPCOG00000021060 (Gene tree)
Gene ID: 105810691
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 27138 bases
Position: chrKQ021714.1:2688006-2715143
Accession: 105810691
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000018339	zf-C2H2	PF00096.26	1.8e-18	1	2
ENSPCOP00000018339	zf-C2H2	PF00096.26	1.8e-18	2	2
ENSPCOP00000018339	zf-met	PF12874.7	0.00035	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000028980	PRDM4-201	4195	XM_012644723	ENSPCOP00000018339	801 (aa)	XP_012500177	A0A2K6FWJ6

Gene Model

Click here to download ENSPCOG00000021060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000021060's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPCOG00000021060	PRDM4	51	40.476	ENSPCOG00000017473	PRDM15	57	38.043

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000021060	PRDM4	100	96.879	ENSG00000110851	PRDM4	100	100.000	Homo_sapiens
ENSPCOG00000021060	PRDM4	99	96.370	ENSAMEG00000016174	PRDM4	99	96.370	Ailuropoda_melanoleuca
ENSPCOG00000021060	PRDM4	99	86.466	ENSAPLG00000009846	PRDM4	99	85.965	Anas_platyrhynchos
ENSPCOG00000021060	PRDM4	100	96.629	ENSANAG00000024800	PRDM4	100	96.629	Aotus_nancymaae
ENSPCOG00000021060	PRDM4	100	95.880	ENSBTAG00000012999	PRDM4	100	95.880	Bos_taurus
ENSPCOG00000021060	PRDM4	100	96.255	ENSCJAG00000015261	PRDM4	100	96.255	Callithrix_jacchus
ENSPCOG00000021060	PRDM4	100	96.255	ENSCAFG00000001788	PRDM4	100	96.255	Canis_familiaris
ENSPCOG00000021060	PRDM4	100	96.255	ENSCAFG00020004916	PRDM4	100	96.255	Canis_lupus_dingo
ENSPCOG00000021060	PRDM4	100	95.755	ENSCHIG00000019409	PRDM4	100	95.755	Capra_hircus
ENSPCOG00000021060	PRDM4	100	97.004	ENSTSYG00000009248	PRDM4	100	97.004	Carlito_syrichta
ENSPCOG00000021060	PRDM4	99	89.111	ENSCAPG00000013937	PRDM4	99	89.111	Cavia_aperea
ENSPCOG00000021060	PRDM4	99	88.571	ENSCPOG00000022385	PRDM4	100	88.571	Cavia_porcellus
ENSPCOG00000021060	PRDM4	100	96.879	ENSCCAG00000036033	PRDM4	100	96.879	Cebus_capucinus
ENSPCOG00000021060	PRDM4	100	96.504	ENSCATG00000044797	PRDM4	100	96.504	Cercocebus_atys
ENSPCOG00000021060	PRDM4	99	90.920	ENSCLAG00000007545	PRDM4	100	91.294	Chinchilla_lanigera
ENSPCOG00000021060	PRDM4	100	96.754	ENSCSAG00000002896	PRDM4	100	96.754	Chlorocebus_sabaeus
ENSPCOG00000021060	PRDM4	76	98.182	ENSCHOG00000001744	PRDM4	86	98.182	Choloepus_hoffmanni
ENSPCOG00000021060	PRDM4	99	87.453	ENSCPBG00000023187	PRDM4	100	86.951	Chrysemys_picta_bellii
ENSPCOG00000021060	PRDM4	100	96.629	ENSCANG00000021804	PRDM4	100	96.629	Colobus_angolensis_palliatus
ENSPCOG00000021060	PRDM4	99	91.791	ENSCGRG00001015102	-	100	91.542	Cricetulus_griseus_chok1gshd
ENSPCOG00000021060	PRDM4	96	91.742	ENSCGRG00000004044	-	100	91.484	Cricetulus_griseus_crigri
ENSPCOG00000021060	PRDM4	100	95.256	ENSDNOG00000032478	PRDM4	100	95.256	Dasypus_novemcinctus
ENSPCOG00000021060	PRDM4	99	80.678	ENSDORG00000015081	-	100	80.928	Dipodomys_ordii
ENSPCOG00000021060	PRDM4	93	45.927	ENSEBUG00000003775	prdm4	99	46.260	Eptatretus_burgeri
ENSPCOG00000021060	PRDM4	100	96.255	ENSECAG00000015423	PRDM4	100	96.255	Equus_caballus
ENSPCOG00000021060	PRDM4	94	92.144	ENSEEUG00000006569	PRDM4	99	91.877	Erinaceus_europaeus
ENSPCOG00000021060	PRDM4	99	60.389	ENSELUG00000015265	prdm4	99	60.632	Esox_lucius
ENSPCOG00000021060	PRDM4	100	96.754	ENSFCAG00000022478	PRDM4	100	96.754	Felis_catus
ENSPCOG00000021060	PRDM4	99	86.951	ENSFALG00000013342	PRDM4	100	86.575	Ficedula_albicollis
ENSPCOG00000021060	PRDM4	100	86.052	ENSGALG00000012619	PRDM4	100	85.554	Gallus_gallus
ENSPCOG00000021060	PRDM4	99	86.591	ENSGAGG00000002763	PRDM4	95	86.591	Gopherus_agassizii
ENSPCOG00000021060	PRDM4	99	96.750	ENSGGOG00000001244	PRDM4	99	96.750	Gorilla_gorilla
ENSPCOG00000021060	PRDM4	99	92.848	ENSHGLG00000004590	PRDM4	98	92.472	Heterocephalus_glaber_female
ENSPCOG00000021060	PRDM4	99	91.801	ENSHGLG00100007464	PRDM4	100	91.429	Heterocephalus_glaber_male
ENSPCOG00000021060	PRDM4	95	60.622	ENSIPUG00000024162	prdm4	93	60.966	Ictalurus_punctatus
ENSPCOG00000021060	PRDM4	100	96.005	ENSSTOG00000016168	PRDM4	100	96.005	Ictidomys_tridecemlineatus
ENSPCOG00000021060	PRDM4	82	93.011	ENSJJAG00000022448	-	95	93.011	Jaculus_jaculus
ENSPCOG00000021060	PRDM4	99	71.040	ENSLACG00000007452	PRDM4	99	71.782	Latimeria_chalumnae
ENSPCOG00000021060	PRDM4	78	41.425	ENSLOCG00000017092	prdm4	100	51.515	Lepisosteus_oculatus
ENSPCOG00000021060	PRDM4	98	95.558	ENSLAFG00000001483	PRDM4	100	95.558	Loxodonta_africana
ENSPCOG00000021060	PRDM4	100	96.879	ENSMFAG00000041862	PRDM4	100	96.879	Macaca_fascicularis
ENSPCOG00000021060	PRDM4	100	96.879	ENSMMUG00000015550	PRDM4	100	96.879	Macaca_mulatta
ENSPCOG00000021060	PRDM4	100	96.629	ENSMNEG00000032319	PRDM4	100	96.629	Macaca_nemestrina
ENSPCOG00000021060	PRDM4	100	96.754	ENSMLEG00000039607	PRDM4	100	96.754	Mandrillus_leucophaeus
ENSPCOG00000021060	PRDM4	99	78.625	ENSMGAG00000012815	PRDM4	100	78.125	Meleagris_gallopavo
ENSPCOG00000021060	PRDM4	100	99.251	ENSMICG00000007807	PRDM4	100	99.251	Microcebus_murinus
ENSPCOG00000021060	PRDM4	99	92.982	ENSMOCG00000000753	Prdm4	99	92.732	Microtus_ochrogaster
ENSPCOG00000021060	PRDM4	99	93.601	ENSMUSG00000035529	Prdm4	100	93.350	Mus_musculus
ENSPCOG00000021060	PRDM4	99	92.974	MGP_PahariEiJ_G0031398	Prdm4	100	93.011	Mus_pahari
ENSPCOG00000021060	PRDM4	99	94.354	MGP_SPRETEiJ_G0016505	Prdm4	100	94.409	Mus_spretus
ENSPCOG00000021060	PRDM4	99	90.150	ENSMPUG00000012238	PRDM4	99	89.401	Mustela_putorius_furo
ENSPCOG00000021060	PRDM4	99	96.617	ENSMLUG00000000767	PRDM4	99	96.617	Myotis_lucifugus
ENSPCOG00000021060	PRDM4	99	94.605	ENSNGAG00000018627	Prdm4	100	94.605	Nannospalax_galili
ENSPCOG00000021060	PRDM4	100	96.754	ENSNLEG00000006748	PRDM4	100	96.754	Nomascus_leucogenys
ENSPCOG00000021060	PRDM4	89	87.197	ENSMEUG00000004495	PRDM4	89	87.197	Notamacropus_eugenii
ENSPCOG00000021060	PRDM4	88	94.070	ENSOPRG00000010192	PRDM4	89	94.070	Ochotona_princeps
ENSPCOG00000021060	PRDM4	99	89.125	ENSODEG00000014750	PRDM4	99	89.000	Octodon_degus
ENSPCOG00000021060	PRDM4	100	89.763	ENSOANG00000005526	PRDM4	100	89.763	Ornithorhynchus_anatinus
ENSPCOG00000021060	PRDM4	93	95.565	ENSOCUG00000012859	PRDM4	96	95.565	Oryctolagus_cuniculus
ENSPCOG00000021060	PRDM4	99	97.365	ENSOGAG00000011945	PRDM4	100	97.365	Otolemur_garnettii
ENSPCOG00000021060	PRDM4	100	95.506	ENSOARG00000017955	PRDM4	100	95.506	Ovis_aries
ENSPCOG00000021060	PRDM4	100	96.879	ENSPPAG00000038438	PRDM4	100	96.879	Pan_paniscus
ENSPCOG00000021060	PRDM4	100	96.754	ENSPPRG00000004144	PRDM4	100	96.754	Panthera_pardus
ENSPCOG00000021060	PRDM4	100	96.754	ENSPTIG00000005847	PRDM4	100	96.754	Panthera_tigris_altaica
ENSPCOG00000021060	PRDM4	100	96.879	ENSPTRG00000005400	PRDM4	100	96.879	Pan_troglodytes
ENSPCOG00000021060	PRDM4	100	96.879	ENSPANG00000022084	PRDM4	100	96.879	Papio_anubis
ENSPCOG00000021060	PRDM4	99	59.334	ENSPKIG00000000875	prdm4	99	60.166	Paramormyrops_kingsleyae
ENSPCOG00000021060	PRDM4	91	80.882	ENSPSIG00000012066	PRDM4	100	80.882	Pelodiscus_sinensis
ENSPCOG00000021060	PRDM4	99	94.228	ENSPEMG00000014598	Prdm4	100	94.228	Peromyscus_maniculatus_bairdii
ENSPCOG00000021060	PRDM4	100	87.313	ENSPCIG00000009471	PRDM4	100	87.313	Phascolarctos_cinereus
ENSPCOG00000021060	PRDM4	100	96.754	ENSPPYG00000004913	PRDM4	100	96.754	Pongo_abelii
ENSPCOG00000021060	PRDM4	83	95.833	ENSPCAG00000009987	PRDM4	83	95.833	Procavia_capensis
ENSPCOG00000021060	PRDM4	100	95.137	ENSPVAG00000001596	PRDM4	100	95.387	Pteropus_vampyrus
ENSPCOG00000021060	PRDM4	99	93.108	ENSRNOG00000004962	Prdm4	100	92.732	Rattus_norvegicus
ENSPCOG00000021060	PRDM4	100	96.629	ENSRBIG00000035488	PRDM4	100	96.629	Rhinopithecus_bieti
ENSPCOG00000021060	PRDM4	100	96.754	ENSRROG00000012779	PRDM4	100	96.754	Rhinopithecus_roxellana
ENSPCOG00000021060	PRDM4	100	96.754	ENSSBOG00000000403	PRDM4	100	96.754	Saimiri_boliviensis_boliviensis
ENSPCOG00000021060	PRDM4	99	63.547	ENSSFOG00015023358	prdm4	99	63.547	Scleropages_formosus
ENSPCOG00000021060	PRDM4	100	96.005	ENSSSCG00000000160	PRDM4	100	96.005	Sus_scrofa
ENSPCOG00000021060	PRDM4	99	86.717	ENSTGUG00000010962	-	99	86.341	Taeniopygia_guttata
ENSPCOG00000021060	PRDM4	80	88.567	ENSTBEG00000001732	PRDM4	84	88.567	Tupaia_belangeri
ENSPCOG00000021060	PRDM4	100	95.381	ENSTTRG00000011056	PRDM4	100	95.381	Tursiops_truncatus
ENSPCOG00000021060	PRDM4	100	96.629	ENSUAMG00000022796	PRDM4	100	96.629	Ursus_americanus
ENSPCOG00000021060	PRDM4	100	96.629	ENSUMAG00000017231	PRDM4	100	96.629	Ursus_maritimus
ENSPCOG00000021060	PRDM4	99	96.487	ENSVPAG00000002215	PRDM4	100	96.487	Vicugna_pacos
ENSPCOG00000021060	PRDM4	100	96.255	ENSVVUG00000023397	PRDM4	100	96.255	Vulpes_vulpes