EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPCOG00000023813 (Gene tree)
Gene ID: 105818136
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Propithecus_coquereli
Status: putative
Strand: Minus strand
Length: 33077 bases
Position: chrKQ024158.1:695277-728353
Accession: 105818136
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPCOP00000023366	UPF1_Zn_bind	PF09416.10	7.6e-75	1	1
ENSPCOP00000023360	UPF1_Zn_bind	PF09416.10	7.7e-75	1	1
ENSPCOP00000023366	ResIII	PF04851.15	2.7e-05	1	1
ENSPCOP00000023360	ResIII	PF04851.15	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPCOT00000034038	UPF1-201	3764	XM_012654024	ENSPCOP00000023360	1129 (aa)	XP_012509478	A0A2K6GAT9
ENSPCOT00000034044	UPF1-202	3372	-	ENSPCOP00000023366	1123 (aa)	-	A0A2K6GAW6

Gene Model

Click here to download ENSPCOG00000023813's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPCOG00000023813's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPCOG00000023813	UPF1	100	99.469	ENSG00000005007	UPF1	100	99.469	Homo_sapiens
ENSPCOG00000023813	UPF1	100	92.185	ENSAPOG00000010916	-	100	92.185	Acanthochromis_polyacanthus
ENSPCOG00000023813	UPF1	100	90.965	ENSAPOG00000023773	upf1	100	91.054	Acanthochromis_polyacanthus
ENSPCOG00000023813	UPF1	100	98.492	ENSAMEG00000011474	UPF1	100	98.492	Ailuropoda_melanoleuca
ENSPCOG00000023813	UPF1	92	93.919	ENSACIG00000010985	-	100	94.015	Amphilophus_citrinellus
ENSPCOG00000023813	UPF1	100	90.796	ENSACIG00000019949	upf1	100	91.143	Amphilophus_citrinellus
ENSPCOG00000023813	UPF1	100	90.480	ENSAOCG00000018519	upf1	100	91.053	Amphiprion_ocellaris
ENSPCOG00000023813	UPF1	100	92.185	ENSAOCG00000006352	-	100	92.185	Amphiprion_ocellaris
ENSPCOG00000023813	UPF1	100	92.185	ENSAPEG00000006292	-	100	92.185	Amphiprion_percula
ENSPCOG00000023813	UPF1	100	90.480	ENSAPEG00000016344	upf1	100	91.053	Amphiprion_percula
ENSPCOG00000023813	UPF1	100	89.667	ENSATEG00000017867	upf1	100	90.455	Anabas_testudineus
ENSPCOG00000023813	UPF1	100	92.274	ENSATEG00000016606	-	100	92.274	Anabas_testudineus
ENSPCOG00000023813	UPF1	94	98.287	ENSAPLG00000009175	UPF1	99	98.287	Anas_platyrhynchos
ENSPCOG00000023813	UPF1	95	96.930	ENSANAG00000024107	UPF1	97	96.930	Aotus_nancymaae
ENSPCOG00000023813	UPF1	100	92.089	ENSACLG00000022630	-	100	92.000	Astatotilapia_calliptera
ENSPCOG00000023813	UPF1	100	90.531	ENSACLG00000007181	upf1	100	90.877	Astatotilapia_calliptera
ENSPCOG00000023813	UPF1	100	92.806	ENSAMXG00000042187	upf1	100	93.250	Astyanax_mexicanus
ENSPCOG00000023813	UPF1	100	99.204	ENSBTAG00000020922	UPF1	100	99.204	Bos_taurus
ENSPCOG00000023813	UPF1	89	50.740	WBGene00004880	smg-2	99	47.857	Caenorhabditis_elegans
ENSPCOG00000023813	UPF1	100	99.469	ENSCJAG00000019627	UPF1	100	99.469	Callithrix_jacchus
ENSPCOG00000023813	UPF1	100	99.558	ENSCAFG00000014578	UPF1	100	99.558	Canis_familiaris
ENSPCOG00000023813	UPF1	100	98.584	ENSCAFG00020012347	UPF1	100	98.584	Canis_lupus_dingo
ENSPCOG00000023813	UPF1	100	98.760	ENSCHIG00000011018	UPF1	100	98.760	Capra_hircus
ENSPCOG00000023813	UPF1	96	98.327	ENSTSYG00000008877	UPF1	99	98.327	Carlito_syrichta
ENSPCOG00000023813	UPF1	94	98.669	ENSCAPG00000005758	UPF1	95	98.669	Cavia_aperea
ENSPCOG00000023813	UPF1	100	96.800	ENSCPOG00000025463	UPF1	100	96.800	Cavia_porcellus
ENSPCOG00000023813	UPF1	100	99.288	ENSCCAG00000032175	UPF1	100	99.288	Cebus_capucinus
ENSPCOG00000023813	UPF1	96	97.230	ENSCATG00000040306	UPF1	98	99.714	Cercocebus_atys
ENSPCOG00000023813	UPF1	96	98.327	ENSCLAG00000004037	UPF1	100	99.715	Chinchilla_lanigera
ENSPCOG00000023813	UPF1	100	98.406	ENSCSAG00000005276	UPF1	100	98.406	Chlorocebus_sabaeus
ENSPCOG00000023813	UPF1	100	96.539	ENSCPBG00000012513	UPF1	100	96.539	Chrysemys_picta_bellii
ENSPCOG00000023813	UPF1	78	77.904	ENSCING00000021399	-	99	77.790	Ciona_intestinalis
ENSPCOG00000023813	UPF1	99	71.743	ENSCSAVG00000006533	-	99	71.655	Ciona_savignyi
ENSPCOG00000023813	UPF1	96	98.417	ENSCANG00000029819	UPF1	99	98.692	Colobus_angolensis_palliatus
ENSPCOG00000023813	UPF1	100	97.954	ENSCGRG00001021067	Upf1	100	97.954	Cricetulus_griseus_chok1gshd
ENSPCOG00000023813	UPF1	95	98.499	ENSCGRG00000013480	Upf1	99	98.499	Cricetulus_griseus_crigri
ENSPCOG00000023813	UPF1	100	92.178	ENSCSEG00000016159	-	100	92.089	Cynoglossus_semilaevis
ENSPCOG00000023813	UPF1	100	85.968	ENSCSEG00000017239	upf1	100	86.057	Cynoglossus_semilaevis
ENSPCOG00000023813	UPF1	100	91.918	ENSCVAG00000010561	upf1	100	91.829	Cyprinodon_variegatus
ENSPCOG00000023813	UPF1	100	92.629	ENSDARG00000016302	upf1	100	93.073	Danio_rerio
ENSPCOG00000023813	UPF1	95	95.701	ENSDORG00000009984	Upf1	96	95.701	Dipodomys_ordii
ENSPCOG00000023813	UPF1	85	70.576	FBgn0030354	Upf1	84	67.112	Drosophila_melanogaster
ENSPCOG00000023813	UPF1	55	85.048	ENSEBUG00000010069	upf1	96	85.048	Eptatretus_burgeri
ENSPCOG00000023813	UPF1	100	98.496	ENSEASG00005006549	UPF1	100	98.496	Equus_asinus_asinus
ENSPCOG00000023813	UPF1	100	98.496	ENSECAG00000010639	UPF1	100	98.496	Equus_caballus
ENSPCOG00000023813	UPF1	100	90.186	ENSELUG00000020917	upf1	100	90.451	Esox_lucius
ENSPCOG00000023813	UPF1	100	91.431	ENSELUG00000012916	-	100	91.350	Esox_lucius
ENSPCOG00000023813	UPF1	100	99.469	ENSFCAG00000009757	UPF1	100	99.469	Felis_catus
ENSPCOG00000023813	UPF1	96	95.849	ENSFALG00000009312	UPF1	99	95.849	Ficedula_albicollis
ENSPCOG00000023813	UPF1	97	97.516	ENSFDAG00000014816	UPF1	100	99.620	Fukomys_damarensis
ENSPCOG00000023813	UPF1	100	88.018	ENSFHEG00000006428	upf1	100	88.018	Fundulus_heteroclitus
ENSPCOG00000023813	UPF1	85	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSPCOG00000023813	UPF1	100	91.829	ENSGMOG00000007541	upf1	100	92.274	Gadus_morhua
ENSPCOG00000023813	UPF1	100	96.726	ENSGALG00000003220	UPF1	100	96.726	Gallus_gallus
ENSPCOG00000023813	UPF1	63	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSPCOG00000023813	UPF1	100	91.733	ENSGAFG00000004831	upf1	100	91.644	Gambusia_affinis
ENSPCOG00000023813	UPF1	100	96.886	ENSGAGG00000022217	UPF1	100	96.886	Gopherus_agassizii
ENSPCOG00000023813	UPF1	94	98.670	ENSGGOG00000002608	UPF1	99	98.670	Gorilla_gorilla
ENSPCOG00000023813	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPCOG00000023813	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSPCOG00000023813	UPF1	100	98.937	ENSHGLG00000010900	UPF1	100	98.937	Heterocephalus_glaber_female
ENSPCOG00000023813	UPF1	96	96.093	ENSHGLG00100005904	UPF1	99	96.093	Heterocephalus_glaber_male
ENSPCOG00000023813	UPF1	100	91.289	ENSHCOG00000008918	upf1	100	93.014	Hippocampus_comes
ENSPCOG00000023813	UPF1	100	93.250	ENSIPUG00000005108	UPF1	100	93.606	Ictalurus_punctatus
ENSPCOG00000023813	UPF1	100	99.199	ENSSTOG00000009196	UPF1	100	99.199	Ictidomys_tridecemlineatus
ENSPCOG00000023813	UPF1	100	98.753	ENSJJAG00000023151	Upf1	100	98.753	Jaculus_jaculus
ENSPCOG00000023813	UPF1	100	92.185	ENSKMAG00000004962	upf1	100	92.096	Kryptolebias_marmoratus
ENSPCOG00000023813	UPF1	100	89.035	ENSLBEG00000014862	upf1	100	90.175	Labrus_bergylta
ENSPCOG00000023813	UPF1	100	92.096	ENSLBEG00000027848	-	100	92.096	Labrus_bergylta
ENSPCOG00000023813	UPF1	62	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSPCOG00000023813	UPF1	100	94.578	ENSLOCG00000002072	upf1	100	94.578	Lepisosteus_oculatus
ENSPCOG00000023813	UPF1	100	98.673	ENSLAFG00000014963	UPF1	100	98.673	Loxodonta_africana
ENSPCOG00000023813	UPF1	100	99.469	ENSMFAG00000037748	UPF1	100	99.469	Macaca_fascicularis
ENSPCOG00000023813	UPF1	100	99.469	ENSMMUG00000023286	UPF1	100	99.469	Macaca_mulatta
ENSPCOG00000023813	UPF1	100	99.469	ENSMNEG00000000046	UPF1	100	99.469	Macaca_nemestrina
ENSPCOG00000023813	UPF1	94	99.715	ENSMLEG00000028404	UPF1	100	99.715	Mandrillus_leucophaeus
ENSPCOG00000023813	UPF1	100	89.405	ENSMAMG00000006229	upf1	100	90.455	Mastacembelus_armatus
ENSPCOG00000023813	UPF1	100	91.474	ENSMAMG00000006231	-	100	91.918	Mastacembelus_armatus
ENSPCOG00000023813	UPF1	100	92.089	ENSMZEG00005016386	-	100	92.000	Maylandia_zebra
ENSPCOG00000023813	UPF1	100	89.501	ENSMZEG00005003489	upf1	100	90.677	Maylandia_zebra
ENSPCOG00000023813	UPF1	94	97.814	ENSMGAG00000004745	UPF1	100	97.814	Meleagris_gallopavo
ENSPCOG00000023813	UPF1	95	97.588	ENSMAUG00000011398	Upf1	97	97.588	Mesocricetus_auratus
ENSPCOG00000023813	UPF1	100	98.583	ENSMICG00000001659	UPF1	100	98.583	Microcebus_murinus
ENSPCOG00000023813	UPF1	100	98.932	ENSMOCG00000005699	Upf1	100	98.932	Microtus_ochrogaster
ENSPCOG00000023813	UPF1	94	91.643	ENSMMOG00000007537	-	99	91.738	Mola_mola
ENSPCOG00000023813	UPF1	100	90.214	ENSMMOG00000007881	upf1	100	90.667	Mola_mola
ENSPCOG00000023813	UPF1	100	97.970	ENSMODG00000003689	UPF1	100	97.970	Monodelphis_domestica
ENSPCOG00000023813	UPF1	100	90.981	ENSMALG00000018100	-	100	90.981	Monopterus_albus
ENSPCOG00000023813	UPF1	100	90.480	ENSMALG00000000144	upf1	100	90.747	Monopterus_albus
ENSPCOG00000023813	UPF1	100	98.843	MGP_CAROLIEiJ_G0031142	Upf1	100	98.843	Mus_caroli
ENSPCOG00000023813	UPF1	100	98.843	ENSMUSG00000058301	Upf1	100	98.843	Mus_musculus
ENSPCOG00000023813	UPF1	100	98.843	MGP_PahariEiJ_G0021607	Upf1	100	98.843	Mus_pahari
ENSPCOG00000023813	UPF1	100	98.843	MGP_SPRETEiJ_G0032260	Upf1	100	98.843	Mus_spretus
ENSPCOG00000023813	UPF1	100	98.584	ENSMPUG00000015516	UPF1	100	98.584	Mustela_putorius_furo
ENSPCOG00000023813	UPF1	99	98.135	ENSMLUG00000012122	UPF1	99	98.135	Myotis_lucifugus
ENSPCOG00000023813	UPF1	100	98.671	ENSNGAG00000024107	Upf1	100	98.671	Nannospalax_galili
ENSPCOG00000023813	UPF1	100	89.792	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSPCOG00000023813	UPF1	100	88.850	ENSNBRG00000000670	upf1	100	89.194	Neolamprologus_brichardi
ENSPCOG00000023813	UPF1	94	93.916	ENSNLEG00000006062	UPF1	100	93.916	Nomascus_leucogenys
ENSPCOG00000023813	UPF1	83	94.314	ENSMEUG00000014146	-	83	94.314	Notamacropus_eugenii
ENSPCOG00000023813	UPF1	94	90.875	ENSOPRG00000014018	UPF1	100	90.875	Ochotona_princeps
ENSPCOG00000023813	UPF1	100	98.219	ENSODEG00000012426	UPF1	100	98.219	Octodon_degus
ENSPCOG00000023813	UPF1	100	89.764	ENSONIG00000010452	upf1	100	90.941	Oreochromis_niloticus
ENSPCOG00000023813	UPF1	100	92.178	ENSONIG00000012729	-	100	92.089	Oreochromis_niloticus
ENSPCOG00000023813	UPF1	100	97.606	ENSOANG00000004568	UPF1	100	97.606	Ornithorhynchus_anatinus
ENSPCOG00000023813	UPF1	100	92.096	ENSORLG00000008453	upf1	100	92.007	Oryzias_latipes
ENSPCOG00000023813	UPF1	100	91.925	ENSORLG00020014758	upf1	100	91.837	Oryzias_latipes_hni
ENSPCOG00000023813	UPF1	100	91.925	ENSORLG00015010165	upf1	100	91.837	Oryzias_latipes_hsok
ENSPCOG00000023813	UPF1	100	92.185	ENSOMEG00000003665	upf1	100	92.096	Oryzias_melastigma
ENSPCOG00000023813	UPF1	100	98.583	ENSOGAG00000012866	UPF1	100	98.583	Otolemur_garnettii
ENSPCOG00000023813	UPF1	96	97.332	ENSOARG00000010739	UPF1	100	97.332	Ovis_aries
ENSPCOG00000023813	UPF1	96	98.417	ENSPPAG00000043884	UPF1	98	98.417	Pan_paniscus
ENSPCOG00000023813	UPF1	100	99.469	ENSPPRG00000023470	UPF1	100	99.469	Panthera_pardus
ENSPCOG00000023813	UPF1	94	96.670	ENSPTIG00000010159	UPF1	99	96.670	Panthera_tigris_altaica
ENSPCOG00000023813	UPF1	100	99.469	ENSPTRG00000010721	UPF1	100	99.469	Pan_troglodytes
ENSPCOG00000023813	UPF1	100	99.469	ENSPANG00000008847	UPF1	100	99.469	Papio_anubis
ENSPCOG00000023813	UPF1	91	94.558	ENSPKIG00000006069	upf1	97	94.461	Paramormyrops_kingsleyae
ENSPCOG00000023813	UPF1	68	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSPCOG00000023813	UPF1	100	88.840	ENSPMGG00000017327	upf1	100	88.948	Periophthalmus_magnuspinnatus
ENSPCOG00000023813	UPF1	100	98.932	ENSPEMG00000001085	Upf1	100	98.932	Peromyscus_maniculatus_bairdii
ENSPCOG00000023813	UPF1	100	87.211	ENSPMAG00000001206	upf1	100	86.714	Petromyzon_marinus
ENSPCOG00000023813	UPF1	100	97.522	ENSPCIG00000006156	UPF1	100	97.522	Phascolarctos_cinereus
ENSPCOG00000023813	UPF1	100	88.987	ENSPLAG00000018155	-	100	88.899	Poecilia_latipinna
ENSPCOG00000023813	UPF1	100	91.822	ENSPLAG00000016232	-	100	91.733	Poecilia_latipinna
ENSPCOG00000023813	UPF1	100	89.530	ENSPMEG00000011443	-	100	89.441	Poecilia_mexicana
ENSPCOG00000023813	UPF1	100	91.911	ENSPMEG00000016319	-	100	91.822	Poecilia_mexicana
ENSPCOG00000023813	UPF1	100	89.279	ENSPREG00000009940	upf1	100	89.279	Poecilia_reticulata
ENSPCOG00000023813	UPF1	100	91.644	ENSPREG00000011247	-	100	91.556	Poecilia_reticulata
ENSPCOG00000023813	UPF1	100	94.508	ENSPPYG00000009752	UPF1	100	94.508	Pongo_abelii
ENSPCOG00000023813	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSPCOG00000023813	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPCOG00000023813	UPF1	100	92.089	ENSPNYG00000016731	-	100	92.000	Pundamilia_nyererei
ENSPCOG00000023813	UPF1	100	89.501	ENSPNYG00000003694	upf1	100	90.677	Pundamilia_nyererei
ENSPCOG00000023813	UPF1	100	92.806	ENSPNAG00000025614	upf1	100	93.250	Pygocentrus_nattereri
ENSPCOG00000023813	UPF1	100	98.843	ENSRNOG00000020134	Upf1	100	98.843	Rattus_norvegicus
ENSPCOG00000023813	UPF1	95	96.355	ENSRBIG00000013894	UPF1	98	98.377	Rhinopithecus_bieti
ENSPCOG00000023813	UPF1	95	98.692	ENSRROG00000040935	UPF1	99	98.692	Rhinopithecus_roxellana
ENSPCOG00000023813	UPF1	77	54.639	YMR080C	NAM7	86	55.322	Saccharomyces_cerevisiae
ENSPCOG00000023813	UPF1	97	96.978	ENSSBOG00000023632	UPF1	98	98.047	Saimiri_boliviensis_boliviensis
ENSPCOG00000023813	UPF1	94	98.955	ENSSHAG00000010499	UPF1	100	98.955	Sarcophilus_harrisii
ENSPCOG00000023813	UPF1	100	94.667	ENSSFOG00015021095	upf1	99	96.293	Scleropages_formosus
ENSPCOG00000023813	UPF1	100	88.684	ENSSMAG00000005055	upf1	100	89.483	Scophthalmus_maximus
ENSPCOG00000023813	UPF1	100	92.185	ENSSMAG00000021018	-	100	92.185	Scophthalmus_maximus
ENSPCOG00000023813	UPF1	100	89.667	ENSSDUG00000013320	upf1	100	90.543	Seriola_dumerili
ENSPCOG00000023813	UPF1	100	92.451	ENSSDUG00000009629	-	100	92.451	Seriola_dumerili
ENSPCOG00000023813	UPF1	100	90.459	ENSSLDG00000020868	upf1	100	90.829	Seriola_lalandi_dorsalis
ENSPCOG00000023813	UPF1	100	92.451	ENSSLDG00000006878	-	100	92.451	Seriola_lalandi_dorsalis
ENSPCOG00000023813	UPF1	100	96.708	ENSSPUG00000010538	UPF1	100	96.708	Sphenodon_punctatus
ENSPCOG00000023813	UPF1	100	92.267	ENSSPAG00000011521	-	100	92.178	Stegastes_partitus
ENSPCOG00000023813	UPF1	100	88.978	ENSSPAG00000000003	upf1	100	88.918	Stegastes_partitus
ENSPCOG00000023813	UPF1	100	99.115	ENSSSCG00000039301	UPF1	100	99.115	Sus_scrofa
ENSPCOG00000023813	UPF1	83	90.319	ENSTGUG00000001057	UPF1	100	95.569	Taeniopygia_guttata
ENSPCOG00000023813	UPF1	100	91.200	ENSTRUG00000005131	-	100	91.200	Takifugu_rubripes
ENSPCOG00000023813	UPF1	100	90.125	ENSTRUG00000000150	upf1	100	90.125	Takifugu_rubripes
ENSPCOG00000023813	UPF1	100	94.248	ENSTTRG00000011544	UPF1	100	94.144	Tursiops_truncatus
ENSPCOG00000023813	UPF1	100	98.496	ENSUAMG00000007093	UPF1	100	98.496	Ursus_americanus
ENSPCOG00000023813	UPF1	96	98.054	ENSUMAG00000006652	UPF1	99	98.877	Ursus_maritimus
ENSPCOG00000023813	UPF1	100	98.584	ENSVVUG00000007797	UPF1	100	98.584	Vulpes_vulpes
ENSPCOG00000023813	UPF1	100	82.467	ENSXETG00000013602	upf1	100	82.467	Xenopus_tropicalis
ENSPCOG00000023813	UPF1	93	93.762	ENSXCOG00000005764	-	100	93.762	Xiphophorus_couchianus
ENSPCOG00000023813	UPF1	97	89.338	ENSXCOG00000015275	-	96	89.246	Xiphophorus_couchianus
ENSPCOG00000023813	UPF1	100	89.600	ENSXMAG00000001703	-	100	89.511	Xiphophorus_maculatus
ENSPCOG00000023813	UPF1	100	91.733	ENSXMAG00000002540	-	100	91.644	Xiphophorus_maculatus