EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000000171 (Gene tree)
Gene ID: 102923749
Gene Symbol: Pabpc5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 1978 bases
Position: chrKI615781.1:1210113-1212090
Accession: 102923749
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000000227	RRM_5	PF13893.6	2.6e-10	1	1
ENSPEMP00000000227	RRM_1	PF00076.22	6e-78	1	4
ENSPEMP00000000227	RRM_1	PF00076.22	6e-78	2	4
ENSPEMP00000000227	RRM_1	PF00076.22	6e-78	3	4
ENSPEMP00000000227	RRM_1	PF00076.22	6e-78	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000000228	-	1441	XM_006990484	ENSPEMP00000000227	382 (aa)	XP_006990546	UPI00042AACEE

Gene Model

Click here to download ENSPEMG00000000171's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000000171's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000000171	Pabpc5	63	33.333	ENSPEMG00000013842	Celf6	52	33.333
ENSPEMG00000000171	Pabpc5	95	63.636	ENSPEMG00000024193	-	57	63.764
ENSPEMG00000000171	Pabpc5	95	65.014	ENSPEMG00000014998	Pabpc1	58	65.169
ENSPEMG00000000171	Pabpc5	95	56.931	ENSPEMG00000017399	-	95	58.333
ENSPEMG00000000171	Pabpc5	95	66.391	ENSPEMG00000023569	-	58	66.573
ENSPEMG00000000171	Pabpc5	53	38.667	ENSPEMG00000006286	-	59	38.667
ENSPEMG00000000171	Pabpc5	94	35.802	ENSPEMG00000014101	Elavl2	86	35.802
ENSPEMG00000000171	Pabpc5	95	57.939	ENSPEMG00000020671	Pabpc1l	63	57.865
ENSPEMG00000000171	Pabpc5	95	56.931	ENSPEMG00000014159	-	95	58.333
ENSPEMG00000000171	Pabpc5	94	30.769	ENSPEMG00000022021	Elavl1	96	30.769
ENSPEMG00000000171	Pabpc5	96	61.983	ENSPEMG00000011901	Pabpc6	61	62.079
ENSPEMG00000000171	Pabpc5	96	30.508	ENSPEMG00000007877	Trnau1ap	62	30.409
ENSPEMG00000000171	Pabpc5	95	58.516	ENSPEMG00000012565	Pabpc4l	96	58.427
ENSPEMG00000000171	Pabpc5	65	40.000	ENSPEMG00000001184	Celf3	59	35.616
ENSPEMG00000000171	Pabpc5	95	61.111	ENSPEMG00000013149	Pabpc2	59	60.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000000171	Pabpc5	99	95.013	ENSG00000174740	PABPC5	99	95.013	Homo_sapiens
ENSPEMG00000000171	Pabpc5	99	94.488	ENSAMEG00000020114	PABPC5	100	94.488	Ailuropoda_melanoleuca
ENSPEMG00000000171	Pabpc5	99	95.013	ENSANAG00000005063	PABPC5	99	95.013	Aotus_nancymaae
ENSPEMG00000000171	Pabpc5	100	94.241	ENSBTAG00000019942	PABPC5	100	94.241	Bos_taurus
ENSPEMG00000000171	Pabpc5	99	94.488	ENSCJAG00000003665	PABPC5	99	94.488	Callithrix_jacchus
ENSPEMG00000000171	Pabpc5	100	93.979	ENSCAFG00000017452	PABPC5	100	93.979	Canis_familiaris
ENSPEMG00000000171	Pabpc5	100	93.979	ENSCHIG00000019004	PABPC5	100	93.979	Capra_hircus
ENSPEMG00000000171	Pabpc5	100	94.764	ENSTSYG00000036351	PABPC5	100	94.764	Carlito_syrichta
ENSPEMG00000000171	Pabpc5	99	85.864	ENSCAPG00000010714	PABPC5	100	85.864	Cavia_aperea
ENSPEMG00000000171	Pabpc5	100	92.147	ENSCPOG00000002555	PABPC5	100	92.147	Cavia_porcellus
ENSPEMG00000000171	Pabpc5	99	95.013	ENSCCAG00000032154	PABPC5	99	95.013	Cebus_capucinus
ENSPEMG00000000171	Pabpc5	99	95.276	ENSCATG00000043083	PABPC5	99	95.276	Cercocebus_atys
ENSPEMG00000000171	Pabpc5	100	93.455	ENSCLAG00000000647	PABPC5	100	93.455	Chinchilla_lanigera
ENSPEMG00000000171	Pabpc5	99	95.276	ENSCSAG00000000065	PABPC5	99	95.276	Chlorocebus_sabaeus
ENSPEMG00000000171	Pabpc5	99	95.276	ENSCANG00000011473	PABPC5	99	95.276	Colobus_angolensis_palliatus
ENSPEMG00000000171	Pabpc5	100	93.455	ENSCGRG00000018699	Pabpc5	100	93.455	Cricetulus_griseus_crigri
ENSPEMG00000000171	Pabpc5	100	76.501	ENSETEG00000011832	PABPC5	100	76.501	Echinops_telfairi
ENSPEMG00000000171	Pabpc5	100	94.503	ENSEASG00005014396	PABPC5	100	94.503	Equus_asinus_asinus
ENSPEMG00000000171	Pabpc5	100	94.503	ENSECAG00000003452	PABPC5	100	94.503	Equus_caballus
ENSPEMG00000000171	Pabpc5	100	94.241	ENSFCAG00000004998	PABPC5	100	94.241	Felis_catus
ENSPEMG00000000171	Pabpc5	100	93.455	ENSFDAG00000000126	PABPC5	100	93.455	Fukomys_damarensis
ENSPEMG00000000171	Pabpc5	99	95.013	ENSGGOG00000007622	PABPC5	99	95.013	Gorilla_gorilla
ENSPEMG00000000171	Pabpc5	95	94.495	ENSJJAG00000011960	Pabpc5	100	94.495	Jaculus_jaculus
ENSPEMG00000000171	Pabpc5	99	95.276	ENSMFAG00000024561	PABPC5	99	95.276	Macaca_fascicularis
ENSPEMG00000000171	Pabpc5	99	95.276	ENSMMUG00000011562	PABPC5	99	95.276	Macaca_mulatta
ENSPEMG00000000171	Pabpc5	99	95.276	ENSMNEG00000037604	PABPC5	99	95.276	Macaca_nemestrina
ENSPEMG00000000171	Pabpc5	99	95.276	ENSMLEG00000028318	PABPC5	99	95.276	Mandrillus_leucophaeus
ENSPEMG00000000171	Pabpc5	100	93.979	ENSMICG00000041706	PABPC5	100	93.979	Microcebus_murinus
ENSPEMG00000000171	Pabpc5	100	95.026	ENSMOCG00000001554	Pabpc5	100	95.026	Microtus_ochrogaster
ENSPEMG00000000171	Pabpc5	99	92.632	MGP_CAROLIEiJ_G0033367	Pabpc5	99	92.632	Mus_caroli
ENSPEMG00000000171	Pabpc5	99	93.158	ENSMUSG00000034732	Pabpc5	99	93.158	Mus_musculus
ENSPEMG00000000171	Pabpc5	100	93.455	MGP_PahariEiJ_G0031908	Pabpc5	100	93.455	Mus_pahari
ENSPEMG00000000171	Pabpc5	99	93.158	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.158	Mus_spretus
ENSPEMG00000000171	Pabpc5	100	93.717	ENSMPUG00000018465	PABPC5	100	93.717	Mustela_putorius_furo
ENSPEMG00000000171	Pabpc5	100	94.241	ENSMLUG00000008244	PABPC5	100	94.241	Myotis_lucifugus
ENSPEMG00000000171	Pabpc5	95	93.578	ENSNGAG00000004371	Pabpc5	100	93.578	Nannospalax_galili
ENSPEMG00000000171	Pabpc5	99	95.013	ENSNLEG00000035086	PABPC5	99	95.013	Nomascus_leucogenys
ENSPEMG00000000171	Pabpc5	95	95.928	ENSOPRG00000000856	PABPC5	100	95.928	Ochotona_princeps
ENSPEMG00000000171	Pabpc5	100	94.503	ENSOCUG00000010919	PABPC5	100	94.503	Oryctolagus_cuniculus
ENSPEMG00000000171	Pabpc5	100	94.503	ENSOGAG00000006882	PABPC5	100	94.503	Otolemur_garnettii
ENSPEMG00000000171	Pabpc5	100	94.241	ENSOARG00000010260	PABPC5	100	94.241	Ovis_aries
ENSPEMG00000000171	Pabpc5	99	94.751	ENSPPAG00000007378	PABPC5	99	94.751	Pan_paniscus
ENSPEMG00000000171	Pabpc5	100	94.241	ENSPPRG00000010742	PABPC5	100	94.241	Panthera_pardus
ENSPEMG00000000171	Pabpc5	100	94.241	ENSPTIG00000001480	PABPC5	100	94.241	Panthera_tigris_altaica
ENSPEMG00000000171	Pabpc5	99	95.013	ENSPTRG00000022078	PABPC5	99	95.013	Pan_troglodytes
ENSPEMG00000000171	Pabpc5	99	95.276	ENSPANG00000018282	PABPC5	99	95.276	Papio_anubis
ENSPEMG00000000171	Pabpc5	99	95.013	ENSPPYG00000020526	PABPC5	99	95.013	Pongo_abelii
ENSPEMG00000000171	Pabpc5	98	96.000	ENSPCAG00000015577	PABPC5	100	96.000	Procavia_capensis
ENSPEMG00000000171	Pabpc5	100	94.241	ENSPCOG00000000676	PABPC5	100	94.241	Propithecus_coquereli
ENSPEMG00000000171	Pabpc5	100	95.026	ENSPVAG00000006465	PABPC5	100	95.026	Pteropus_vampyrus
ENSPEMG00000000171	Pabpc5	100	93.717	ENSRNOG00000003354	Pabpc5	100	93.717	Rattus_norvegicus
ENSPEMG00000000171	Pabpc5	99	95.276	ENSRBIG00000011760	PABPC5	99	95.276	Rhinopithecus_bieti
ENSPEMG00000000171	Pabpc5	99	95.276	ENSRROG00000036708	PABPC5	99	95.276	Rhinopithecus_roxellana
ENSPEMG00000000171	Pabpc5	99	94.751	ENSSBOG00000008658	PABPC5	99	94.751	Saimiri_boliviensis_boliviensis
ENSPEMG00000000171	Pabpc5	100	92.408	ENSSARG00000014012	PABPC5	100	92.408	Sorex_araneus
ENSPEMG00000000171	Pabpc5	100	94.503	ENSSSCG00000040194	PABPC5	100	94.503	Sus_scrofa
ENSPEMG00000000171	Pabpc5	100	95.550	ENSTBEG00000016482	PABPC5	100	95.550	Tupaia_belangeri
ENSPEMG00000000171	Pabpc5	100	93.979	ENSUAMG00000013627	PABPC5	100	93.979	Ursus_americanus
ENSPEMG00000000171	Pabpc5	100	93.717	ENSUMAG00000023934	PABPC5	100	93.717	Ursus_maritimus
ENSPEMG00000000171	Pabpc5	100	94.503	ENSVPAG00000001063	PABPC5	100	94.503	Vicugna_pacos
ENSPEMG00000000171	Pabpc5	100	94.241	ENSVVUG00000013172	PABPC5	100	94.241	Vulpes_vulpes