EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000000456 (Gene tree)
Gene ID: 102911390
Gene Symbol: Apobec3
Alias: -
Full Name: DNA dC->dU-editing enzyme APOBEC3-like
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 15134 bases
Position: chrKI615431.1:1650470-1665603
Accession: 102911390
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000000666	APOBEC_N	PF08210.11	2.2e-89	1	2
ENSPEMP00000000666	APOBEC_N	PF08210.11	2.2e-89	2	2
ENSPEMP00000000666	APOBEC_C	PF05240.14	2.1e-57	1	2
ENSPEMP00000000666	APOBEC_C	PF05240.14	2.1e-57	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000000672	-	1296	XM_006979195	ENSPEMP00000000666	431 (aa)	XP_006979257	-

Gene Model

Click here to download ENSPEMG00000000456's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000000456's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000000456	Apobec3	87	34.254	ENSPEMG00000005724	Apobec2	85	34.254
ENSPEMG00000000456	Apobec3	76	39.779	ENSPEMG00000008352	Aicda	86	41.104

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000000456	Apobec3	76	44.624	ENSG00000100298	APOBEC3H	100	45.161	Homo_sapiens
ENSPEMG00000000456	Apobec3	99	42.048	ENSAMEG00000010818	-	99	41.176	Ailuropoda_melanoleuca
ENSPEMG00000000456	Apobec3	78	47.805	ENSANAG00000025410	APOBEC3H	93	48.571	Aotus_nancymaae
ENSPEMG00000000456	Apobec3	88	42.636	ENSBTAG00000007755	APOBEC3H	87	50.000	Bos_taurus
ENSPEMG00000000456	Apobec3	79	46.703	ENSCJAG00000012524	APOBEC3H	90	48.571	Callithrix_jacchus
ENSPEMG00000000456	Apobec3	85	49.239	ENSCAFG00000001361	APOBEC3Z3	100	49.239	Canis_familiaris
ENSPEMG00000000456	Apobec3	79	48.649	ENSCAFG00020002584	-	91	49.162	Canis_lupus_dingo
ENSPEMG00000000456	Apobec3	88	43.411	ENSCHIG00000026580	-	96	43.411	Capra_hircus
ENSPEMG00000000456	Apobec3	77	48.864	ENSTSYG00000032894	-	100	48.864	Carlito_syrichta
ENSPEMG00000000456	Apobec3	100	42.921	ENSCPOG00000009257	-	100	41.000	Cavia_porcellus
ENSPEMG00000000456	Apobec3	74	48.925	ENSCCAG00000008525	APOBEC3H	96	47.573	Cebus_capucinus
ENSPEMG00000000456	Apobec3	77	48.901	ENSCATG00000030302	APOBEC3H	99	48.901	Cercocebus_atys
ENSPEMG00000000456	Apobec3	82	49.000	ENSCLAG00000016615	-	98	49.000	Chinchilla_lanigera
ENSPEMG00000000456	Apobec3	82	47.549	ENSCSAG00000006371	APOBEC3H	95	47.549	Chlorocebus_sabaeus
ENSPEMG00000000456	Apobec3	99	74.318	ENSCGRG00001022976	Apobec3	99	74.318	Cricetulus_griseus_chok1gshd
ENSPEMG00000000456	Apobec3	99	74.318	ENSCGRG00000005621	Apobec3	99	74.318	Cricetulus_griseus_crigri
ENSPEMG00000000456	Apobec3	95	49.524	ENSDORG00000027271	-	100	56.122	Dipodomys_ordii
ENSPEMG00000000456	Apobec3	87	44.493	ENSECAG00000007726	APOBEC3H	86	47.264	Equus_caballus
ENSPEMG00000000456	Apobec3	82	50.505	ENSFCAG00000005251	APOBEC3Z3	99	50.254	Felis_catus
ENSPEMG00000000456	Apobec3	84	49.457	ENSSTOG00000007125	-	86	49.198	Ictidomys_tridecemlineatus
ENSPEMG00000000456	Apobec3	99	47.442	ENSJJAG00000016840	-	99	47.442	Jaculus_jaculus
ENSPEMG00000000456	Apobec3	88	40.415	ENSLAFG00000027404	-	95	40.415	Loxodonta_africana
ENSPEMG00000000456	Apobec3	83	48.529	ENSMFAG00000031827	APOBEC3H	95	48.529	Macaca_fascicularis
ENSPEMG00000000456	Apobec3	83	48.039	ENSMMUG00000001016	APOBEC3H	95	48.039	Macaca_mulatta
ENSPEMG00000000456	Apobec3	83	48.529	ENSMNEG00000039259	APOBEC3H	95	48.529	Macaca_nemestrina
ENSPEMG00000000456	Apobec3	82	48.039	ENSMLEG00000033417	APOBEC3H	95	48.039	Mandrillus_leucophaeus
ENSPEMG00000000456	Apobec3	99	70.975	ENSMAUG00000011683	Apobec3	99	70.975	Mesocricetus_auratus
ENSPEMG00000000456	Apobec3	99	71.005	ENSMOCG00000021576	Apobec3	99	71.918	Microtus_ochrogaster
ENSPEMG00000000456	Apobec3	99	63.492	MGP_CAROLIEiJ_G0020029	Apobec3	98	66.265	Mus_caroli
ENSPEMG00000000456	Apobec3	99	62.812	ENSMUSG00000009585	Apobec3	98	69.880	Mus_musculus
ENSPEMG00000000456	Apobec3	99	64.027	MGP_PahariEiJ_G0020031	-	99	63.348	Mus_pahari
ENSPEMG00000000456	Apobec3	99	63.158	MGP_SPRETEiJ_G0020927	Apobec3	98	72.289	Mus_spretus
ENSPEMG00000000456	Apobec3	92	43.704	ENSMPUG00000013239	-	95	43.457	Mustela_putorius_furo
ENSPEMG00000000456	Apobec3	100	61.839	ENSNGAG00000018998	Apobec3	100	61.839	Nannospalax_galili
ENSPEMG00000000456	Apobec3	77	47.059	ENSNLEG00000015218	-	95	47.059	Nomascus_leucogenys
ENSPEMG00000000456	Apobec3	97	39.583	ENSOCUG00000023913	-	100	39.583	Oryctolagus_cuniculus
ENSPEMG00000000456	Apobec3	88	43.669	ENSOARG00000016290	APOBEC3F	97	43.669	Ovis_aries
ENSPEMG00000000456	Apobec3	76	46.774	ENSPPAG00000036522	APOBEC3H	100	46.774	Pan_paniscus
ENSPEMG00000000456	Apobec3	82	51.777	ENSPPRG00000003941	-	99	51.777	Panthera_pardus
ENSPEMG00000000456	Apobec3	88	41.038	ENSPPRG00000003675	-	100	41.038	Panthera_pardus
ENSPEMG00000000456	Apobec3	82	51.777	ENSPTIG00000010283	-	99	51.777	Panthera_tigris_altaica
ENSPEMG00000000456	Apobec3	76	46.774	ENSPTRG00000014390	APOBEC3H	100	46.774	Pan_troglodytes
ENSPEMG00000000456	Apobec3	83	49.020	ENSPANG00000010774	APOBEC3H	95	49.020	Papio_anubis
ENSPEMG00000000456	Apobec3	80	47.264	ENSPPYG00000011834	-	94	47.264	Pongo_abelii
ENSPEMG00000000456	Apobec3	81	39.326	ENSPCAG00000015655	-	99	39.326	Procavia_capensis
ENSPEMG00000000456	Apobec3	57	51.562	ENSPVAG00000024161	-	95	51.562	Pteropus_vampyrus
ENSPEMG00000000456	Apobec3	81	50.000	ENSPVAG00000009462	-	100	50.000	Pteropus_vampyrus
ENSPEMG00000000456	Apobec3	58	49.618	ENSPVAG00000024267	-	97	49.618	Pteropus_vampyrus
ENSPEMG00000000456	Apobec3	96	65.882	ENSRNOG00000016852	Apobec3	100	65.882	Rattus_norvegicus
ENSPEMG00000000456	Apobec3	83	46.602	ENSRBIG00000029088	APOBEC3H	96	46.602	Rhinopithecus_bieti
ENSPEMG00000000456	Apobec3	84	46.190	ENSRROG00000024699	APOBEC3H	96	46.602	Rhinopithecus_roxellana
ENSPEMG00000000456	Apobec3	78	50.543	ENSSBOG00000030005	APOBEC3H	100	51.408	Saimiri_boliviensis_boliviensis
ENSPEMG00000000456	Apobec3	99	42.534	ENSSSCG00000000091	APOBEC3B	97	43.429	Sus_scrofa
ENSPEMG00000000456	Apobec3	75	48.256	ENSTBEG00000001532	-	99	48.256	Tupaia_belangeri
ENSPEMG00000000456	Apobec3	74	47.778	ENSTTRG00000001266	-	99	47.778	Tursiops_truncatus
ENSPEMG00000000456	Apobec3	87	49.505	ENSUAMG00000004427	-	90	49.505	Ursus_americanus
ENSPEMG00000000456	Apobec3	86	52.792	ENSUMAG00000014435	-	99	52.792	Ursus_maritimus
ENSPEMG00000000456	Apobec3	58	48.000	ENSVPAG00000011108	-	99	48.000	Vicugna_pacos