EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPEMG00000001085 (Gene tree)
Gene ID: 102915296
Gene Symbol: Upf1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 22670 bases
Position: chrKI615727.1:795717-818386
Accession: 102915296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000001379	UPF1_Zn_bind	PF09416.10	6.4e-75	1	1
ENSPEMP00000001379	ResIII	PF04851.15	2.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000001481	-	4531	XM_006989168	ENSPEMP00000001379	1124 (aa)	XP_006989230	UPI00042ABDCF

Gene Model

Click here to download ENSPEMG00000001085's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000001085's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000001085	Upf1	100	98.583	ENSG00000005007	UPF1	100	98.583	Homo_sapiens
ENSPEMG00000001085	Upf1	100	91.571	ENSAPOG00000010916	-	100	91.571	Acanthochromis_polyacanthus
ENSPEMG00000001085	Upf1	100	90.531	ENSAPOG00000023773	upf1	100	90.619	Acanthochromis_polyacanthus
ENSPEMG00000001085	Upf1	100	98.050	ENSAMEG00000011474	UPF1	100	98.050	Ailuropoda_melanoleuca
ENSPEMG00000001085	Upf1	92	93.340	ENSACIG00000010985	-	100	93.436	Amphilophus_citrinellus
ENSPEMG00000001085	Upf1	100	90.274	ENSACIG00000019949	upf1	100	90.708	Amphilophus_citrinellus
ENSPEMG00000001085	Upf1	100	90.044	ENSAOCG00000018519	upf1	100	90.535	Amphiprion_ocellaris
ENSPEMG00000001085	Upf1	100	91.571	ENSAOCG00000006352	-	100	91.571	Amphiprion_ocellaris
ENSPEMG00000001085	Upf1	100	90.044	ENSAPEG00000016344	upf1	100	90.535	Amphiprion_percula
ENSPEMG00000001085	Upf1	100	91.571	ENSAPEG00000006292	-	100	91.571	Amphiprion_percula
ENSPEMG00000001085	Upf1	100	91.659	ENSATEG00000016606	-	100	91.659	Anabas_testudineus
ENSPEMG00000001085	Upf1	100	89.239	ENSATEG00000017867	upf1	100	89.939	Anabas_testudineus
ENSPEMG00000001085	Upf1	94	97.621	ENSAPLG00000009175	UPF1	99	97.621	Anas_platyrhynchos
ENSPEMG00000001085	Upf1	96	95.933	ENSANAG00000024107	UPF1	98	95.933	Aotus_nancymaae
ENSPEMG00000001085	Upf1	100	91.474	ENSACLG00000022630	-	100	91.385	Astatotilapia_calliptera
ENSPEMG00000001085	Upf1	100	90.009	ENSACLG00000007181	upf1	100	90.442	Astatotilapia_calliptera
ENSPEMG00000001085	Upf1	100	92.103	ENSAMXG00000042187	upf1	100	92.547	Astyanax_mexicanus
ENSPEMG00000001085	Upf1	100	98.669	ENSBTAG00000020922	UPF1	100	98.669	Bos_taurus
ENSPEMG00000001085	Upf1	89	50.391	WBGene00004880	smg-2	99	47.814	Caenorhabditis_elegans
ENSPEMG00000001085	Upf1	100	98.583	ENSCJAG00000019627	UPF1	100	98.583	Callithrix_jacchus
ENSPEMG00000001085	Upf1	100	98.584	ENSCAFG00000014578	UPF1	100	98.584	Canis_familiaris
ENSPEMG00000001085	Upf1	100	97.611	ENSCAFG00020012347	UPF1	100	97.611	Canis_lupus_dingo
ENSPEMG00000001085	Upf1	100	98.224	ENSCHIG00000011018	UPF1	100	98.224	Capra_hircus
ENSPEMG00000001085	Upf1	96	97.491	ENSTSYG00000008877	UPF1	99	97.491	Carlito_syrichta
ENSPEMG00000001085	Upf1	94	98.194	ENSCAPG00000005758	UPF1	95	98.194	Cavia_aperea
ENSPEMG00000001085	Upf1	100	96.359	ENSCPOG00000025463	UPF1	100	96.359	Cavia_porcellus
ENSPEMG00000001085	Upf1	100	98.754	ENSCCAG00000032175	UPF1	100	98.754	Cebus_capucinus
ENSPEMG00000001085	Upf1	95	97.751	ENSCATG00000040306	UPF1	98	97.751	Cercocebus_atys
ENSPEMG00000001085	Upf1	96	98.056	ENSCLAG00000004037	UPF1	100	99.240	Chinchilla_lanigera
ENSPEMG00000001085	Upf1	100	97.520	ENSCSAG00000005276	UPF1	100	97.520	Chlorocebus_sabaeus
ENSPEMG00000001085	Upf1	100	95.656	ENSCPBG00000012513	UPF1	100	95.656	Chrysemys_picta_bellii
ENSPEMG00000001085	Upf1	78	77.702	ENSCING00000021399	-	99	77.702	Ciona_intestinalis
ENSPEMG00000001085	Upf1	99	71.592	ENSCSAVG00000006533	-	99	71.592	Ciona_savignyi
ENSPEMG00000001085	Upf1	95	98.224	ENSCANG00000029819	UPF1	99	98.224	Colobus_angolensis_palliatus
ENSPEMG00000001085	Upf1	100	99.021	ENSCGRG00001021067	Upf1	100	99.021	Cricetulus_griseus_chok1gshd
ENSPEMG00000001085	Upf1	95	98.971	ENSCGRG00000013480	Upf1	99	98.971	Cricetulus_griseus_crigri
ENSPEMG00000001085	Upf1	100	91.563	ENSCSEG00000016159	-	100	91.474	Cynoglossus_semilaevis
ENSPEMG00000001085	Upf1	100	85.537	ENSCSEG00000017239	upf1	100	85.626	Cynoglossus_semilaevis
ENSPEMG00000001085	Upf1	100	91.304	ENSCVAG00000010561	upf1	100	91.216	Cyprinodon_variegatus
ENSPEMG00000001085	Upf1	100	91.925	ENSDARG00000016302	upf1	100	92.369	Danio_rerio
ENSPEMG00000001085	Upf1	95	95.794	ENSDORG00000009984	Upf1	96	95.794	Dipodomys_ordii
ENSPEMG00000001085	Upf1	85	70.092	FBgn0030354	Upf1	84	66.667	Drosophila_melanogaster
ENSPEMG00000001085	Upf1	55	85.072	ENSEBUG00000010069	upf1	96	84.912	Eptatretus_burgeri
ENSPEMG00000001085	Upf1	100	97.870	ENSEASG00005006549	UPF1	100	97.870	Equus_asinus_asinus
ENSPEMG00000001085	Upf1	100	97.870	ENSECAG00000010639	UPF1	100	97.870	Equus_caballus
ENSPEMG00000001085	Upf1	100	89.664	ENSELUG00000020917	upf1	100	89.929	Esox_lucius
ENSPEMG00000001085	Upf1	100	90.380	ENSELUG00000012916	-	100	90.829	Esox_lucius
ENSPEMG00000001085	Upf1	100	98.496	ENSFCAG00000009757	UPF1	100	98.496	Felis_catus
ENSPEMG00000001085	Upf1	94	96.777	ENSFALG00000009312	UPF1	96	96.777	Ficedula_albicollis
ENSPEMG00000001085	Upf1	97	97.059	ENSFDAG00000014816	UPF1	100	99.144	Fukomys_damarensis
ENSPEMG00000001085	Upf1	85	92.740	ENSFHEG00000016276	-	96	92.922	Fundulus_heteroclitus
ENSPEMG00000001085	Upf1	100	87.852	ENSFHEG00000006428	upf1	100	87.852	Fundulus_heteroclitus
ENSPEMG00000001085	Upf1	100	91.127	ENSGMOG00000007541	upf1	100	91.925	Gadus_morhua
ENSPEMG00000001085	Upf1	100	96.191	ENSGALG00000003220	UPF1	100	96.191	Gallus_gallus
ENSPEMG00000001085	Upf1	100	90.675	ENSGAFG00000004831	upf1	100	91.030	Gambusia_affinis
ENSPEMG00000001085	Upf1	62	93.475	ENSGAFG00000015443	-	88	91.209	Gambusia_affinis
ENSPEMG00000001085	Upf1	100	96.178	ENSGAGG00000022217	UPF1	100	96.178	Gopherus_agassizii
ENSPEMG00000001085	Upf1	94	98.006	ENSGGOG00000002608	UPF1	99	98.006	Gorilla_gorilla
ENSPEMG00000001085	Upf1	90	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSPEMG00000001085	Upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPEMG00000001085	Upf1	100	98.317	ENSHGLG00000010900	UPF1	100	98.317	Heterocephalus_glaber_female
ENSPEMG00000001085	Upf1	96	95.216	ENSHGLG00100005904	UPF1	99	95.216	Heterocephalus_glaber_male
ENSPEMG00000001085	Upf1	100	90.675	ENSHCOG00000008918	upf1	100	92.440	Hippocampus_comes
ENSPEMG00000001085	Upf1	100	92.547	ENSIPUG00000005108	UPF1	100	92.902	Ictalurus_punctatus
ENSPEMG00000001085	Upf1	100	99.021	ENSSTOG00000009196	UPF1	100	99.021	Ictidomys_tridecemlineatus
ENSPEMG00000001085	Upf1	100	99.288	ENSJJAG00000023151	Upf1	100	99.288	Jaculus_jaculus
ENSPEMG00000001085	Upf1	100	91.571	ENSKMAG00000004962	upf1	100	91.482	Kryptolebias_marmoratus
ENSPEMG00000001085	Upf1	100	88.606	ENSLBEG00000014862	upf1	100	89.658	Labrus_bergylta
ENSPEMG00000001085	Upf1	100	91.482	ENSLBEG00000027848	-	100	91.482	Labrus_bergylta
ENSPEMG00000001085	Upf1	62	96.413	ENSLACG00000008482	UPF1	100	96.413	Latimeria_chalumnae
ENSPEMG00000001085	Upf1	100	93.872	ENSLOCG00000002072	upf1	100	93.872	Lepisosteus_oculatus
ENSPEMG00000001085	Upf1	100	98.142	ENSLAFG00000014963	UPF1	100	98.142	Loxodonta_africana
ENSPEMG00000001085	Upf1	100	98.754	ENSMFAG00000037748	UPF1	100	98.754	Macaca_fascicularis
ENSPEMG00000001085	Upf1	100	98.932	ENSMMUG00000023286	UPF1	100	98.932	Macaca_mulatta
ENSPEMG00000001085	Upf1	100	98.754	ENSMNEG00000000046	UPF1	100	98.754	Macaca_nemestrina
ENSPEMG00000001085	Upf1	94	99.049	ENSMLEG00000028404	UPF1	100	99.049	Mandrillus_leucophaeus
ENSPEMG00000001085	Upf1	100	88.976	ENSMAMG00000006229	upf1	100	89.939	Mastacembelus_armatus
ENSPEMG00000001085	Upf1	100	90.861	ENSMAMG00000006231	-	100	91.304	Mastacembelus_armatus
ENSPEMG00000001085	Upf1	100	91.474	ENSMZEG00005016386	-	100	91.385	Maylandia_zebra
ENSPEMG00000001085	Upf1	100	89.073	ENSMZEG00005003489	upf1	100	90.158	Maylandia_zebra
ENSPEMG00000001085	Upf1	94	97.148	ENSMGAG00000004745	UPF1	100	97.148	Meleagris_gallopavo
ENSPEMG00000001085	Upf1	95	98.330	ENSMAUG00000011398	Upf1	97	98.330	Mesocricetus_auratus
ENSPEMG00000001085	Upf1	100	97.520	ENSMICG00000001659	UPF1	100	97.520	Microcebus_murinus
ENSPEMG00000001085	Upf1	100	99.822	ENSMOCG00000005699	Upf1	100	99.822	Microtus_ochrogaster
ENSPEMG00000001085	Upf1	100	89.778	ENSMMOG00000007881	upf1	100	90.142	Mola_mola
ENSPEMG00000001085	Upf1	94	91.263	ENSMMOG00000007537	-	99	91.358	Mola_mola
ENSPEMG00000001085	Upf1	100	97.352	ENSMODG00000003689	UPF1	100	97.352	Monodelphis_domestica
ENSPEMG00000001085	Upf1	100	90.044	ENSMALG00000000144	upf1	100	90.222	Monopterus_albus
ENSPEMG00000001085	Upf1	100	90.371	ENSMALG00000018100	-	100	90.371	Monopterus_albus
ENSPEMG00000001085	Upf1	100	99.822	MGP_CAROLIEiJ_G0031142	Upf1	100	99.822	Mus_caroli
ENSPEMG00000001085	Upf1	100	99.822	ENSMUSG00000058301	Upf1	100	99.822	Mus_musculus
ENSPEMG00000001085	Upf1	100	99.822	MGP_PahariEiJ_G0021607	Upf1	100	99.822	Mus_pahari
ENSPEMG00000001085	Upf1	100	99.822	MGP_SPRETEiJ_G0032260	Upf1	100	99.822	Mus_spretus
ENSPEMG00000001085	Upf1	100	97.611	ENSMPUG00000015516	UPF1	100	97.611	Mustela_putorius_furo
ENSPEMG00000001085	Upf1	99	97.247	ENSMLUG00000012122	UPF1	99	97.247	Myotis_lucifugus
ENSPEMG00000001085	Upf1	100	99.379	ENSNGAG00000024107	Upf1	100	99.379	Nannospalax_galili
ENSPEMG00000001085	Upf1	100	89.196	ENSNBRG00000022069	-	100	92.308	Neolamprologus_brichardi
ENSPEMG00000001085	Upf1	100	88.329	ENSNBRG00000000670	upf1	100	88.761	Neolamprologus_brichardi
ENSPEMG00000001085	Upf1	94	93.251	ENSNLEG00000006062	UPF1	100	93.251	Nomascus_leucogenys
ENSPEMG00000001085	Upf1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSPEMG00000001085	Upf1	89	98.785	ENSOPRG00000014018	UPF1	100	90.304	Ochotona_princeps
ENSPEMG00000001085	Upf1	100	97.776	ENSODEG00000012426	UPF1	100	97.776	Octodon_degus
ENSPEMG00000001085	Upf1	100	91.563	ENSONIG00000012729	-	100	91.474	Oreochromis_niloticus
ENSPEMG00000001085	Upf1	100	89.510	ENSONIG00000010452	upf1	100	90.598	Oreochromis_niloticus
ENSPEMG00000001085	Upf1	100	97.252	ENSOANG00000004568	UPF1	100	97.252	Ornithorhynchus_anatinus
ENSPEMG00000001085	Upf1	100	91.482	ENSORLG00000008453	upf1	100	91.482	Oryzias_latipes
ENSPEMG00000001085	Upf1	100	91.312	ENSORLG00020014758	upf1	100	91.312	Oryzias_latipes_hni
ENSPEMG00000001085	Upf1	100	91.312	ENSORLG00015010165	upf1	100	91.312	Oryzias_latipes_hsok
ENSPEMG00000001085	Upf1	100	91.571	ENSOMEG00000003665	upf1	100	91.482	Oryzias_melastigma
ENSPEMG00000001085	Upf1	100	97.697	ENSOGAG00000012866	UPF1	100	97.697	Otolemur_garnettii
ENSPEMG00000001085	Upf1	96	96.685	ENSOARG00000010739	UPF1	100	96.685	Ovis_aries
ENSPEMG00000001085	Upf1	95	98.224	ENSPPAG00000043884	UPF1	97	98.224	Pan_paniscus
ENSPEMG00000001085	Upf1	100	98.496	ENSPPRG00000023470	UPF1	100	98.496	Panthera_pardus
ENSPEMG00000001085	Upf1	94	96.194	ENSPTIG00000010159	UPF1	99	96.194	Panthera_tigris_altaica
ENSPEMG00000001085	Upf1	100	98.754	ENSPTRG00000010721	UPF1	100	98.754	Pan_troglodytes
ENSPEMG00000001085	Upf1	100	98.754	ENSPANG00000008847	UPF1	100	98.754	Papio_anubis
ENSPEMG00000001085	Upf1	91	93.981	ENSPKIG00000006069	upf1	99	91.533	Paramormyrops_kingsleyae
ENSPEMG00000001085	Upf1	68	97.255	ENSPSIG00000009491	UPF1	100	97.255	Pelodiscus_sinensis
ENSPEMG00000001085	Upf1	100	88.407	ENSPMGG00000017327	upf1	100	88.516	Periophthalmus_magnuspinnatus
ENSPEMG00000001085	Upf1	100	87.111	ENSPMAG00000001206	upf1	100	86.549	Petromyzon_marinus
ENSPEMG00000001085	Upf1	100	96.988	ENSPCIG00000006156	UPF1	100	96.988	Phascolarctos_cinereus
ENSPEMG00000001085	Upf1	100	90.764	ENSPLAG00000016232	-	100	91.119	Poecilia_latipinna
ENSPEMG00000001085	Upf1	100	88.556	ENSPLAG00000018155	-	100	88.468	Poecilia_latipinna
ENSPEMG00000001085	Upf1	100	89.017	ENSPMEG00000011443	-	100	88.928	Poecilia_mexicana
ENSPEMG00000001085	Upf1	100	90.853	ENSPMEG00000016319	-	100	91.208	Poecilia_mexicana
ENSPEMG00000001085	Upf1	100	88.850	ENSPREG00000009940	upf1	100	88.850	Poecilia_reticulata
ENSPEMG00000001085	Upf1	100	90.586	ENSPREG00000011247	-	100	90.941	Poecilia_reticulata
ENSPEMG00000001085	Upf1	100	93.623	ENSPPYG00000009752	UPF1	100	93.623	Pongo_abelii
ENSPEMG00000001085	Upf1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSPEMG00000001085	Upf1	100	98.932	ENSPCOG00000023813	UPF1	100	98.932	Propithecus_coquereli
ENSPEMG00000001085	Upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPEMG00000001085	Upf1	100	89.073	ENSPNYG00000003694	upf1	100	90.158	Pundamilia_nyererei
ENSPEMG00000001085	Upf1	100	91.474	ENSPNYG00000016731	-	100	91.385	Pundamilia_nyererei
ENSPEMG00000001085	Upf1	100	92.103	ENSPNAG00000025614	upf1	100	92.547	Pygocentrus_nattereri
ENSPEMG00000001085	Upf1	100	99.911	ENSRNOG00000020134	Upf1	100	99.911	Rattus_norvegicus
ENSPEMG00000001085	Upf1	95	95.888	ENSRBIG00000013894	UPF1	98	97.619	Rhinopithecus_bieti
ENSPEMG00000001085	Upf1	95	98.224	ENSRROG00000040935	UPF1	99	98.224	Rhinopithecus_roxellana
ENSPEMG00000001085	Upf1	76	55.309	YMR080C	NAM7	86	55.309	Saccharomyces_cerevisiae
ENSPEMG00000001085	Upf1	96	97.312	ENSSBOG00000023632	UPF1	99	97.312	Saimiri_boliviensis_boliviensis
ENSPEMG00000001085	Upf1	94	98.291	ENSSHAG00000010499	UPF1	100	98.291	Sarcophilus_harrisii
ENSPEMG00000001085	Upf1	100	94.139	ENSSFOG00015021095	upf1	99	95.817	Scleropages_formosus
ENSPEMG00000001085	Upf1	100	88.256	ENSSMAG00000005055	upf1	100	88.967	Scophthalmus_maximus
ENSPEMG00000001085	Upf1	100	91.571	ENSSMAG00000021018	-	100	91.571	Scophthalmus_maximus
ENSPEMG00000001085	Upf1	100	89.239	ENSSDUG00000013320	upf1	100	90.026	Seriola_dumerili
ENSPEMG00000001085	Upf1	100	91.837	ENSSDUG00000009629	-	100	91.837	Seriola_dumerili
ENSPEMG00000001085	Upf1	100	91.837	ENSSLDG00000006878	-	100	91.837	Seriola_lalandi_dorsalis
ENSPEMG00000001085	Upf1	100	90.026	ENSSLDG00000020868	upf1	100	90.308	Seriola_lalandi_dorsalis
ENSPEMG00000001085	Upf1	100	96.000	ENSSPUG00000010538	UPF1	100	96.000	Sphenodon_punctatus
ENSPEMG00000001085	Upf1	100	91.652	ENSSPAG00000011521	-	100	91.563	Stegastes_partitus
ENSPEMG00000001085	Upf1	100	88.455	ENSSPAG00000000003	upf1	100	88.496	Stegastes_partitus
ENSPEMG00000001085	Upf1	100	98.580	ENSSSCG00000039301	UPF1	100	98.580	Sus_scrofa
ENSPEMG00000001085	Upf1	83	89.468	ENSTGUG00000001057	UPF1	100	95.273	Taeniopygia_guttata
ENSPEMG00000001085	Upf1	100	90.586	ENSTRUG00000005131	-	100	90.586	Takifugu_rubripes
ENSPEMG00000001085	Upf1	100	89.628	ENSTRUG00000000150	upf1	100	89.600	Takifugu_rubripes
ENSPEMG00000001085	Upf1	100	93.611	ENSTTRG00000011544	UPF1	100	93.434	Tursiops_truncatus
ENSPEMG00000001085	Upf1	100	97.522	ENSUAMG00000007093	UPF1	100	97.522	Ursus_americanus
ENSPEMG00000001085	Upf1	95	98.223	ENSUMAG00000006652	UPF1	99	98.223	Ursus_maritimus
ENSPEMG00000001085	Upf1	100	97.611	ENSVVUG00000007797	UPF1	100	97.611	Vulpes_vulpes
ENSPEMG00000001085	Upf1	100	82.026	ENSXETG00000013602	upf1	100	81.938	Xenopus_tropicalis
ENSPEMG00000001085	Upf1	93	92.706	ENSXCOG00000005764	-	100	93.186	Xiphophorus_couchianus
ENSPEMG00000001085	Upf1	97	88.797	ENSXCOG00000015275	-	96	88.705	Xiphophorus_couchianus
ENSPEMG00000001085	Upf1	100	89.076	ENSXMAG00000001703	-	100	88.988	Xiphophorus_maculatus
ENSPEMG00000001085	Upf1	100	90.675	ENSXMAG00000002540	-	100	91.030	Xiphophorus_maculatus