EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPEMG00000001819 (Gene tree)
Gene ID: 102905241
Gene Symbol: Smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Minus strand
Length: 30736 bases
Position: chrKI615391.1:3858088-3888823
Accession: 102905241
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000001905	EST1	PF10374.9	7.9e-24	1	1
ENSPEMP00000001905	EST1_DNA_bind	PF10373.9	4e-40	1	2
ENSPEMP00000001905	EST1_DNA_bind	PF10373.9	4e-40	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000002358	-	4424	XM_006976385	ENSPEMP00000001905	1017 (aa)	XP_006976447	UPI00042AD243

Gene Model

Click here to download ENSPEMG00000001819's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000001819's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000001819	Smg5	100	92.731	ENSG00000198952	SMG5	100	93.026	Homo_sapiens
ENSPEMG00000001819	Smg5	99	67.357	ENSAPOG00000019690	smg5	99	67.554	Acanthochromis_polyacanthus
ENSPEMG00000001819	Smg5	98	88.543	ENSAMEG00000014458	SMG5	100	88.744	Ailuropoda_melanoleuca
ENSPEMG00000001819	Smg5	99	65.058	ENSACIG00000001353	smg5	99	65.964	Amphilophus_citrinellus
ENSPEMG00000001819	Smg5	98	64.787	ENSAOCG00000019483	smg5	99	61.875	Amphiprion_ocellaris
ENSPEMG00000001819	Smg5	98	66.235	ENSAPEG00000022949	smg5	98	66.633	Amphiprion_percula
ENSPEMG00000001819	Smg5	99	65.861	ENSATEG00000005348	smg5	99	66.439	Anabas_testudineus
ENSPEMG00000001819	Smg5	98	77.832	ENSAPLG00000010263	SMG5	100	77.561	Anas_platyrhynchos
ENSPEMG00000001819	Smg5	100	92.436	ENSANAG00000032899	SMG5	100	92.731	Aotus_nancymaae
ENSPEMG00000001819	Smg5	99	64.553	ENSACLG00000009311	smg5	99	66.570	Astatotilapia_calliptera
ENSPEMG00000001819	Smg5	99	61.996	ENSAMXG00000024616	smg5	99	62.489	Astyanax_mexicanus
ENSPEMG00000001819	Smg5	100	91.552	ENSBTAG00000009435	SMG5	100	91.945	Bos_taurus
ENSPEMG00000001819	Smg5	99	43.762	ENSBTAG00000021747	-	99	43.256	Bos_taurus
ENSPEMG00000001819	Smg5	100	92.338	ENSCJAG00000005684	SMG5	100	92.633	Callithrix_jacchus
ENSPEMG00000001819	Smg5	100	90.462	ENSCAFG00000016839	SMG5	100	90.855	Canis_familiaris
ENSPEMG00000001819	Smg5	100	90.462	ENSCAFG00020006061	SMG5	100	90.855	Canis_lupus_dingo
ENSPEMG00000001819	Smg5	99	44.023	ENSCHIG00000006323	-	99	43.805	Capra_hircus
ENSPEMG00000001819	Smg5	100	91.454	ENSCHIG00000007709	SMG5	100	91.847	Capra_hircus
ENSPEMG00000001819	Smg5	100	91.658	ENSTSYG00000004099	SMG5	100	91.855	Carlito_syrichta
ENSPEMG00000001819	Smg5	97	71.501	ENSCAPG00000003631	SMG5	100	72.378	Cavia_aperea
ENSPEMG00000001819	Smg5	100	92.043	ENSCPOG00000015696	SMG5	100	92.043	Cavia_porcellus
ENSPEMG00000001819	Smg5	100	92.043	ENSCCAG00000027409	SMG5	100	92.338	Cebus_capucinus
ENSPEMG00000001819	Smg5	100	93.026	ENSCATG00000030539	SMG5	100	93.418	Cercocebus_atys
ENSPEMG00000001819	Smg5	100	92.633	ENSCLAG00000003983	SMG5	100	92.633	Chinchilla_lanigera
ENSPEMG00000001819	Smg5	100	92.927	ENSCSAG00000002120	SMG5	100	93.320	Chlorocebus_sabaeus
ENSPEMG00000001819	Smg5	54	90.876	ENSCHOG00000008741	-	57	90.876	Choloepus_hoffmanni
ENSPEMG00000001819	Smg5	94	76.572	ENSCPBG00000025848	SMG5	100	77.282	Chrysemys_picta_bellii
ENSPEMG00000001819	Smg5	93	35.246	ENSCING00000008706	-	99	35.000	Ciona_intestinalis
ENSPEMG00000001819	Smg5	100	89.096	ENSCANG00000029208	SMG5	100	88.802	Colobus_angolensis_palliatus
ENSPEMG00000001819	Smg5	100	98.623	ENSCGRG00001006336	Smg5	100	98.623	Cricetulus_griseus_chok1gshd
ENSPEMG00000001819	Smg5	98	98.691	ENSCGRG00000005111	Smg5	100	98.690	Cricetulus_griseus_crigri
ENSPEMG00000001819	Smg5	99	64.809	ENSCSEG00000014220	smg5	99	66.078	Cynoglossus_semilaevis
ENSPEMG00000001819	Smg5	99	60.861	ENSCVAG00000000529	smg5	99	61.230	Cyprinodon_variegatus
ENSPEMG00000001819	Smg5	100	87.917	ENSDNOG00000000051	SMG5	100	88.114	Dasypus_novemcinctus
ENSPEMG00000001819	Smg5	92	36.479	ENSDNOG00000039862	-	100	35.949	Dasypus_novemcinctus
ENSPEMG00000001819	Smg5	100	91.454	ENSDORG00000010382	Smg5	100	91.061	Dipodomys_ordii
ENSPEMG00000001819	Smg5	82	93.204	ENSETEG00000010336	SMG5	89	93.204	Echinops_telfairi
ENSPEMG00000001819	Smg5	90	47.028	ENSEBUG00000003739	smg5	98	47.402	Eptatretus_burgeri
ENSPEMG00000001819	Smg5	100	91.945	ENSEASG00005019122	SMG5	100	91.847	Equus_asinus_asinus
ENSPEMG00000001819	Smg5	100	91.945	ENSECAG00000001389	SMG5	100	91.847	Equus_caballus
ENSPEMG00000001819	Smg5	72	96.830	ENSEEUG00000012690	SMG5	73	96.830	Erinaceus_europaeus
ENSPEMG00000001819	Smg5	99	65.411	ENSELUG00000012585	smg5	99	64.831	Esox_lucius
ENSPEMG00000001819	Smg5	100	89.686	ENSFCAG00000011783	SMG5	100	90.275	Felis_catus
ENSPEMG00000001819	Smg5	58	80.167	ENSFALG00000001166	-	99	79.967	Ficedula_albicollis
ENSPEMG00000001819	Smg5	98	90.232	ENSFDAG00000017388	SMG5	100	90.030	Fukomys_damarensis
ENSPEMG00000001819	Smg5	97	62.500	ENSFHEG00000013939	smg5	95	68.827	Fundulus_heteroclitus
ENSPEMG00000001819	Smg5	99	61.327	ENSGMOG00000007310	smg5	99	60.827	Gadus_morhua
ENSPEMG00000001819	Smg5	99	77.146	ENSGALG00000029918	-	100	76.521	Gallus_gallus
ENSPEMG00000001819	Smg5	72	76.526	ENSGAFG00000021691	smg5	97	67.732	Gambusia_affinis
ENSPEMG00000001819	Smg5	100	78.199	ENSGAGG00000016131	SMG5	100	78.253	Gopherus_agassizii
ENSPEMG00000001819	Smg5	100	92.436	ENSGGOG00000010932	SMG5	100	92.731	Gorilla_gorilla
ENSPEMG00000001819	Smg5	99	64.841	ENSHBUG00000008654	smg5	99	65.580	Haplochromis_burtoni
ENSPEMG00000001819	Smg5	100	89.882	ENSHGLG00000019152	SMG5	100	89.882	Heterocephalus_glaber_female
ENSPEMG00000001819	Smg5	90	89.912	ENSHGLG00100015948	SMG5	99	89.912	Heterocephalus_glaber_male
ENSPEMG00000001819	Smg5	86	72.861	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSPEMG00000001819	Smg5	99	61.040	ENSIPUG00000006624	Smg5	99	61.861	Ictalurus_punctatus
ENSPEMG00000001819	Smg5	100	92.829	ENSSTOG00000001780	SMG5	100	93.124	Ictidomys_tridecemlineatus
ENSPEMG00000001819	Smg5	100	92.451	ENSJJAG00000022763	Smg5	100	92.647	Jaculus_jaculus
ENSPEMG00000001819	Smg5	50	60.073	ENSKMAG00000014586	smg5	99	61.170	Kryptolebias_marmoratus
ENSPEMG00000001819	Smg5	99	65.731	ENSLBEG00000002145	smg5	99	66.345	Labrus_bergylta
ENSPEMG00000001819	Smg5	100	64.129	ENSLACG00000010521	SMG5	100	64.320	Latimeria_chalumnae
ENSPEMG00000001819	Smg5	100	90.177	ENSLAFG00000006241	SMG5	100	89.882	Loxodonta_africana
ENSPEMG00000001819	Smg5	100	92.927	ENSMFAG00000045357	SMG5	100	93.320	Macaca_fascicularis
ENSPEMG00000001819	Smg5	100	92.927	ENSMMUG00000000090	SMG5	100	93.320	Macaca_mulatta
ENSPEMG00000001819	Smg5	100	92.829	ENSMNEG00000044425	SMG5	100	93.222	Macaca_nemestrina
ENSPEMG00000001819	Smg5	100	86.595	ENSMLEG00000041192	SMG5	100	86.595	Mandrillus_leucophaeus
ENSPEMG00000001819	Smg5	99	61.091	ENSMAMG00000010683	smg5	100	61.437	Mastacembelus_armatus
ENSPEMG00000001819	Smg5	99	63.610	ENSMZEG00005015815	smg5	99	64.841	Maylandia_zebra
ENSPEMG00000001819	Smg5	63	58.359	ENSMZEG00005016543	smg5	100	60.000	Maylandia_zebra
ENSPEMG00000001819	Smg5	100	97.345	ENSMAUG00000010381	Smg5	100	97.345	Mesocricetus_auratus
ENSPEMG00000001819	Smg5	55	43.531	ENSMAUG00000000043	-	96	44.021	Mesocricetus_auratus
ENSPEMG00000001819	Smg5	100	93.222	ENSMICG00000002257	SMG5	100	93.517	Microcebus_murinus
ENSPEMG00000001819	Smg5	100	97.350	ENSMOCG00000016590	Smg5	100	97.350	Microtus_ochrogaster
ENSPEMG00000001819	Smg5	99	58.692	ENSMMOG00000017199	smg5	99	60.090	Mola_mola
ENSPEMG00000001819	Smg5	93	39.024	ENSMODG00000004532	-	83	38.933	Monodelphis_domestica
ENSPEMG00000001819	Smg5	79	38.592	ENSMODG00000010675	-	84	38.992	Monodelphis_domestica
ENSPEMG00000001819	Smg5	97	35.509	ENSMODG00000004511	-	99	34.847	Monodelphis_domestica
ENSPEMG00000001819	Smg5	74	40.909	ENSMODG00000004735	-	86	40.909	Monodelphis_domestica
ENSPEMG00000001819	Smg5	87	87.514	ENSMODG00000016901	SMG5	98	87.177	Monodelphis_domestica
ENSPEMG00000001819	Smg5	99	60.268	ENSMALG00000010375	smg5	99	60.465	Monopterus_albus
ENSPEMG00000001819	Smg5	100	97.345	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSPEMG00000001819	Smg5	100	97.443	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSPEMG00000001819	Smg5	100	97.056	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSPEMG00000001819	Smg5	100	97.443	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSPEMG00000001819	Smg5	94	88.433	ENSMPUG00000004546	SMG5	100	88.854	Mustela_putorius_furo
ENSPEMG00000001819	Smg5	100	91.773	ENSMLUG00000008518	SMG5	100	91.871	Myotis_lucifugus
ENSPEMG00000001819	Smg5	98	44.444	ENSNGAG00000012101	-	98	44.423	Nannospalax_galili
ENSPEMG00000001819	Smg5	100	93.222	ENSNGAG00000020706	Smg5	100	92.829	Nannospalax_galili
ENSPEMG00000001819	Smg5	96	63.105	ENSNBRG00000004332	smg5	98	64.085	Neolamprologus_brichardi
ENSPEMG00000001819	Smg5	100	92.436	ENSNLEG00000012439	SMG5	100	92.731	Nomascus_leucogenys
ENSPEMG00000001819	Smg5	100	85.560	ENSMEUG00000012834	SMG5	100	85.265	Notamacropus_eugenii
ENSPEMG00000001819	Smg5	100	90.864	ENSOPRG00000009152	SMG5	100	90.963	Ochotona_princeps
ENSPEMG00000001819	Smg5	100	91.749	ENSODEG00000012237	SMG5	100	91.749	Octodon_degus
ENSPEMG00000001819	Smg5	89	40.765	ENSOCUG00000023338	-	99	40.546	Oryctolagus_cuniculus
ENSPEMG00000001819	Smg5	98	91.851	ENSOCUG00000012886	SMG5	100	92.052	Oryctolagus_cuniculus
ENSPEMG00000001819	Smg5	99	60.252	ENSORLG00000016239	smg5	99	61.935	Oryzias_latipes
ENSPEMG00000001819	Smg5	99	64.195	ENSORLG00020013127	smg5	99	65.751	Oryzias_latipes_hni
ENSPEMG00000001819	Smg5	99	63.911	ENSORLG00015019014	smg5	99	65.851	Oryzias_latipes_hsok
ENSPEMG00000001819	Smg5	82	58.539	ENSOMEG00000021330	smg5	92	60.432	Oryzias_melastigma
ENSPEMG00000001819	Smg5	100	91.159	ENSOGAG00000004966	SMG5	100	91.454	Otolemur_garnettii
ENSPEMG00000001819	Smg5	100	91.552	ENSOARG00000005778	SMG5	100	91.945	Ovis_aries
ENSPEMG00000001819	Smg5	99	43.744	ENSOARG00000011963	-	99	43.369	Ovis_aries
ENSPEMG00000001819	Smg5	100	92.534	ENSPPAG00000011996	SMG5	100	92.829	Pan_paniscus
ENSPEMG00000001819	Smg5	98	89.437	ENSPPRG00000011901	SMG5	100	90.030	Panthera_pardus
ENSPEMG00000001819	Smg5	99	81.891	ENSPTIG00000007892	SMG5	98	83.013	Panthera_tigris_altaica
ENSPEMG00000001819	Smg5	100	92.731	ENSPTRG00000049282	-	100	93.026	Pan_troglodytes
ENSPEMG00000001819	Smg5	100	92.731	ENSPTRG00000023925	SMG5	100	93.026	Pan_troglodytes
ENSPEMG00000001819	Smg5	100	93.026	ENSPANG00000011201	SMG5	100	93.418	Papio_anubis
ENSPEMG00000001819	Smg5	99	65.504	ENSPKIG00000009402	smg5	99	66.569	Paramormyrops_kingsleyae
ENSPEMG00000001819	Smg5	98	78.932	ENSPSIG00000015198	SMG5	100	78.968	Pelodiscus_sinensis
ENSPEMG00000001819	Smg5	99	59.582	ENSPMGG00000010465	smg5	99	59.107	Periophthalmus_magnuspinnatus
ENSPEMG00000001819	Smg5	99	50.097	ENSPMAG00000000410	smg5	100	50.142	Petromyzon_marinus
ENSPEMG00000001819	Smg5	100	86.948	ENSPCIG00000018938	SMG5	100	86.654	Phascolarctos_cinereus
ENSPEMG00000001819	Smg5	99	65.670	ENSPMEG00000014105	smg5	99	65.992	Poecilia_mexicana
ENSPEMG00000001819	Smg5	50	60.595	ENSPREG00000017713	smg5	99	62.050	Poecilia_reticulata
ENSPEMG00000001819	Smg5	100	92.633	ENSPPYG00000000723	SMG5	100	92.927	Pongo_abelii
ENSPEMG00000001819	Smg5	75	95.580	ENSPCAG00000008412	SMG5	81	95.580	Procavia_capensis
ENSPEMG00000001819	Smg5	100	92.829	ENSPCOG00000004741	SMG5	100	93.124	Propithecus_coquereli
ENSPEMG00000001819	Smg5	100	82.498	ENSPVAG00000016748	SMG5	100	82.711	Pteropus_vampyrus
ENSPEMG00000001819	Smg5	99	58.348	ENSPNYG00000013397	smg5	99	61.313	Pundamilia_nyererei
ENSPEMG00000001819	Smg5	99	61.810	ENSPNAG00000028363	smg5	99	62.545	Pygocentrus_nattereri
ENSPEMG00000001819	Smg5	100	97.443	ENSRNOG00000019590	Smg5	100	97.443	Rattus_norvegicus
ENSPEMG00000001819	Smg5	100	92.731	ENSRBIG00000027428	SMG5	100	93.124	Rhinopithecus_bieti
ENSPEMG00000001819	Smg5	100	92.633	ENSRROG00000030035	SMG5	100	93.026	Rhinopithecus_roxellana
ENSPEMG00000001819	Smg5	100	92.240	ENSSBOG00000033339	SMG5	100	92.534	Saimiri_boliviensis_boliviensis
ENSPEMG00000001819	Smg5	98	86.400	ENSSHAG00000014163	SMG5	100	86.100	Sarcophilus_harrisii
ENSPEMG00000001819	Smg5	64	40.351	ENSSHAG00000000935	-	81	40.854	Sarcophilus_harrisii
ENSPEMG00000001819	Smg5	99	32.757	ENSSHAG00000009572	-	78	43.147	Sarcophilus_harrisii
ENSPEMG00000001819	Smg5	87	39.793	ENSSHAG00000000561	-	87	39.314	Sarcophilus_harrisii
ENSPEMG00000001819	Smg5	99	66.310	ENSSFOG00015024175	smg5	99	65.734	Scleropages_formosus
ENSPEMG00000001819	Smg5	99	59.462	ENSSLDG00000011418	smg5	99	61.532	Seriola_lalandi_dorsalis
ENSPEMG00000001819	Smg5	90	78.128	ENSSARG00000012484	SMG5	100	77.584	Sorex_araneus
ENSPEMG00000001819	Smg5	94	76.441	ENSSPUG00000002260	SMG5	100	76.215	Sphenodon_punctatus
ENSPEMG00000001819	Smg5	91	76.415	ENSSPAG00000014266	smg5	98	65.598	Stegastes_partitus
ENSPEMG00000001819	Smg5	100	92.534	ENSSSCG00000006490	-	100	93.026	Sus_scrofa
ENSPEMG00000001819	Smg5	99	71.949	ENSSSCG00000039308	-	100	72.047	Sus_scrofa
ENSPEMG00000001819	Smg5	99	79.191	ENSTGUG00000003748	-	100	78.676	Taeniopygia_guttata
ENSPEMG00000001819	Smg5	99	64.860	ENSTRUG00000012580	smg5	99	64.472	Takifugu_rubripes
ENSPEMG00000001819	Smg5	99	65.175	ENSTNIG00000010303	smg5	99	65.175	Tetraodon_nigroviridis
ENSPEMG00000001819	Smg5	60	99.015	ENSTBEG00000002777	SMG5	60	99.015	Tupaia_belangeri
ENSPEMG00000001819	Smg5	100	87.819	ENSTTRG00000001401	SMG5	100	87.033	Tursiops_truncatus
ENSPEMG00000001819	Smg5	100	89.096	ENSUAMG00000013721	SMG5	100	89.577	Ursus_americanus
ENSPEMG00000001819	Smg5	98	84.739	ENSUMAG00000018041	SMG5	97	85.141	Ursus_maritimus
ENSPEMG00000001819	Smg5	98	82.075	ENSVPAG00000009446	SMG5	99	82.075	Vicugna_pacos
ENSPEMG00000001819	Smg5	100	90.864	ENSVVUG00000005887	SMG5	100	90.757	Vulpes_vulpes
ENSPEMG00000001819	Smg5	77	64.780	ENSXETG00000033791	SMG5	99	64.403	Xenopus_tropicalis
ENSPEMG00000001819	Smg5	60	75.463	ENSXCOG00000004379	smg5	96	69.780	Xiphophorus_couchianus
ENSPEMG00000001819	Smg5	99	65.628	ENSXMAG00000013499	smg5	99	66.084	Xiphophorus_maculatus