EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPEMG00000011315 (Gene tree)
Gene ID: 102915057
Gene Symbol: Smg7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 73178 bases
Position: chrKI615448.1:1472699-1545876
Accession: 102915057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000010288	EST1	PF10374.9	6.9e-25	1	1
ENSPEMP00000010294	EST1	PF10374.9	7.2e-25	1	1
ENSPEMP00000010278	EST1	PF10374.9	7.2e-25	1	1
ENSPEMP00000010285	EST1	PF10374.9	7.3e-25	1	1
ENSPEMP00000010288	EST1_DNA_bind	PF10373.9	1.8e-55	1	1
ENSPEMP00000010294	EST1_DNA_bind	PF10373.9	1.9e-55	1	1
ENSPEMP00000010278	EST1_DNA_bind	PF10373.9	1.9e-55	1	1
ENSPEMP00000010285	EST1_DNA_bind	PF10373.9	1.9e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000014463	-	3330	-	ENSPEMP00000010288	1109 (aa)	-	-
ENSPEMT00000014453	-	5796	XM_006979926	ENSPEMP00000010278	1140 (aa)	XP_006979988	UPI00042AAF29
ENSPEMT00000014469	-	3417	-	ENSPEMP00000010294	1138 (aa)	-	-
ENSPEMT00000014460	-	5885	XM_015998548	ENSPEMP00000010285	1148 (aa)	XP_015854034	UPI00077DC385

Gene Model

Click here to download ENSPEMG00000011315's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000011315's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000011315	Smg7	100	95.213	ENSG00000116698	SMG7	100	95.238	Homo_sapiens
ENSPEMG00000011315	Smg7	94	71.450	ENSAPOG00000009611	smg7	95	72.054	Acanthochromis_polyacanthus
ENSPEMG00000011315	Smg7	100	91.416	ENSAMEG00000002357	SMG7	100	90.917	Ailuropoda_melanoleuca
ENSPEMG00000011315	Smg7	97	63.003	ENSACIG00000015152	smg7	98	67.123	Amphilophus_citrinellus
ENSPEMG00000011315	Smg7	99	64.828	ENSAOCG00000013538	smg7	99	65.232	Amphiprion_ocellaris
ENSPEMG00000011315	Smg7	99	64.858	ENSAPEG00000007851	smg7	99	65.262	Amphiprion_percula
ENSPEMG00000011315	Smg7	99	64.469	ENSATEG00000006931	smg7	99	64.812	Anabas_testudineus
ENSPEMG00000011315	Smg7	99	85.260	ENSAPLG00000015811	SMG7	99	85.084	Anas_platyrhynchos
ENSPEMG00000011315	Smg7	100	82.957	ENSACAG00000014989	SMG7	100	83.292	Anolis_carolinensis
ENSPEMG00000011315	Smg7	97	94.837	ENSANAG00000028114	SMG7	100	91.238	Aotus_nancymaae
ENSPEMG00000011315	Smg7	99	64.127	ENSACLG00000022079	smg7	99	65.195	Astatotilapia_calliptera
ENSPEMG00000011315	Smg7	99	65.819	ENSAMXG00000020809	smg7	99	65.674	Astyanax_mexicanus
ENSPEMG00000011315	Smg7	100	94.430	ENSBTAG00000008003	SMG7	98	94.430	Bos_taurus
ENSPEMG00000011315	Smg7	100	94.778	ENSCJAG00000005135	SMG7	99	94.778	Callithrix_jacchus
ENSPEMG00000011315	Smg7	100	94.604	ENSCAFG00000013276	SMG7	98	94.778	Canis_familiaris
ENSPEMG00000011315	Smg7	100	94.604	ENSCAFG00020015475	SMG7	98	94.778	Canis_lupus_dingo
ENSPEMG00000011315	Smg7	99	94.351	ENSCHIG00000018192	SMG7	99	94.351	Capra_hircus
ENSPEMG00000011315	Smg7	100	94.691	ENSTSYG00000002667	SMG7	98	94.691	Carlito_syrichta
ENSPEMG00000011315	Smg7	100	94.778	ENSCPOG00000008906	SMG7	99	94.952	Cavia_porcellus
ENSPEMG00000011315	Smg7	99	91.755	ENSCCAG00000028596	SMG7	100	91.092	Cebus_capucinus
ENSPEMG00000011315	Smg7	100	95.387	ENSCATG00000011063	SMG7	98	95.387	Cercocebus_atys
ENSPEMG00000011315	Smg7	100	94.778	ENSCLAG00000010751	SMG7	100	94.778	Chinchilla_lanigera
ENSPEMG00000011315	Smg7	100	95.213	ENSCSAG00000012654	SMG7	98	95.213	Chlorocebus_sabaeus
ENSPEMG00000011315	Smg7	92	86.533	ENSCHOG00000010522	SMG7	93	86.819	Choloepus_hoffmanni
ENSPEMG00000011315	Smg7	100	87.227	ENSCPBG00000015724	SMG7	100	87.059	Chrysemys_picta_bellii
ENSPEMG00000011315	Smg7	100	92.035	ENSCANG00000015680	SMG7	100	91.354	Colobus_angolensis_palliatus
ENSPEMG00000011315	Smg7	100	97.561	ENSCGRG00001013705	Smg7	100	97.544	Cricetulus_griseus_chok1gshd
ENSPEMG00000011315	Smg7	100	97.561	ENSCGRG00000018401	Smg7	100	97.561	Cricetulus_griseus_crigri
ENSPEMG00000011315	Smg7	95	69.000	ENSCVAG00000011842	smg7	100	68.500	Cyprinodon_variegatus
ENSPEMG00000011315	Smg7	99	65.592	ENSDARG00000060767	smg7	99	65.679	Danio_rerio
ENSPEMG00000011315	Smg7	100	94.604	ENSDORG00000007331	Smg7	100	94.604	Dipodomys_ordii
ENSPEMG00000011315	Smg7	97	93.750	ENSETEG00000002654	SMG7	100	93.750	Echinops_telfairi
ENSPEMG00000011315	Smg7	100	95.618	ENSEASG00005006524	SMG7	100	95.618	Equus_asinus_asinus
ENSPEMG00000011315	Smg7	100	95.530	ENSECAG00000004313	SMG7	100	95.530	Equus_caballus
ENSPEMG00000011315	Smg7	97	93.756	ENSEEUG00000002024	SMG7	94	93.756	Erinaceus_europaeus
ENSPEMG00000011315	Smg7	92	75.700	ENSELUG00000010293	smg7	99	64.356	Esox_lucius
ENSPEMG00000011315	Smg7	100	94.829	ENSFCAG00000010900	SMG7	100	95.004	Felis_catus
ENSPEMG00000011315	Smg7	98	82.228	ENSFALG00000003047	SMG7	100	82.143	Ficedula_albicollis
ENSPEMG00000011315	Smg7	99	94.844	ENSFDAG00000012121	SMG7	99	95.183	Fukomys_damarensis
ENSPEMG00000011315	Smg7	99	63.668	ENSFHEG00000011073	smg7	99	63.841	Fundulus_heteroclitus
ENSPEMG00000011315	Smg7	89	66.715	ENSGMOG00000004916	smg7	92	66.715	Gadus_morhua
ENSPEMG00000011315	Smg7	99	85.463	ENSGALG00000004667	SMG7	99	85.286	Gallus_gallus
ENSPEMG00000011315	Smg7	99	63.495	ENSGAFG00000019000	smg7	99	63.322	Gambusia_affinis
ENSPEMG00000011315	Smg7	97	64.510	ENSGACG00000001634	smg7	99	65.035	Gasterosteus_aculeatus
ENSPEMG00000011315	Smg7	100	95.300	ENSGGOG00000002342	SMG7	98	95.300	Gorilla_gorilla
ENSPEMG00000011315	Smg7	99	64.516	ENSHBUG00000003726	smg7	98	72.081	Haplochromis_burtoni
ENSPEMG00000011315	Smg7	98	94.920	ENSHGLG00000009353	SMG7	100	94.920	Heterocephalus_glaber_female
ENSPEMG00000011315	Smg7	98	93.226	ENSHGLG00100009637	-	100	93.226	Heterocephalus_glaber_male
ENSPEMG00000011315	Smg7	100	87.555	ENSHGLG00100004878	-	100	87.555	Heterocephalus_glaber_male
ENSPEMG00000011315	Smg7	99	66.579	ENSIPUG00000016997	smg7	99	66.579	Ictalurus_punctatus
ENSPEMG00000011315	Smg7	100	95.648	ENSSTOG00000000401	SMG7	100	95.648	Ictidomys_tridecemlineatus
ENSPEMG00000011315	Smg7	100	94.737	ENSJJAG00000012351	Smg7	100	94.737	Jaculus_jaculus
ENSPEMG00000011315	Smg7	90	69.500	ENSKMAG00000004900	smg7	97	69.500	Kryptolebias_marmoratus
ENSPEMG00000011315	Smg7	99	64.935	ENSLBEG00000002983	smg7	99	65.022	Labrus_bergylta
ENSPEMG00000011315	Smg7	52	62.779	ENSLBEG00000005220	-	75	63.573	Labrus_bergylta
ENSPEMG00000011315	Smg7	99	75.000	ENSLACG00000000972	SMG7	99	74.805	Latimeria_chalumnae
ENSPEMG00000011315	Smg7	99	66.973	ENSLOCG00000002010	smg7	99	66.890	Lepisosteus_oculatus
ENSPEMG00000011315	Smg7	100	95.039	ENSLAFG00000008186	SMG7	100	95.039	Loxodonta_africana
ENSPEMG00000011315	Smg7	100	95.474	ENSMFAG00000031653	SMG7	100	95.443	Macaca_fascicularis
ENSPEMG00000011315	Smg7	100	95.387	ENSMMUG00000018458	SMG7	98	95.387	Macaca_mulatta
ENSPEMG00000011315	Smg7	99	92.110	ENSMNEG00000034798	SMG7	100	91.441	Macaca_nemestrina
ENSPEMG00000011315	Smg7	100	95.387	ENSMLEG00000037170	SMG7	98	95.387	Mandrillus_leucophaeus
ENSPEMG00000011315	Smg7	88	64.000	ENSMAMG00000018733	smg7	86	62.767	Mastacembelus_armatus
ENSPEMG00000011315	Smg7	99	64.599	ENSMZEG00005015247	smg7	99	65.108	Maylandia_zebra
ENSPEMG00000011315	Smg7	99	85.071	ENSMGAG00000001561	SMG7	99	84.894	Meleagris_gallopavo
ENSPEMG00000011315	Smg7	100	97.822	ENSMAUG00000019484	Smg7	100	97.822	Mesocricetus_auratus
ENSPEMG00000011315	Smg7	100	95.387	ENSMICG00000007145	SMG7	100	95.387	Microcebus_murinus
ENSPEMG00000011315	Smg7	100	97.735	ENSMOCG00000020748	Smg7	100	97.735	Microtus_ochrogaster
ENSPEMG00000011315	Smg7	99	63.400	ENSMMOG00000001524	smg7	99	63.391	Mola_mola
ENSPEMG00000011315	Smg7	92	88.964	ENSMODG00000007139	SMG7	99	88.964	Monodelphis_domestica
ENSPEMG00000011315	Smg7	97	67.164	ENSMALG00000000061	smg7	93	67.164	Monopterus_albus
ENSPEMG00000011315	Smg7	100	97.561	MGP_CAROLIEiJ_G0014704	Smg7	100	97.561	Mus_caroli
ENSPEMG00000011315	Smg7	100	97.300	ENSMUSG00000042772	Smg7	100	97.300	Mus_musculus
ENSPEMG00000011315	Smg7	100	97.300	MGP_PahariEiJ_G0027940	Smg7	100	97.300	Mus_pahari
ENSPEMG00000011315	Smg7	100	97.387	MGP_SPRETEiJ_G0015511	Smg7	100	97.387	Mus_spretus
ENSPEMG00000011315	Smg7	98	94.652	ENSMPUG00000011732	SMG7	97	94.831	Mustela_putorius_furo
ENSPEMG00000011315	Smg7	99	94.263	ENSMLUG00000015417	SMG7	99	94.263	Myotis_lucifugus
ENSPEMG00000011315	Smg7	100	95.993	ENSNGAG00000009836	Smg7	100	95.383	Nannospalax_galili
ENSPEMG00000011315	Smg7	99	60.175	ENSNBRG00000024343	smg7	98	70.000	Neolamprologus_brichardi
ENSPEMG00000011315	Smg7	100	95.387	ENSNLEG00000018018	SMG7	98	95.387	Nomascus_leucogenys
ENSPEMG00000011315	Smg7	77	84.300	ENSMEUG00000004681	SMG7	77	84.519	Notamacropus_eugenii
ENSPEMG00000011315	Smg7	96	83.014	ENSOPRG00000013942	SMG7	96	82.740	Ochotona_princeps
ENSPEMG00000011315	Smg7	100	94.778	ENSODEG00000010390	SMG7	100	94.778	Octodon_degus
ENSPEMG00000011315	Smg7	99	63.652	ENSONIG00000000277	smg7	99	64.711	Oreochromis_niloticus
ENSPEMG00000011315	Smg7	98	90.071	ENSOANG00000000994	SMG7	100	90.337	Ornithorhynchus_anatinus
ENSPEMG00000011315	Smg7	100	88.251	ENSOCUG00000005887	SMG7	94	88.425	Oryctolagus_cuniculus
ENSPEMG00000011315	Smg7	99	62.511	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
ENSPEMG00000011315	Smg7	99	62.860	ENSORLG00020015779	smg7	70	92.105	Oryzias_latipes_hni
ENSPEMG00000011315	Smg7	99	64.402	ENSORLG00015012289	smg7	99	62.554	Oryzias_latipes_hsok
ENSPEMG00000011315	Smg7	99	62.292	ENSOMEG00000002328	smg7	99	62.375	Oryzias_melastigma
ENSPEMG00000011315	Smg7	97	94.560	ENSOGAG00000003107	SMG7	94	94.379	Otolemur_garnettii
ENSPEMG00000011315	Smg7	100	94.517	ENSOARG00000001352	SMG7	98	94.517	Ovis_aries
ENSPEMG00000011315	Smg7	99	92.110	ENSPPAG00000031619	SMG7	100	91.441	Pan_paniscus
ENSPEMG00000011315	Smg7	100	94.952	ENSPPRG00000011222	SMG7	98	95.126	Panthera_pardus
ENSPEMG00000011315	Smg7	96	94.622	ENSPTIG00000007242	SMG7	100	90.568	Panthera_tigris_altaica
ENSPEMG00000011315	Smg7	97	95.290	ENSPTRG00000001764	SMG7	100	91.441	Pan_troglodytes
ENSPEMG00000011315	Smg7	100	95.387	ENSPANG00000004520	SMG7	98	95.387	Papio_anubis
ENSPEMG00000011315	Smg7	94	70.297	ENSPKIG00000007242	smg7	99	69.500	Paramormyrops_kingsleyae
ENSPEMG00000011315	Smg7	99	90.468	ENSPSIG00000012201	SMG7	99	90.203	Pelodiscus_sinensis
ENSPEMG00000011315	Smg7	71	41.469	ENSPMGG00000021833	smg7	89	54.000	Periophthalmus_magnuspinnatus
ENSPEMG00000011315	Smg7	100	88.721	ENSPCIG00000003786	SMG7	100	90.404	Phascolarctos_cinereus
ENSPEMG00000011315	Smg7	99	62.923	ENSPFOG00000019219	smg7	99	63.119	Poecilia_formosa
ENSPEMG00000011315	Smg7	99	63.613	ENSPLAG00000001446	smg7	99	63.526	Poecilia_latipinna
ENSPEMG00000011315	Smg7	96	62.768	ENSPMEG00000005218	smg7	99	62.679	Poecilia_mexicana
ENSPEMG00000011315	Smg7	87	60.179	ENSPREG00000019039	smg7	92	59.737	Poecilia_reticulata
ENSPEMG00000011315	Smg7	99	92.199	ENSPPYG00000000427	SMG7	99	92.199	Pongo_abelii
ENSPEMG00000011315	Smg7	95	84.133	ENSPCAG00000008360	SMG7	94	84.133	Procavia_capensis
ENSPEMG00000011315	Smg7	100	95.387	ENSPCOG00000011996	SMG7	98	95.387	Propithecus_coquereli
ENSPEMG00000011315	Smg7	92	89.006	ENSPVAG00000000851	SMG7	89	89.327	Pteropus_vampyrus
ENSPEMG00000011315	Smg7	99	64.788	ENSPNYG00000007643	smg7	99	65.048	Pundamilia_nyererei
ENSPEMG00000011315	Smg7	99	66.288	ENSPNAG00000011374	smg7	98	67.677	Pygocentrus_nattereri
ENSPEMG00000011315	Smg7	100	97.215	ENSRNOG00000027962	Smg7	100	97.195	Rattus_norvegicus
ENSPEMG00000011315	Smg7	100	95.300	ENSRBIG00000036316	SMG7	98	95.300	Rhinopithecus_bieti
ENSPEMG00000011315	Smg7	100	95.300	ENSRROG00000035719	SMG7	100	95.267	Rhinopithecus_roxellana
ENSPEMG00000011315	Smg7	100	94.829	ENSSBOG00000023454	SMG7	100	94.829	Saimiri_boliviensis_boliviensis
ENSPEMG00000011315	Smg7	99	89.362	ENSSHAG00000013147	SMG7	99	89.017	Sarcophilus_harrisii
ENSPEMG00000011315	Smg7	93	75.000	ENSSFOG00015017252	smg7	99	76.842	Scleropages_formosus
ENSPEMG00000011315	Smg7	99	64.435	ENSSMAG00000006067	smg7	99	64.583	Scophthalmus_maximus
ENSPEMG00000011315	Smg7	95	71.071	ENSSDUG00000017543	smg7	99	64.144	Seriola_dumerili
ENSPEMG00000011315	Smg7	99	85.777	ENSSPUG00000002064	SMG7	99	85.601	Sphenodon_punctatus
ENSPEMG00000011315	Smg7	99	64.846	ENSSPAG00000008733	smg7	98	64.587	Stegastes_partitus
ENSPEMG00000011315	Smg7	100	94.917	ENSSSCG00000015558	SMG7	100	94.917	Sus_scrofa
ENSPEMG00000011315	Smg7	99	85.286	ENSTGUG00000003928	SMG7	100	85.198	Taeniopygia_guttata
ENSPEMG00000011315	Smg7	99	63.162	ENSTNIG00000002802	smg7	99	63.038	Tetraodon_nigroviridis
ENSPEMG00000011315	Smg7	77	94.068	ENSTBEG00000003220	SMG7	75	94.068	Tupaia_belangeri
ENSPEMG00000011315	Smg7	96	94.612	ENSTTRG00000014778	SMG7	94	94.612	Tursiops_truncatus
ENSPEMG00000011315	Smg7	97	92.465	ENSUAMG00000017473	SMG7	100	92.651	Ursus_americanus
ENSPEMG00000011315	Smg7	96	94.813	ENSUMAG00000016389	SMG7	100	94.995	Ursus_maritimus
ENSPEMG00000011315	Smg7	100	94.741	ENSVVUG00000008976	SMG7	100	94.917	Vulpes_vulpes
ENSPEMG00000011315	Smg7	99	68.668	ENSXETG00000012528	smg7	99	68.794	Xenopus_tropicalis
ENSPEMG00000011315	Smg7	99	63.636	ENSXMAG00000007123	smg7	99	63.810	Xiphophorus_maculatus