EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000012565 (Gene tree)
Gene ID: 102902996
Gene Symbol: Pabpc4l
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chrKI616767.1:561378-562490
Accession: 102902996
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000012134	RRM_5	PF13893.6	7.6e-12	1	3
ENSPEMP00000012134	RRM_5	PF13893.6	7.6e-12	2	3
ENSPEMP00000012134	RRM_5	PF13893.6	7.6e-12	3	3
ENSPEMP00000012134	RRM_1	PF00076.22	2.4e-83	1	4
ENSPEMP00000012134	RRM_1	PF00076.22	2.4e-83	2	4
ENSPEMP00000012134	RRM_1	PF00076.22	2.4e-83	3	4
ENSPEMP00000012134	RRM_1	PF00076.22	2.4e-83	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000016330	-	1113	XM_015990676	ENSPEMP00000012134	370 (aa)	XP_015846162	UPI00042ABAA6

Gene Model

Click here to download ENSPEMG00000012565's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000012565's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000012565	Pabpc4l	99	65.301	ENSPEMG00000011901	Pabpc6	62	65.301
ENSPEMG00000012565	Pabpc4l	96	38.636	ENSPEMG00000017568	Sf3b4	54	33.190
ENSPEMG00000012565	Pabpc4l	99	68.493	ENSPEMG00000023569	-	60	67.935
ENSPEMG00000012565	Pabpc4l	96	33.735	ENSPEMG00000014101	Elavl2	86	33.735
ENSPEMG00000012565	Pabpc4l	96	58.427	ENSPEMG00000000171	Pabpc5	95	58.516
ENSPEMG00000012565	Pabpc4l	97	58.889	ENSPEMG00000020671	Pabpc1l	63	58.889
ENSPEMG00000012565	Pabpc4l	98	66.667	ENSPEMG00000014998	Pabpc1	59	66.667
ENSPEMG00000012565	Pabpc4l	95	31.690	ENSPEMG00000014538	Tial1	87	30.824
ENSPEMG00000012565	Pabpc4l	92	30.208	ENSPEMG00000018087	-	50	30.319
ENSPEMG00000012565	Pabpc4l	98	56.000	ENSPEMG00000017399	-	97	58.000
ENSPEMG00000012565	Pabpc4l	66	32.911	ENSPEMG00000007877	Trnau1ap	67	30.693
ENSPEMG00000012565	Pabpc4l	95	30.112	ENSPEMG00000001090	Tia1	70	30.112
ENSPEMG00000012565	Pabpc4l	97	64.167	ENSPEMG00000013149	Pabpc2	59	64.167
ENSPEMG00000012565	Pabpc4l	99	65.041	ENSPEMG00000024193	-	60	65.041
ENSPEMG00000012565	Pabpc4l	65	37.838	ENSPEMG00000012411	Rbm3	58	33.333
ENSPEMG00000012565	Pabpc4l	98	56.000	ENSPEMG00000014159	-	97	58.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000012565	Pabpc4l	100	83.243	ENSG00000254535	PABPC4L	100	83.243	Homo_sapiens
ENSPEMG00000012565	Pabpc4l	100	82.432	ENSANAG00000017199	PABPC4L	87	82.432	Aotus_nancymaae
ENSPEMG00000012565	Pabpc4l	99	81.843	ENSBTAG00000046902	PABPC4L	99	81.843	Bos_taurus
ENSPEMG00000012565	Pabpc4l	100	82.973	ENSCJAG00000045332	PABPC4L	86	82.973	Callithrix_jacchus
ENSPEMG00000012565	Pabpc4l	99	70.652	ENSCAFG00020019182	-	54	70.652	Canis_lupus_dingo
ENSPEMG00000012565	Pabpc4l	99	81.843	ENSCHIG00000007231	PABPC4L	99	81.843	Capra_hircus
ENSPEMG00000012565	Pabpc4l	98	75.224	ENSCAPG00000000555	PABPC4L	100	75.224	Cavia_aperea
ENSPEMG00000012565	Pabpc4l	100	72.162	ENSCPOG00000033167	PABPC4L	100	72.162	Cavia_porcellus
ENSPEMG00000012565	Pabpc4l	100	82.703	ENSCCAG00000031681	PABPC4L	86	82.703	Cebus_capucinus
ENSPEMG00000012565	Pabpc4l	100	77.568	ENSCLAG00000017628	PABPC4L	100	77.568	Chinchilla_lanigera
ENSPEMG00000012565	Pabpc4l	100	81.081	ENSCANG00000037677	PABPC4L	100	81.081	Colobus_angolensis_palliatus
ENSPEMG00000012565	Pabpc4l	100	93.784	ENSCGRG00001002070	Pabpc4l	100	93.784	Cricetulus_griseus_chok1gshd
ENSPEMG00000012565	Pabpc4l	100	93.784	ENSCGRG00000020086	Pabpc4l	100	93.784	Cricetulus_griseus_crigri
ENSPEMG00000012565	Pabpc4l	100	81.351	ENSDNOG00000031077	PABPC4L	95	81.351	Dasypus_novemcinctus
ENSPEMG00000012565	Pabpc4l	99	80.217	ENSEASG00005007883	PABPC4L	99	80.217	Equus_asinus_asinus
ENSPEMG00000012565	Pabpc4l	99	80.488	ENSECAG00000031416	PABPC4L	99	80.488	Equus_caballus
ENSPEMG00000012565	Pabpc4l	99	80.488	ENSFCAG00000028270	PABPC4L	99	80.488	Felis_catus
ENSPEMG00000012565	Pabpc4l	99	75.339	ENSFDAG00000019606	PABPC4L	99	75.339	Fukomys_damarensis
ENSPEMG00000012565	Pabpc4l	100	82.703	ENSGGOG00000024991	PABPC4L	100	82.703	Gorilla_gorilla
ENSPEMG00000012565	Pabpc4l	99	77.236	ENSHGLG00000020104	PABPC4L	99	77.236	Heterocephalus_glaber_female
ENSPEMG00000012565	Pabpc4l	99	77.236	ENSHGLG00100020648	PABPC4L	99	77.236	Heterocephalus_glaber_male
ENSPEMG00000012565	Pabpc4l	100	82.480	ENSSTOG00000019472	PABPC4L	99	82.480	Ictidomys_tridecemlineatus
ENSPEMG00000012565	Pabpc4l	99	80.488	ENSJJAG00000004090	Pabpc4l	99	80.488	Jaculus_jaculus
ENSPEMG00000012565	Pabpc4l	100	94.865	ENSMAUG00000016313	Pabpc4l	100	94.865	Mesocricetus_auratus
ENSPEMG00000012565	Pabpc4l	100	82.162	ENSMICG00000029683	PABPC4L	100	82.162	Microcebus_murinus
ENSPEMG00000012565	Pabpc4l	100	94.865	ENSMOCG00000007551	Pabpc4l	100	94.865	Microtus_ochrogaster
ENSPEMG00000012565	Pabpc4l	100	88.919	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	90.000	Mus_caroli
ENSPEMG00000012565	Pabpc4l	100	89.189	ENSMUSG00000090919	Pabpc4l	100	90.000	Mus_musculus
ENSPEMG00000012565	Pabpc4l	100	89.459	MGP_PahariEiJ_G0026409	Pabpc4l	100	89.459	Mus_pahari
ENSPEMG00000012565	Pabpc4l	100	88.649	MGP_SPRETEiJ_G0025903	Pabpc4l	100	90.000	Mus_spretus
ENSPEMG00000012565	Pabpc4l	99	73.442	ENSMLUG00000008254	PABPC4L	99	73.442	Myotis_lucifugus
ENSPEMG00000012565	Pabpc4l	100	88.649	ENSNGAG00000001502	Pabpc4l	100	88.649	Nannospalax_galili
ENSPEMG00000012565	Pabpc4l	100	82.973	ENSNLEG00000019300	PABPC4L	100	82.973	Nomascus_leucogenys
ENSPEMG00000012565	Pabpc4l	100	76.216	ENSOGAG00000026166	PABPC4L	100	76.216	Otolemur_garnettii
ENSPEMG00000012565	Pabpc4l	99	83.282	ENSPPAG00000043745	PABPC4L	93	83.282	Pan_paniscus
ENSPEMG00000012565	Pabpc4l	99	80.217	ENSPPRG00000018628	PABPC4L	99	80.217	Panthera_pardus
ENSPEMG00000012565	Pabpc4l	99	80.488	ENSPTIG00000010106	PABPC4L	99	80.488	Panthera_tigris_altaica
ENSPEMG00000012565	Pabpc4l	99	83.282	ENSPTRG00000045513	-	80	83.282	Pan_troglodytes
ENSPEMG00000012565	Pabpc4l	100	82.703	ENSPCOG00000025578	PABPC4L	100	82.703	Propithecus_coquereli
ENSPEMG00000012565	Pabpc4l	100	90.270	ENSRNOG00000029749	Pabpc4l	100	90.270	Rattus_norvegicus
ENSPEMG00000012565	Pabpc4l	100	80.000	ENSRBIG00000030229	PABPC4L	100	80.000	Rhinopithecus_bieti
ENSPEMG00000012565	Pabpc4l	100	79.730	ENSRROG00000020367	PABPC4L	100	79.730	Rhinopithecus_roxellana
ENSPEMG00000012565	Pabpc4l	100	82.162	ENSSBOG00000016382	PABPC4L	100	82.162	Saimiri_boliviensis_boliviensis
ENSPEMG00000012565	Pabpc4l	99	74.797	ENSSSCG00000009067	PABPC4L	99	74.797	Sus_scrofa
ENSPEMG00000012565	Pabpc4l	99	79.404	ENSUAMG00000001289	PABPC4L	99	79.404	Ursus_americanus
ENSPEMG00000012565	Pabpc4l	99	79.404	ENSUMAG00000014887	PABPC4L	99	79.404	Ursus_maritimus
ENSPEMG00000012565	Pabpc4l	89	72.561	ENSVVUG00000011060	-	75	72.561	Vulpes_vulpes