EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000015187 (Gene tree)
Gene ID: 102928799
Gene Symbol: R3hdm1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Minus strand
Length: 92615 bases
Position: chrKI616356.1:75447-168061
Accession: 102928799
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000015795	R3H	PF01424.22	2.8e-12	1	1
ENSPEMP00000015787	R3H	PF01424.22	7.2e-12	1	1
ENSPEMP00000015777	R3H	PF01424.22	2.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000020094	-	1458	-	ENSPEMP00000015787	486 (aa)	-	-
ENSPEMT00000020084	-	3408	XM_006996283	ENSPEMP00000015777	1135 (aa)	XP_006996345	UPI00042AE2B0
ENSPEMT00000020102	-	909	-	ENSPEMP00000015795	287 (aa)	-	-
ENSPEMT00000020089	-	1155	-	ENSPEMP00000015782	385 (aa)	-	-

Gene Model

Click here to download ENSPEMG00000015187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000015187's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000015187	R3hdm1	94	55.319	ENSPEMG00000015964	R3hdm2	96	56.188
ENSPEMG00000015187	R3hdm1	86	58.486	ENSPEMG00000009709	Arpp21	88	50.130

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000015187	R3hdm1	99	95.406	ENSG00000048991	R3HDM1	99	95.406	Homo_sapiens
ENSPEMG00000015187	R3hdm1	100	64.548	ENSAPOG00000020850	r3hdm1	97	47.822	Acanthochromis_polyacanthus
ENSPEMG00000015187	R3hdm1	100	91.362	ENSAMEG00000014886	R3HDM1	100	89.349	Ailuropoda_melanoleuca
ENSPEMG00000015187	R3hdm1	90	54.911	ENSACIG00000018791	-	81	56.691	Amphilophus_citrinellus
ENSPEMG00000015187	R3hdm1	100	64.883	ENSAOCG00000005192	r3hdm1	99	47.456	Amphiprion_ocellaris
ENSPEMG00000015187	R3hdm1	100	59.727	ENSAPEG00000016108	r3hdm1	99	45.564	Amphiprion_percula
ENSPEMG00000015187	R3hdm1	100	58.904	ENSATEG00000000232	r3hdm1	99	45.037	Anabas_testudineus
ENSPEMG00000015187	R3hdm1	100	79.070	ENSAPLG00000015231	R3HDM1	100	75.528	Anas_platyrhynchos
ENSPEMG00000015187	R3hdm1	100	77.846	ENSACAG00000001676	R3HDM1	100	78.196	Anolis_carolinensis
ENSPEMG00000015187	R3hdm1	100	92.798	ENSANAG00000035334	R3HDM1	100	89.182	Aotus_nancymaae
ENSPEMG00000015187	R3hdm1	100	57.679	ENSACLG00000027282	r3hdm1	94	47.314	Astatotilapia_calliptera
ENSPEMG00000015187	R3hdm1	100	61.613	ENSAMXG00000003536	r3hdm1	100	62.326	Astyanax_mexicanus
ENSPEMG00000015187	R3hdm1	99	68.301	ENSAMXG00000012861	R3HDM1	100	70.673	Astyanax_mexicanus
ENSPEMG00000015187	R3hdm1	79	58.442	ENSAMXG00000020587	arpp21	79	58.537	Astyanax_mexicanus
ENSPEMG00000015187	R3hdm1	100	91.197	ENSBTAG00000013302	R3HDM1	100	91.285	Bos_taurus
ENSPEMG00000015187	R3hdm1	100	92.798	ENSCJAG00000011718	R3HDM1	100	88.987	Callithrix_jacchus
ENSPEMG00000015187	R3hdm1	100	91.362	ENSCAFG00000005075	R3HDM1	100	89.613	Canis_familiaris
ENSPEMG00000015187	R3hdm1	100	92.593	ENSCAFG00020016119	R3HDM1	100	92.342	Canis_lupus_dingo
ENSPEMG00000015187	R3hdm1	100	91.197	ENSCHIG00000020851	R3HDM1	100	91.285	Capra_hircus
ENSPEMG00000015187	R3hdm1	100	81.185	ENSCAPG00000013043	-	100	81.185	Cavia_aperea
ENSPEMG00000015187	R3hdm1	100	91.289	ENSCPOG00000012784	R3HDM1	100	91.561	Cavia_porcellus
ENSPEMG00000015187	R3hdm1	100	93.210	ENSCCAG00000027199	R3HDM1	100	88.908	Cebus_capucinus
ENSPEMG00000015187	R3hdm1	100	91.029	ENSCATG00000023642	R3HDM1	100	91.029	Cercocebus_atys
ENSPEMG00000015187	R3hdm1	100	93.728	ENSCLAG00000007962	R3HDM1	100	93.728	Chinchilla_lanigera
ENSPEMG00000015187	R3hdm1	100	90.941	ENSCSAG00000016356	R3HDM1	100	90.941	Chlorocebus_sabaeus
ENSPEMG00000015187	R3hdm1	88	77.559	ENSCHOG00000013638	R3HDM1	91	77.297	Choloepus_hoffmanni
ENSPEMG00000015187	R3hdm1	92	76.879	ENSCPBG00000009645	R3HDM1	100	78.628	Chrysemys_picta_bellii
ENSPEMG00000015187	R3hdm1	100	90.365	ENSCANG00000034748	R3HDM1	100	88.039	Colobus_angolensis_palliatus
ENSPEMG00000015187	R3hdm1	99	97.793	ENSCGRG00001012357	R3hdm1	97	97.793	Cricetulus_griseus_chok1gshd
ENSPEMG00000015187	R3hdm1	100	99.303	ENSCGRG00000012080	R3hdm1	100	99.303	Cricetulus_griseus_crigri
ENSPEMG00000015187	R3hdm1	100	59.184	ENSCSEG00000008944	r3hdm1	99	42.831	Cynoglossus_semilaevis
ENSPEMG00000015187	R3hdm1	100	64.214	ENSCVAG00000007582	r3hdm1	99	47.295	Cyprinodon_variegatus
ENSPEMG00000015187	R3hdm1	79	55.263	ENSDARG00000061081	arpp21	52	45.968	Danio_rerio
ENSPEMG00000015187	R3hdm1	100	85.377	ENSDNOG00000000771	R3HDM1	100	85.377	Dasypus_novemcinctus
ENSPEMG00000015187	R3hdm1	100	96.864	ENSDORG00000027689	-	100	96.864	Dipodomys_ordii
ENSPEMG00000015187	R3hdm1	100	87.043	ENSETEG00000013606	R3HDM1	100	77.905	Echinops_telfairi
ENSPEMG00000015187	R3hdm1	87	49.336	ENSEBUG00000014746	arpp21	97	41.254	Eptatretus_burgeri
ENSPEMG00000015187	R3hdm1	100	91.982	ENSEASG00005007392	R3HDM1	100	94.828	Equus_asinus_asinus
ENSPEMG00000015187	R3hdm1	100	95.819	ENSECAG00000019114	R3HDM1	100	94.828	Equus_caballus
ENSPEMG00000015187	R3hdm1	100	78.405	ENSEEUG00000012589	R3HDM1	89	83.591	Erinaceus_europaeus
ENSPEMG00000015187	R3hdm1	77	67.662	ENSELUG00000014413	r3hdm1	96	52.315	Esox_lucius
ENSPEMG00000015187	R3hdm1	83	73.518	ENSELUG00000004909	R3HDM1	99	53.117	Esox_lucius
ENSPEMG00000015187	R3hdm1	100	93.827	ENSFCAG00000027113	R3HDM1	100	95.320	Felis_catus
ENSPEMG00000015187	R3hdm1	100	78.738	ENSFALG00000013731	R3HDM1	93	69.093	Ficedula_albicollis
ENSPEMG00000015187	R3hdm1	100	94.077	ENSFDAG00000016478	R3HDM1	100	94.077	Fukomys_damarensis
ENSPEMG00000015187	R3hdm1	100	65.529	ENSFHEG00000018713	r3hdm1	99	46.728	Fundulus_heteroclitus
ENSPEMG00000015187	R3hdm1	78	71.088	ENSGMOG00000006042	-	74	67.245	Gadus_morhua
ENSPEMG00000015187	R3hdm1	100	74.394	ENSGALG00000012246	R3HDM1	99	85.574	Gallus_gallus
ENSPEMG00000015187	R3hdm1	100	60.068	ENSGAFG00000006203	r3hdm1	94	47.242	Gambusia_affinis
ENSPEMG00000015187	R3hdm1	80	72.034	ENSGACG00000014925	r3hdm1	99	48.381	Gasterosteus_aculeatus
ENSPEMG00000015187	R3hdm1	95	85.383	ENSGAGG00000007840	R3HDM1	96	82.793	Gopherus_agassizii
ENSPEMG00000015187	R3hdm1	100	95.470	ENSGGOG00000008156	R3HDM1	100	88.732	Gorilla_gorilla
ENSPEMG00000015187	R3hdm1	100	63.211	ENSHBUG00000015737	R3HDM1	90	57.634	Haplochromis_burtoni
ENSPEMG00000015187	R3hdm1	100	94.077	ENSHGLG00000015718	R3HDM1	100	94.077	Heterocephalus_glaber_female
ENSPEMG00000015187	R3hdm1	100	93.728	ENSHGLG00100003184	-	100	93.728	Heterocephalus_glaber_male
ENSPEMG00000015187	R3hdm1	100	66.432	ENSHGLG00100015374	-	100	66.344	Heterocephalus_glaber_male
ENSPEMG00000015187	R3hdm1	84	59.952	ENSHCOG00000013366	r3hdm1	88	60.750	Hippocampus_comes
ENSPEMG00000015187	R3hdm1	56	69.091	ENSHCOG00000005036	-	63	42.520	Hippocampus_comes
ENSPEMG00000015187	R3hdm1	99	69.492	ENSIPUG00000001676	R3HDM1	99	65.072	Ictalurus_punctatus
ENSPEMG00000015187	R3hdm1	91	62.198	ENSIPUG00000013629	r3hdm1	95	68.536	Ictalurus_punctatus
ENSPEMG00000015187	R3hdm1	100	94.774	ENSSTOG00000007572	R3HDM1	100	94.774	Ictidomys_tridecemlineatus
ENSPEMG00000015187	R3hdm1	100	95.122	ENSJJAG00000018208	-	100	95.122	Jaculus_jaculus
ENSPEMG00000015187	R3hdm1	56	75.439	ENSKMAG00000013373	-	86	75.439	Kryptolebias_marmoratus
ENSPEMG00000015187	R3hdm1	100	58.020	ENSLBEG00000027981	-	94	60.364	Labrus_bergylta
ENSPEMG00000015187	R3hdm1	100	74.675	ENSLACG00000005334	R3HDM1	99	72.338	Latimeria_chalumnae
ENSPEMG00000015187	R3hdm1	99	72.368	ENSLOCG00000001641	r3hdm1	100	66.091	Lepisosteus_oculatus
ENSPEMG00000015187	R3hdm1	100	91.630	ENSLAFG00000009065	R3HDM1	100	91.630	Loxodonta_africana
ENSPEMG00000015187	R3hdm1	100	91.030	ENSMFAG00000030331	R3HDM1	100	95.320	Macaca_fascicularis
ENSPEMG00000015187	R3hdm1	100	91.030	ENSMMUG00000009844	R3HDM1	100	87.555	Macaca_mulatta
ENSPEMG00000015187	R3hdm1	100	91.030	ENSMNEG00000027793	R3HDM1	100	95.320	Macaca_nemestrina
ENSPEMG00000015187	R3hdm1	100	91.030	ENSMLEG00000043189	R3HDM1	100	88.644	Mandrillus_leucophaeus
ENSPEMG00000015187	R3hdm1	100	65.188	ENSMAMG00000004532	r3hdm1	99	47.286	Mastacembelus_armatus
ENSPEMG00000015187	R3hdm1	100	62.876	ENSMZEG00005003157	r3hdm1	99	47.261	Maylandia_zebra
ENSPEMG00000015187	R3hdm1	100	79.070	ENSMGAG00000012461	R3HDM1	100	74.148	Meleagris_gallopavo
ENSPEMG00000015187	R3hdm1	100	99.652	ENSMAUG00000010315	R3hdm1	100	99.652	Mesocricetus_auratus
ENSPEMG00000015187	R3hdm1	100	93.827	ENSMICG00000005900	-	100	88.137	Microcebus_murinus
ENSPEMG00000015187	R3hdm1	100	84.669	ENSMICG00000042655	-	100	84.729	Microcebus_murinus
ENSPEMG00000015187	R3hdm1	100	99.303	ENSMOCG00000019833	-	100	99.303	Microtus_ochrogaster
ENSPEMG00000015187	R3hdm1	100	81.090	ENSMODG00000000923	R3HDM1	97	78.497	Monodelphis_domestica
ENSPEMG00000015187	R3hdm1	100	65.306	ENSMALG00000009000	r3hdm1	100	45.652	Monopterus_albus
ENSPEMG00000015187	R3hdm1	100	98.606	MGP_CAROLIEiJ_G0014543	R3hdm1	100	98.606	Mus_caroli
ENSPEMG00000015187	R3hdm1	100	98.606	ENSMUSG00000056211	R3hdm1	100	98.606	Mus_musculus
ENSPEMG00000015187	R3hdm1	100	98.606	MGP_PahariEiJ_G0027779	R3hdm1	100	98.606	Mus_pahari
ENSPEMG00000015187	R3hdm1	100	98.606	MGP_SPRETEiJ_G0015350	R3hdm1	100	98.606	Mus_spretus
ENSPEMG00000015187	R3hdm1	100	91.362	ENSMPUG00000002412	R3HDM1	100	89.251	Mustela_putorius_furo
ENSPEMG00000015187	R3hdm1	100	90.698	ENSMLUG00000013824	R3HDM1	100	88.060	Myotis_lucifugus
ENSPEMG00000015187	R3hdm1	100	96.167	ENSNGAG00000001313	-	100	96.167	Nannospalax_galili
ENSPEMG00000015187	R3hdm1	100	90.365	ENSNLEG00000008622	R3HDM1	100	88.644	Nomascus_leucogenys
ENSPEMG00000015187	R3hdm1	85	73.253	ENSMEUG00000011784	R3HDM1	100	68.571	Notamacropus_eugenii
ENSPEMG00000015187	R3hdm1	100	94.774	ENSODEG00000008607	R3HDM1	100	94.774	Octodon_degus
ENSPEMG00000015187	R3hdm1	80	71.008	ENSONIG00000012017	r3hdm1	98	46.243	Oreochromis_niloticus
ENSPEMG00000015187	R3hdm1	100	85.714	ENSOANG00000007987	R3HDM1	100	77.914	Ornithorhynchus_anatinus
ENSPEMG00000015187	R3hdm1	100	90.365	ENSOCUG00000017366	R3HDM1	98	87.414	Oryctolagus_cuniculus
ENSPEMG00000015187	R3hdm1	100	64.846	ENSORLG00000004297	r3hdm1	99	46.748	Oryzias_latipes
ENSPEMG00000015187	R3hdm1	100	64.846	ENSORLG00020019252	-	93	60.048	Oryzias_latipes_hni
ENSPEMG00000015187	R3hdm1	100	64.846	ENSORLG00015017355	r3hdm1	99	46.887	Oryzias_latipes_hsok
ENSPEMG00000015187	R3hdm1	100	63.279	ENSOMEG00000003882	-	94	58.509	Oryzias_melastigma
ENSPEMG00000015187	R3hdm1	100	90.365	ENSOGAG00000003136	R3HDM1	100	88.546	Otolemur_garnettii
ENSPEMG00000015187	R3hdm1	100	90.365	ENSOARG00000010788	R3HDM1	100	88.370	Ovis_aries
ENSPEMG00000015187	R3hdm1	100	91.030	ENSPPAG00000027858	R3HDM1	100	88.840	Pan_paniscus
ENSPEMG00000015187	R3hdm1	100	94.033	ENSPPRG00000002626	R3HDM1	100	89.251	Panthera_pardus
ENSPEMG00000015187	R3hdm1	100	94.033	ENSPTIG00000016581	R3HDM1	100	88.987	Panthera_tigris_altaica
ENSPEMG00000015187	R3hdm1	100	91.030	ENSPTRG00000012494	R3HDM1	100	87.786	Pan_troglodytes
ENSPEMG00000015187	R3hdm1	100	91.030	ENSPANG00000026448	R3HDM1	100	88.644	Papio_anubis
ENSPEMG00000015187	R3hdm1	97	66.197	ENSPKIG00000004328	r3hdm1	91	74.921	Paramormyrops_kingsleyae
ENSPEMG00000015187	R3hdm1	100	65.517	ENSPKIG00000011224	R3HDM1	90	63.017	Paramormyrops_kingsleyae
ENSPEMG00000015187	R3hdm1	100	79.402	ENSPSIG00000012915	R3HDM1	100	74.934	Pelodiscus_sinensis
ENSPEMG00000015187	R3hdm1	82	55.924	ENSPMGG00000011264	-	91	54.691	Periophthalmus_magnuspinnatus
ENSPEMG00000015187	R3hdm1	80	63.415	ENSPMAG00000003369	-	98	43.445	Petromyzon_marinus
ENSPEMG00000015187	R3hdm1	100	89.619	ENSPCIG00000002491	R3HDM1	100	88.480	Phascolarctos_cinereus
ENSPEMG00000015187	R3hdm1	100	63.245	ENSPFOG00000015036	r3hdm1	99	47.086	Poecilia_formosa
ENSPEMG00000015187	R3hdm1	100	58.446	ENSPLAG00000018042	r3hdm1	94	46.826	Poecilia_latipinna
ENSPEMG00000015187	R3hdm1	100	58.446	ENSPMEG00000023947	r3hdm1	94	47.083	Poecilia_mexicana
ENSPEMG00000015187	R3hdm1	100	64.189	ENSPREG00000007902	r3hdm1	88	61.758	Poecilia_reticulata
ENSPEMG00000015187	R3hdm1	100	87.775	ENSPPYG00000012815	R3HDM1	100	86.515	Pongo_abelii
ENSPEMG00000015187	R3hdm1	100	87.708	ENSPCAG00000006208	R3HDM1	100	76.916	Procavia_capensis
ENSPEMG00000015187	R3hdm1	100	88.066	ENSPCOG00000012698	R3HDM1	100	86.555	Propithecus_coquereli
ENSPEMG00000015187	R3hdm1	100	81.395	ENSPVAG00000006098	R3HDM1	100	78.515	Pteropus_vampyrus
ENSPEMG00000015187	R3hdm1	100	62.876	ENSPNYG00000008701	-	97	59.102	Pundamilia_nyererei
ENSPEMG00000015187	R3hdm1	93	63.084	ENSPNAG00000013952	r3hdm1	100	62.998	Pygocentrus_nattereri
ENSPEMG00000015187	R3hdm1	79	56.579	ENSPNAG00000004162	arpp21	89	37.255	Pygocentrus_nattereri
ENSPEMG00000015187	R3hdm1	76	75.641	ENSPNAG00000005436	R3HDM1	99	75.563	Pygocentrus_nattereri
ENSPEMG00000015187	R3hdm1	100	95.771	ENSRNOG00000004099	R3hdm1	100	95.771	Rattus_norvegicus
ENSPEMG00000015187	R3hdm1	100	86.711	ENSRBIG00000033317	R3HDM1	100	97.048	Rhinopithecus_bieti
ENSPEMG00000015187	R3hdm1	100	91.030	ENSRROG00000034534	R3HDM1	100	87.775	Rhinopithecus_roxellana
ENSPEMG00000015187	R3hdm1	100	92.593	ENSSBOG00000020389	R3HDM1	100	88.820	Saimiri_boliviensis_boliviensis
ENSPEMG00000015187	R3hdm1	100	85.762	ENSSHAG00000016999	R3HDM1	100	79.947	Sarcophilus_harrisii
ENSPEMG00000015187	R3hdm1	100	65.798	ENSSFOG00015019851	-	99	56.857	Scleropages_formosus
ENSPEMG00000015187	R3hdm1	100	69.863	ENSSFOG00015014134	r3hdm1	100	69.417	Scleropages_formosus
ENSPEMG00000015187	R3hdm1	100	62.069	ENSSMAG00000001669	r3hdm1	99	42.774	Scophthalmus_maximus
ENSPEMG00000015187	R3hdm1	100	64.626	ENSSDUG00000010749	r3hdm1	99	45.879	Seriola_dumerili
ENSPEMG00000015187	R3hdm1	100	63.333	ENSSLDG00000004499	r3hdm1	99	45.690	Seriola_lalandi_dorsalis
ENSPEMG00000015187	R3hdm1	100	77.409	ENSSARG00000000352	-	69	81.728	Sorex_araneus
ENSPEMG00000015187	R3hdm1	100	80.464	ENSSPUG00000004167	R3HDM1	100	77.349	Sphenodon_punctatus
ENSPEMG00000015187	R3hdm1	100	65.870	ENSSPAG00000004648	r3hdm1	99	47.419	Stegastes_partitus
ENSPEMG00000015187	R3hdm1	100	95.122	ENSSSCG00000015692	R3HDM1	100	92.077	Sus_scrofa
ENSPEMG00000015187	R3hdm1	100	78.405	ENSTGUG00000011750	R3HDM1	100	70.465	Taeniopygia_guttata
ENSPEMG00000015187	R3hdm1	89	60.000	ENSTRUG00000011654	r3hdm1	93	46.495	Takifugu_rubripes
ENSPEMG00000015187	R3hdm1	89	65.926	ENSTNIG00000010362	r3hdm1	99	44.163	Tetraodon_nigroviridis
ENSPEMG00000015187	R3hdm1	100	83.172	ENSTTRG00000003935	R3HDM1	100	81.946	Tursiops_truncatus
ENSPEMG00000015187	R3hdm1	100	91.362	ENSUAMG00000024806	R3HDM1	99	91.513	Ursus_americanus
ENSPEMG00000015187	R3hdm1	100	86.411	ENSUMAG00000005552	R3HDM1	100	85.714	Ursus_maritimus
ENSPEMG00000015187	R3hdm1	93	91.228	ENSVPAG00000007333	R3HDM1	93	91.228	Vicugna_pacos
ENSPEMG00000015187	R3hdm1	100	95.470	ENSVVUG00000006457	R3HDM1	100	92.335	Vulpes_vulpes
ENSPEMG00000015187	R3hdm1	86	81.235	ENSXETG00000019330	r3hdm1	100	63.654	Xenopus_tropicalis
ENSPEMG00000015187	R3hdm1	83	61.137	ENSXCOG00000017448	r3hdm1	94	47.747	Xiphophorus_couchianus
ENSPEMG00000015187	R3hdm1	100	64.883	ENSXMAG00000007885	r3hdm1	99	46.895	Xiphophorus_maculatus