EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000015214 (Gene tree)
Gene ID: 102919232
Gene Symbol: Pspc1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 63638 bases
Position: chrKI615982.1:294004-357641
Accession: 102919232
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000015768	RRM_1	PF00076.22	2.7e-32	1	2
ENSPEMP00000015768	RRM_1	PF00076.22	2.7e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000020074	-	2197	XM_006993458	ENSPEMP00000015768	522 (aa)	XP_006993520	UPI00042ADA79

Gene Model

Click here to download ENSPEMG00000015214's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000015214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000015214	Pspc1	91	59.072	ENSPEMG00000011150	Nono	83	66.071
ENSPEMG00000015214	Pspc1	91	57.971	ENSPEMG00000009794	Sfpq	78	66.580

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000015214	Pspc1	100	97.706	ENSG00000121390	PSPC1	100	97.706	Homo_sapiens
ENSPEMG00000015214	Pspc1	90	69.815	ENSAPOG00000015946	pspc1	81	72.477	Acanthochromis_polyacanthus
ENSPEMG00000015214	Pspc1	100	97.323	ENSAMEG00000017420	PSPC1	100	97.323	Ailuropoda_melanoleuca
ENSPEMG00000015214	Pspc1	88	61.783	ENSACIG00000018695	pspc1	87	59.236	Amphilophus_citrinellus
ENSPEMG00000015214	Pspc1	90	68.789	ENSAOCG00000005279	pspc1	81	72.018	Amphiprion_ocellaris
ENSPEMG00000015214	Pspc1	90	69.874	ENSAPEG00000015927	pspc1	81	72.018	Amphiprion_percula
ENSPEMG00000015214	Pspc1	88	57.962	ENSATEG00000004878	pspc1	76	61.893	Anabas_testudineus
ENSPEMG00000015214	Pspc1	89	60.944	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSPEMG00000015214	Pspc1	77	93.317	ENSAPLG00000006246	PSPC1	100	93.317	Anas_platyrhynchos
ENSPEMG00000015214	Pspc1	89	53.066	ENSACAG00000013307	-	56	65.027	Anolis_carolinensis
ENSPEMG00000015214	Pspc1	99	83.117	ENSACAG00000002093	PSPC1	99	84.952	Anolis_carolinensis
ENSPEMG00000015214	Pspc1	100	97.897	ENSANAG00000000059	PSPC1	100	97.897	Aotus_nancymaae
ENSPEMG00000015214	Pspc1	99	56.852	ENSACLG00000027220	pspc1	100	53.775	Astatotilapia_calliptera
ENSPEMG00000015214	Pspc1	99	63.736	ENSAMXG00000036881	pspc1	82	71.556	Astyanax_mexicanus
ENSPEMG00000015214	Pspc1	100	95.411	ENSBTAG00000003934	PSPC1	100	94.837	Bos_taurus
ENSPEMG00000015214	Pspc1	100	97.897	ENSCJAG00000004554	PSPC1	100	97.897	Callithrix_jacchus
ENSPEMG00000015214	Pspc1	100	97.514	ENSCAFG00020002009	PSPC1	100	97.514	Canis_lupus_dingo
ENSPEMG00000015214	Pspc1	100	95.411	ENSCHIG00000016708	PSPC1	100	94.837	Capra_hircus
ENSPEMG00000015214	Pspc1	80	87.915	ENSTSYG00000032882	PSPC1	93	85.273	Carlito_syrichta
ENSPEMG00000015214	Pspc1	100	96.367	ENSCPOG00000000395	PSPC1	100	96.367	Cavia_porcellus
ENSPEMG00000015214	Pspc1	100	97.897	ENSCCAG00000033498	PSPC1	100	97.897	Cebus_capucinus
ENSPEMG00000015214	Pspc1	100	97.323	ENSCATG00000036434	PSPC1	100	97.323	Cercocebus_atys
ENSPEMG00000015214	Pspc1	88	87.689	ENSCLAG00000005241	PSPC1	99	87.689	Chinchilla_lanigera
ENSPEMG00000015214	Pspc1	100	90.822	ENSCHOG00000008913	PSPC1	100	90.631	Choloepus_hoffmanni
ENSPEMG00000015214	Pspc1	99	87.048	ENSCPBG00000020859	PSPC1	99	87.452	Chrysemys_picta_bellii
ENSPEMG00000015214	Pspc1	59	58.766	ENSCSAVG00000003533	-	58	58.632	Ciona_savignyi
ENSPEMG00000015214	Pspc1	78	85.185	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSPEMG00000015214	Pspc1	100	99.425	ENSCGRG00001018368	Pspc1	100	99.425	Cricetulus_griseus_chok1gshd
ENSPEMG00000015214	Pspc1	100	99.425	ENSCGRG00000011724	Pspc1	100	99.425	Cricetulus_griseus_crigri
ENSPEMG00000015214	Pspc1	87	66.091	ENSCVAG00000007679	-	83	66.295	Cyprinodon_variegatus
ENSPEMG00000015214	Pspc1	99	66.916	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSPEMG00000015214	Pspc1	100	96.176	ENSDNOG00000011078	PSPC1	100	96.367	Dasypus_novemcinctus
ENSPEMG00000015214	Pspc1	100	94.837	ENSDORG00000016050	Pspc1	100	94.837	Dipodomys_ordii
ENSPEMG00000015214	Pspc1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSPEMG00000015214	Pspc1	58	46.341	ENSEBUG00000010133	pspc1	78	48.822	Eptatretus_burgeri
ENSPEMG00000015214	Pspc1	88	59.298	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSPEMG00000015214	Pspc1	100	97.126	ENSEASG00005000119	PSPC1	100	97.126	Equus_asinus_asinus
ENSPEMG00000015214	Pspc1	100	97.126	ENSECAG00000017286	PSPC1	100	97.126	Equus_caballus
ENSPEMG00000015214	Pspc1	73	96.721	ENSEEUG00000011288	-	88	82.298	Erinaceus_europaeus
ENSPEMG00000015214	Pspc1	99	65.498	ENSELUG00000003746	pspc1	94	71.939	Esox_lucius
ENSPEMG00000015214	Pspc1	100	97.514	ENSFCAG00000027841	PSPC1	100	97.514	Felis_catus
ENSPEMG00000015214	Pspc1	99	87.763	ENSFALG00000008750	PSPC1	99	87.763	Ficedula_albicollis
ENSPEMG00000015214	Pspc1	100	93.870	ENSFDAG00000002617	PSPC1	100	93.870	Fukomys_damarensis
ENSPEMG00000015214	Pspc1	88	66.595	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSPEMG00000015214	Pspc1	99	87.072	ENSGALG00000017142	PSPC1	99	88.100	Gallus_gallus
ENSPEMG00000015214	Pspc1	66	74.785	ENSGAFG00000006327	pspc1	72	74.785	Gambusia_affinis
ENSPEMG00000015214	Pspc1	88	65.517	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSPEMG00000015214	Pspc1	92	59.053	ENSGAGG00000017325	-	58	66.580	Gopherus_agassizii
ENSPEMG00000015214	Pspc1	99	85.985	ENSGAGG00000019164	PSPC1	99	87.452	Gopherus_agassizii
ENSPEMG00000015214	Pspc1	100	97.514	ENSGGOG00000003414	PSPC1	100	97.514	Gorilla_gorilla
ENSPEMG00000015214	Pspc1	99	64.007	ENSHBUG00000001139	pspc1	100	62.894	Haplochromis_burtoni
ENSPEMG00000015214	Pspc1	100	95.985	ENSHGLG00000018811	PSPC1	100	95.985	Heterocephalus_glaber_female
ENSPEMG00000015214	Pspc1	67	92.264	ENSHGLG00100007962	PSPC1	100	92.264	Heterocephalus_glaber_male
ENSPEMG00000015214	Pspc1	73	70.496	ENSHCOG00000013251	pspc1	83	69.786	Hippocampus_comes
ENSPEMG00000015214	Pspc1	99	67.963	ENSIPUG00000013192	pspc1	91	72.727	Ictalurus_punctatus
ENSPEMG00000015214	Pspc1	100	97.897	ENSSTOG00000026833	PSPC1	100	97.897	Ictidomys_tridecemlineatus
ENSPEMG00000015214	Pspc1	100	97.701	ENSJJAG00000018334	Pspc1	100	97.701	Jaculus_jaculus
ENSPEMG00000015214	Pspc1	88	55.292	ENSKMAG00000013525	-	91	50.810	Kryptolebias_marmoratus
ENSPEMG00000015214	Pspc1	96	63.916	ENSLBEG00000004474	pspc1	72	75.510	Labrus_bergylta
ENSPEMG00000015214	Pspc1	99	76.866	ENSLACG00000010762	PSPC1	99	77.256	Latimeria_chalumnae
ENSPEMG00000015214	Pspc1	88	84.382	ENSLOCG00000010832	pspc1	91	84.382	Lepisosteus_oculatus
ENSPEMG00000015214	Pspc1	100	96.360	ENSLAFG00000010968	PSPC1	100	96.360	Loxodonta_africana
ENSPEMG00000015214	Pspc1	100	97.323	ENSMFAG00000032728	PSPC1	100	97.323	Macaca_fascicularis
ENSPEMG00000015214	Pspc1	100	97.323	ENSMMUG00000020262	PSPC1	100	97.323	Macaca_mulatta
ENSPEMG00000015214	Pspc1	100	97.323	ENSMNEG00000027401	PSPC1	100	97.323	Macaca_nemestrina
ENSPEMG00000015214	Pspc1	100	98.747	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSPEMG00000015214	Pspc1	88	67.216	ENSMAMG00000004333	pspc1	77	71.395	Mastacembelus_armatus
ENSPEMG00000015214	Pspc1	99	56.852	ENSMZEG00005005726	pspc1	100	53.775	Maylandia_zebra
ENSPEMG00000015214	Pspc1	78	93.103	ENSMGAG00000015134	PSPC1	100	93.103	Meleagris_gallopavo
ENSPEMG00000015214	Pspc1	88	93.926	ENSMAUG00000021067	Pspc1	99	93.926	Mesocricetus_auratus
ENSPEMG00000015214	Pspc1	100	97.318	ENSMICG00000013970	PSPC1	100	97.318	Microcebus_murinus
ENSPEMG00000015214	Pspc1	100	99.234	ENSMOCG00000006060	Pspc1	100	99.234	Microtus_ochrogaster
ENSPEMG00000015214	Pspc1	90	44.158	ENSMMOG00000004352	pspc1	59	52.083	Mola_mola
ENSPEMG00000015214	Pspc1	93	95.876	ENSMODG00000008029	PSPC1	78	95.876	Monodelphis_domestica
ENSPEMG00000015214	Pspc1	88	69.313	ENSMALG00000008914	pspc1	81	70.794	Monopterus_albus
ENSPEMG00000015214	Pspc1	100	99.235	MGP_CAROLIEiJ_G0019341	Pspc1	100	99.235	Mus_caroli
ENSPEMG00000015214	Pspc1	100	99.426	ENSMUSG00000021938	Pspc1	100	99.426	Mus_musculus
ENSPEMG00000015214	Pspc1	100	99.235	MGP_PahariEiJ_G0030359	Pspc1	100	99.235	Mus_pahari
ENSPEMG00000015214	Pspc1	100	99.426	MGP_SPRETEiJ_G0020232	Pspc1	100	99.426	Mus_spretus
ENSPEMG00000015214	Pspc1	100	97.132	ENSMPUG00000013347	PSPC1	100	97.132	Mustela_putorius_furo
ENSPEMG00000015214	Pspc1	100	96.198	ENSMLUG00000017663	PSPC1	100	96.198	Myotis_lucifugus
ENSPEMG00000015214	Pspc1	100	98.276	ENSNGAG00000011271	Pspc1	100	98.276	Nannospalax_galili
ENSPEMG00000015214	Pspc1	74	63.591	ENSNBRG00000014059	pspc1	92	60.345	Neolamprologus_brichardi
ENSPEMG00000015214	Pspc1	100	97.706	ENSNLEG00000001294	PSPC1	100	97.706	Nomascus_leucogenys
ENSPEMG00000015214	Pspc1	84	95.312	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSPEMG00000015214	Pspc1	100	83.969	ENSODEG00000019012	-	100	85.066	Octodon_degus
ENSPEMG00000015214	Pspc1	100	84.704	ENSODEG00000007817	-	100	81.285	Octodon_degus
ENSPEMG00000015214	Pspc1	99	64.074	ENSONIG00000012010	pspc1	99	62.385	Oreochromis_niloticus
ENSPEMG00000015214	Pspc1	76	97.243	ENSOANG00000009017	-	100	97.243	Ornithorhynchus_anatinus
ENSPEMG00000015214	Pspc1	99	66.157	ENSOANG00000011381	-	99	63.740	Ornithorhynchus_anatinus
ENSPEMG00000015214	Pspc1	100	97.706	ENSOCUG00000006153	PSPC1	100	97.706	Oryctolagus_cuniculus
ENSPEMG00000015214	Pspc1	88	69.787	ENSORLG00000004232	-	87	63.975	Oryzias_latipes
ENSPEMG00000015214	Pspc1	88	69.362	ENSORLG00020000578	PSPC1	92	63.095	Oryzias_latipes_hni
ENSPEMG00000015214	Pspc1	88	70.213	ENSORLG00015017480	pspc1	77	71.602	Oryzias_latipes_hsok
ENSPEMG00000015214	Pspc1	100	98.088	ENSOGAG00000012643	PSPC1	100	98.088	Otolemur_garnettii
ENSPEMG00000015214	Pspc1	100	91.031	ENSOARG00000014163	PSPC1	100	91.031	Ovis_aries
ENSPEMG00000015214	Pspc1	89	92.258	ENSPPAG00000009836	PSPC1	96	97.345	Pan_paniscus
ENSPEMG00000015214	Pspc1	100	97.514	ENSPPRG00000008833	PSPC1	100	97.514	Panthera_pardus
ENSPEMG00000015214	Pspc1	100	82.375	ENSPTIG00000016917	PSPC1	100	82.375	Panthera_tigris_altaica
ENSPEMG00000015214	Pspc1	98	96.109	ENSPTRG00000005677	PSPC1	99	97.531	Pan_troglodytes
ENSPEMG00000015214	Pspc1	100	97.514	ENSPANG00000001992	PSPC1	100	97.514	Papio_anubis
ENSPEMG00000015214	Pspc1	82	78.322	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSPEMG00000015214	Pspc1	99	86.415	ENSPSIG00000005168	PSPC1	99	87.091	Pelodiscus_sinensis
ENSPEMG00000015214	Pspc1	59	70.064	ENSPMGG00000015135	pspc1	86	69.968	Periophthalmus_magnuspinnatus
ENSPEMG00000015214	Pspc1	99	96.360	ENSPCIG00000017680	PSPC1	100	96.360	Phascolarctos_cinereus
ENSPEMG00000015214	Pspc1	92	67.004	ENSPFOG00000003362	pspc1	93	65.517	Poecilia_formosa
ENSPEMG00000015214	Pspc1	70	64.770	ENSPLAG00000004407	-	53	60.367	Poecilia_latipinna
ENSPEMG00000015214	Pspc1	92	67.004	ENSPLAG00000011540	pspc1	92	65.517	Poecilia_latipinna
ENSPEMG00000015214	Pspc1	70	64.770	ENSPMEG00000001025	-	53	60.367	Poecilia_mexicana
ENSPEMG00000015214	Pspc1	92	66.599	ENSPMEG00000008322	pspc1	92	65.112	Poecilia_mexicana
ENSPEMG00000015214	Pspc1	92	67.004	ENSPREG00000007786	pspc1	92	65.517	Poecilia_reticulata
ENSPEMG00000015214	Pspc1	100	97.318	ENSPPYG00000005186	PSPC1	100	97.318	Pongo_abelii
ENSPEMG00000015214	Pspc1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSPEMG00000015214	Pspc1	100	93.690	ENSPCOG00000014364	PSPC1	100	93.690	Propithecus_coquereli
ENSPEMG00000015214	Pspc1	100	93.103	ENSPVAG00000005036	PSPC1	100	94.061	Pteropus_vampyrus
ENSPEMG00000015214	Pspc1	99	56.852	ENSPNYG00000008893	pspc1	100	53.591	Pundamilia_nyererei
ENSPEMG00000015214	Pspc1	99	67.351	ENSPNAG00000016511	pspc1	92	71.458	Pygocentrus_nattereri
ENSPEMG00000015214	Pspc1	100	99.425	ENSRNOG00000020782	Pspc1	100	99.425	Rattus_norvegicus
ENSPEMG00000015214	Pspc1	93	97.741	ENSRBIG00000036057	PSPC1	100	97.741	Rhinopithecus_bieti
ENSPEMG00000015214	Pspc1	100	97.514	ENSRROG00000036334	PSPC1	100	97.514	Rhinopithecus_roxellana
ENSPEMG00000015214	Pspc1	79	88.136	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSPEMG00000015214	Pspc1	100	91.048	ENSSHAG00000004696	PSPC1	100	91.048	Sarcophilus_harrisii
ENSPEMG00000015214	Pspc1	82	79.157	ENSSFOG00015001395	pspc1	90	78.372	Scleropages_formosus
ENSPEMG00000015214	Pspc1	88	66.736	ENSSMAG00000001761	pspc1	86	74.286	Scophthalmus_maximus
ENSPEMG00000015214	Pspc1	88	68.763	ENSSDUG00000010651	pspc1	76	74.005	Seriola_dumerili
ENSPEMG00000015214	Pspc1	88	64.286	ENSSLDG00000004284	pspc1	81	61.663	Seriola_lalandi_dorsalis
ENSPEMG00000015214	Pspc1	100	89.272	ENSSARG00000000888	PSPC1	100	89.655	Sorex_araneus
ENSPEMG00000015214	Pspc1	99	74.719	ENSSPUG00000008550	PSPC1	99	75.432	Sphenodon_punctatus
ENSPEMG00000015214	Pspc1	90	53.571	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSPEMG00000015214	Pspc1	90	68.081	ENSSPAG00000001921	pspc1	82	69.978	Stegastes_partitus
ENSPEMG00000015214	Pspc1	100	96.374	ENSSSCG00000009569	PSPC1	100	96.374	Sus_scrofa
ENSPEMG00000015214	Pspc1	89	94.218	ENSTGUG00000011295	PSPC1	100	94.218	Taeniopygia_guttata
ENSPEMG00000015214	Pspc1	88	63.270	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSPEMG00000015214	Pspc1	88	64.807	ENSTNIG00000010358	pspc1	84	66.271	Tetraodon_nigroviridis
ENSPEMG00000015214	Pspc1	100	75.717	ENSTBEG00000002361	PSPC1	100	76.054	Tupaia_belangeri
ENSPEMG00000015214	Pspc1	100	96.169	ENSTTRG00000003343	PSPC1	100	96.169	Tursiops_truncatus
ENSPEMG00000015214	Pspc1	67	97.151	ENSUAMG00000012309	PSPC1	100	97.151	Ursus_americanus
ENSPEMG00000015214	Pspc1	93	97.536	ENSUMAG00000013993	PSPC1	100	97.536	Ursus_maritimus
ENSPEMG00000015214	Pspc1	76	98.496	ENSVPAG00000010029	PSPC1	100	98.496	Vicugna_pacos
ENSPEMG00000015214	Pspc1	100	97.514	ENSVVUG00000006414	PSPC1	100	97.668	Vulpes_vulpes
ENSPEMG00000015214	Pspc1	66	73.926	ENSXCOG00000017438	pspc1	83	73.926	Xiphophorus_couchianus
ENSPEMG00000015214	Pspc1	66	74.212	ENSXMAG00000007929	pspc1	83	74.212	Xiphophorus_maculatus