EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000015939 (Gene tree)
Gene ID: 102925235
Gene Symbol: Chd1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 80057 bases
Position: chrKI615386.1:6444526-6524582
Accession: 102925235
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000016852	ResIII	PF04851.15	3.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000021166	-	6562	XM_006975933	ENSPEMP00000016852	1705 (aa)	XP_006975995	UPI00042AD3B3

Gene Model

Click here to download ENSPEMG00000015939's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000015939's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000015939	Chd1	95	57.644	ENSPEMG00000019507	Chd2	88	60.977

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000015939	Chd1	100	95.911	ENSG00000153922	CHD1	100	95.911	Homo_sapiens
ENSPEMG00000015939	Chd1	67	82.195	ENSAPOG00000005764	chd1	97	82.537	Acanthochromis_polyacanthus
ENSPEMG00000015939	Chd1	88	76.355	ENSAOCG00000023105	chd1	92	77.622	Amphiprion_ocellaris
ENSPEMG00000015939	Chd1	88	77.546	ENSAPEG00000013544	chd1	92	78.838	Amphiprion_percula
ENSPEMG00000015939	Chd1	71	82.756	ENSAMXG00000010843	chd1	91	83.516	Astyanax_mexicanus
ENSPEMG00000015939	Chd1	100	95.858	ENSCATG00000032035	CHD1	100	95.858	Cercocebus_atys
ENSPEMG00000015939	Chd1	100	95.683	ENSCSAG00000015339	CHD1	100	95.683	Chlorocebus_sabaeus
ENSPEMG00000015939	Chd1	54	88.565	ENSCPBG00000015831	CHD1	99	83.554	Chrysemys_picta_bellii
ENSPEMG00000015939	Chd1	100	93.579	ENSCANG00000036916	CHD1	100	93.637	Colobus_angolensis_palliatus
ENSPEMG00000015939	Chd1	100	98.305	ENSCGRG00001023943	Chd1	100	98.305	Cricetulus_griseus_chok1gshd
ENSPEMG00000015939	Chd1	100	98.305	ENSCGRG00000008652	Chd1	100	98.305	Cricetulus_griseus_crigri
ENSPEMG00000015939	Chd1	88	75.293	ENSCSEG00000009553	chd1	92	76.490	Cynoglossus_semilaevis
ENSPEMG00000015939	Chd1	91	88.210	ENSEASG00005016110	CHD1	99	96.275	Equus_asinus_asinus
ENSPEMG00000015939	Chd1	89	77.518	ENSELUG00000017677	chd1	93	77.405	Esox_lucius
ENSPEMG00000015939	Chd1	72	80.571	ENSFHEG00000021164	chd1	89	80.571	Fundulus_heteroclitus
ENSPEMG00000015939	Chd1	95	77.735	ENSGMOG00000001537	chd1	100	65.622	Gadus_morhua
ENSPEMG00000015939	Chd1	91	88.839	ENSGALG00000031327	-	96	89.031	Gallus_gallus
ENSPEMG00000015939	Chd1	83	81.763	ENSGAFG00000019880	chd1	95	81.763	Gambusia_affinis
ENSPEMG00000015939	Chd1	99	92.344	ENSGGOG00000011463	CHD1	99	92.344	Gorilla_gorilla
ENSPEMG00000015939	Chd1	87	78.448	ENSHCOG00000014222	chd1	91	78.820	Hippocampus_comes
ENSPEMG00000015939	Chd1	86	80.844	ENSIPUG00000001369	chd1	92	80.442	Ictalurus_punctatus
ENSPEMG00000015939	Chd1	59	94.181	ENSLAFG00000023183	CHD1	94	94.181	Loxodonta_africana
ENSPEMG00000015939	Chd1	100	95.683	ENSMFAG00000031226	CHD1	100	95.683	Macaca_fascicularis
ENSPEMG00000015939	Chd1	83	96.343	ENSMMUG00000014090	CHD1	99	96.343	Macaca_mulatta
ENSPEMG00000015939	Chd1	100	95.627	ENSMNEG00000045073	CHD1	100	95.627	Macaca_nemestrina
ENSPEMG00000015939	Chd1	96	91.550	ENSMLEG00000041096	CHD1	97	91.672	Mandrillus_leucophaeus
ENSPEMG00000015939	Chd1	70	83.067	ENSMZEG00005010957	chd1	89	83.067	Maylandia_zebra
ENSPEMG00000015939	Chd1	100	94.857	ENSMOCG00000019121	Chd1	100	94.857	Microtus_ochrogaster
ENSPEMG00000015939	Chd1	79	78.508	ENSMALG00000013317	chd1	94	78.097	Monopterus_albus
ENSPEMG00000015939	Chd1	100	96.612	MGP_CAROLIEiJ_G0021099	Chd1	100	96.612	Mus_caroli
ENSPEMG00000015939	Chd1	100	97.021	ENSMUSG00000023852	Chd1	100	97.021	Mus_musculus
ENSPEMG00000015939	Chd1	100	96.379	MGP_PahariEiJ_G0023414	Chd1	99	97.963	Mus_pahari
ENSPEMG00000015939	Chd1	86	76.620	ENSNBRG00000006860	chd1	91	77.108	Neolamprologus_brichardi
ENSPEMG00000015939	Chd1	99	93.372	ENSNLEG00000014493	CHD1	99	93.372	Nomascus_leucogenys
ENSPEMG00000015939	Chd1	100	91.347	ENSOANG00000004891	CHD1	100	93.322	Ornithorhynchus_anatinus
ENSPEMG00000015939	Chd1	59	77.323	ENSORLG00015016725	chd1	93	76.846	Oryzias_latipes_hsok
ENSPEMG00000015939	Chd1	100	92.845	ENSPPAG00000043367	CHD1	100	92.961	Pan_paniscus
ENSPEMG00000015939	Chd1	100	95.444	ENSPTRG00000017103	CHD1	100	95.619	Pan_troglodytes
ENSPEMG00000015939	Chd1	100	95.683	ENSPANG00000006387	CHD1	100	95.683	Papio_anubis
ENSPEMG00000015939	Chd1	90	78.041	ENSPKIG00000024719	chd1	94	78.398	Paramormyrops_kingsleyae
ENSPEMG00000015939	Chd1	73	81.155	ENSPMGG00000005785	chd1	93	81.220	Periophthalmus_magnuspinnatus
ENSPEMG00000015939	Chd1	50	76.241	ENSPLAG00000006473	-	84	78.193	Poecilia_latipinna
ENSPEMG00000015939	Chd1	96	73.605	ENSPREG00000004209	chd1	97	74.424	Poecilia_reticulata
ENSPEMG00000015939	Chd1	83	97.461	ENSRNOG00000014434	Chd1	99	97.461	Rattus_norvegicus
ENSPEMG00000015939	Chd1	100	93.349	ENSRBIG00000044325	CHD1	100	93.407	Rhinopithecus_bieti
ENSPEMG00000015939	Chd1	100	95.566	ENSRROG00000001726	CHD1	100	95.624	Rhinopithecus_roxellana
ENSPEMG00000015939	Chd1	72	82.041	ENSSFOG00015007161	chd1	90	82.114	Scleropages_formosus
ENSPEMG00000015939	Chd1	79	78.709	ENSSDUG00000018314	chd1	94	78.354	Seriola_dumerili
ENSPEMG00000015939	Chd1	51	83.941	ENSSLDG00000017244	chd1	84	85.782	Seriola_lalandi_dorsalis
ENSPEMG00000015939	Chd1	79	78.842	ENSSPAG00000007024	chd1	94	77.893	Stegastes_partitus
ENSPEMG00000015939	Chd1	87	96.685	ENSSSCG00000014177	CHD1	100	96.685	Sus_scrofa
ENSPEMG00000015939	Chd1	90	75.226	ENSTRUG00000010282	chd1	100	73.117	Takifugu_rubripes
ENSPEMG00000015939	Chd1	71	78.025	ENSTNIG00000007101	chd1	100	77.709	Tetraodon_nigroviridis
ENSPEMG00000015939	Chd1	96	71.739	ENSXCOG00000017184	chd1	97	71.524	Xiphophorus_couchianus
ENSPEMG00000015939	Chd1	77	77.626	ENSXMAG00000014538	chd1	94	78.737	Xiphophorus_maculatus