EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPEMG00000016183 (Gene tree)
Gene ID: 102909793
Gene Symbol: Usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Minus strand
Length: 14508 bases
Position: chrKI615411.1:2543631-2558138
Accession: 102909793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000017183	HVSL	PF09749.9	2.7e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000021504	-	1781	XM_006977805	ENSPEMP00000017183	272 (aa)	XP_006977867	UPI00042AD361

Gene Model

Click here to download ENSPEMG00000016183's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000016183's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000016183	Usb1	100	79.412	ENSG00000103005	USB1	100	86.449	Homo_sapiens
ENSPEMG00000016183	Usb1	98	49.110	ENSAPOG00000011942	usb1	99	49.110	Acanthochromis_polyacanthus
ENSPEMG00000016183	Usb1	100	79.044	ENSAMEG00000017205	USB1	100	80.882	Ailuropoda_melanoleuca
ENSPEMG00000016183	Usb1	98	50.741	ENSACIG00000012234	usb1	99	50.741	Amphilophus_citrinellus
ENSPEMG00000016183	Usb1	98	49.823	ENSAOCG00000014831	usb1	99	49.823	Amphiprion_ocellaris
ENSPEMG00000016183	Usb1	98	50.177	ENSAPEG00000000296	usb1	99	50.177	Amphiprion_percula
ENSPEMG00000016183	Usb1	98	48.929	ENSATEG00000009348	usb1	99	48.929	Anabas_testudineus
ENSPEMG00000016183	Usb1	82	69.163	ENSAPLG00000002756	USB1	100	69.027	Anas_platyrhynchos
ENSPEMG00000016183	Usb1	83	62.882	ENSACAG00000015481	USB1	100	62.882	Anolis_carolinensis
ENSPEMG00000016183	Usb1	100	81.250	ENSANAG00000035640	USB1	100	83.456	Aotus_nancymaae
ENSPEMG00000016183	Usb1	89	49.027	ENSACLG00000020586	usb1	99	48.399	Astatotilapia_calliptera
ENSPEMG00000016183	Usb1	82	52.018	ENSAMXG00000040146	usb1	74	52.018	Astyanax_mexicanus
ENSPEMG00000016183	Usb1	100	81.319	ENSBTAG00000015758	USB1	100	80.515	Bos_taurus
ENSPEMG00000016183	Usb1	100	81.618	ENSCJAG00000011733	USB1	100	83.824	Callithrix_jacchus
ENSPEMG00000016183	Usb1	99	80.952	ENSCAFG00000008556	USB1	73	80.952	Canis_familiaris
ENSPEMG00000016183	Usb1	99	79.412	ENSCAFG00020009263	USB1	99	79.487	Canis_lupus_dingo
ENSPEMG00000016183	Usb1	100	79.853	ENSCHIG00000024290	USB1	100	79.412	Capra_hircus
ENSPEMG00000016183	Usb1	100	82.721	ENSTSYG00000006997	USB1	100	82.353	Carlito_syrichta
ENSPEMG00000016183	Usb1	85	69.397	ENSCAPG00000009057	USB1	100	69.397	Cavia_aperea
ENSPEMG00000016183	Usb1	100	79.044	ENSCPOG00000014325	USB1	100	79.044	Cavia_porcellus
ENSPEMG00000016183	Usb1	100	84.191	ENSCCAG00000022132	USB1	100	84.191	Cebus_capucinus
ENSPEMG00000016183	Usb1	100	80.147	ENSCATG00000032174	USB1	100	82.784	Cercocebus_atys
ENSPEMG00000016183	Usb1	65	85.227	ENSCLAG00000007363	USB1	100	85.227	Chinchilla_lanigera
ENSPEMG00000016183	Usb1	100	80.515	ENSCSAG00000004783	USB1	100	83.150	Chlorocebus_sabaeus
ENSPEMG00000016183	Usb1	100	59.712	ENSCPBG00000026943	USB1	100	60.072	Chrysemys_picta_bellii
ENSPEMG00000016183	Usb1	82	30.472	ENSCING00000011490	-	86	30.472	Ciona_intestinalis
ENSPEMG00000016183	Usb1	81	31.278	ENSCSAVG00000000894	-	81	31.111	Ciona_savignyi
ENSPEMG00000016183	Usb1	100	79.412	ENSCANG00000037135	USB1	100	82.051	Colobus_angolensis_palliatus
ENSPEMG00000016183	Usb1	100	92.279	ENSCGRG00001011243	USB1	100	91.912	Cricetulus_griseus_chok1gshd
ENSPEMG00000016183	Usb1	100	92.279	ENSCGRG00000013252	USB1	100	91.912	Cricetulus_griseus_crigri
ENSPEMG00000016183	Usb1	98	46.429	ENSCSEG00000013881	usb1	99	46.429	Cynoglossus_semilaevis
ENSPEMG00000016183	Usb1	82	49.565	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSPEMG00000016183	Usb1	88	48.739	ENSDARG00000003841	usb1	99	45.091	Danio_rerio
ENSPEMG00000016183	Usb1	100	81.319	ENSDORG00000001888	Usb1	100	81.319	Dipodomys_ordii
ENSPEMG00000016183	Usb1	75	40.000	FBgn0037713	CG16790	97	36.015	Drosophila_melanogaster
ENSPEMG00000016183	Usb1	100	66.912	ENSETEG00000019682	USB1	100	66.544	Echinops_telfairi
ENSPEMG00000016183	Usb1	89	44.922	ENSEBUG00000005889	usb1	89	44.922	Eptatretus_burgeri
ENSPEMG00000016183	Usb1	100	81.618	ENSEASG00005005484	USB1	100	81.250	Equus_asinus_asinus
ENSPEMG00000016183	Usb1	100	81.985	ENSECAG00000019493	USB1	91	81.618	Equus_caballus
ENSPEMG00000016183	Usb1	65	78.409	ENSEEUG00000000154	USB1	66	78.409	Erinaceus_europaeus
ENSPEMG00000016183	Usb1	89	48.770	ENSELUG00000010974	usb1	87	48.770	Esox_lucius
ENSPEMG00000016183	Usb1	100	83.883	ENSFCAG00000002693	USB1	100	82.721	Felis_catus
ENSPEMG00000016183	Usb1	82	66.071	ENSFALG00000006876	USB1	99	59.353	Ficedula_albicollis
ENSPEMG00000016183	Usb1	100	80.515	ENSFDAG00000010052	USB1	100	80.515	Fukomys_damarensis
ENSPEMG00000016183	Usb1	86	48.560	ENSFHEG00000012334	usb1	96	46.614	Fundulus_heteroclitus
ENSPEMG00000016183	Usb1	82	52.018	ENSGMOG00000004228	usb1	99	52.018	Gadus_morhua
ENSPEMG00000016183	Usb1	82	65.625	ENSGALG00000035604	USB1	100	60.440	Gallus_gallus
ENSPEMG00000016183	Usb1	98	48.746	ENSGAFG00000021890	usb1	99	48.746	Gambusia_affinis
ENSPEMG00000016183	Usb1	96	46.538	ENSGACG00000003257	usb1	99	47.670	Gasterosteus_aculeatus
ENSPEMG00000016183	Usb1	100	62.816	ENSGAGG00000022572	USB1	100	62.044	Gopherus_agassizii
ENSPEMG00000016183	Usb1	100	79.779	ENSGGOG00000017147	USB1	100	81.985	Gorilla_gorilla
ENSPEMG00000016183	Usb1	89	51.852	ENSHBUG00000009823	usb1	99	50.178	Haplochromis_burtoni
ENSPEMG00000016183	Usb1	100	81.985	ENSHGLG00000016078	USB1	98	81.985	Heterocephalus_glaber_female
ENSPEMG00000016183	Usb1	100	81.985	ENSHGLG00100005562	USB1	98	81.985	Heterocephalus_glaber_male
ENSPEMG00000016183	Usb1	80	54.839	ENSHCOG00000015633	usb1	99	50.000	Hippocampus_comes
ENSPEMG00000016183	Usb1	98	47.917	ENSIPUG00000008601	usb1	78	54.018	Ictalurus_punctatus
ENSPEMG00000016183	Usb1	100	83.883	ENSSTOG00000007548	USB1	100	82.784	Ictidomys_tridecemlineatus
ENSPEMG00000016183	Usb1	100	85.662	ENSJJAG00000021859	Usb1	100	85.662	Jaculus_jaculus
ENSPEMG00000016183	Usb1	83	51.982	ENSKMAG00000007200	usb1	99	47.143	Kryptolebias_marmoratus
ENSPEMG00000016183	Usb1	73	52.525	ENSLBEG00000008452	usb1	64	53.158	Labrus_bergylta
ENSPEMG00000016183	Usb1	75	59.135	ENSLACG00000000105	USB1	72	59.135	Latimeria_chalumnae
ENSPEMG00000016183	Usb1	96	51.527	ENSLOCG00000000465	usb1	99	51.418	Lepisosteus_oculatus
ENSPEMG00000016183	Usb1	100	64.964	ENSLAFG00000002267	USB1	100	65.693	Loxodonta_africana
ENSPEMG00000016183	Usb1	100	80.515	ENSMFAG00000003926	USB1	100	83.150	Macaca_fascicularis
ENSPEMG00000016183	Usb1	100	80.515	ENSMMUG00000022669	USB1	100	83.150	Macaca_mulatta
ENSPEMG00000016183	Usb1	100	80.147	ENSMNEG00000042487	USB1	100	82.784	Macaca_nemestrina
ENSPEMG00000016183	Usb1	100	80.515	ENSMLEG00000028756	USB1	100	83.150	Mandrillus_leucophaeus
ENSPEMG00000016183	Usb1	98	50.179	ENSMAMG00000015092	usb1	99	48.746	Mastacembelus_armatus
ENSPEMG00000016183	Usb1	89	49.027	ENSMZEG00005010008	usb1	99	49.822	Maylandia_zebra
ENSPEMG00000016183	Usb1	100	90.441	ENSMAUG00000007832	Usb1	100	90.441	Mesocricetus_auratus
ENSPEMG00000016183	Usb1	100	80.515	ENSMICG00000004900	USB1	100	82.353	Microcebus_murinus
ENSPEMG00000016183	Usb1	100	90.809	ENSMOCG00000022647	Usb1	100	90.809	Microtus_ochrogaster
ENSPEMG00000016183	Usb1	84	50.877	ENSMMOG00000000490	usb1	99	47.566	Mola_mola
ENSPEMG00000016183	Usb1	100	64.727	ENSMODG00000014067	USB1	100	66.545	Monodelphis_domestica
ENSPEMG00000016183	Usb1	83	51.982	ENSMALG00000005930	usb1	99	47.687	Monopterus_albus
ENSPEMG00000016183	Usb1	100	87.500	MGP_CAROLIEiJ_G0031421	Usb1	100	91.150	Mus_caroli
ENSPEMG00000016183	Usb1	100	87.868	ENSMUSG00000031792	Usb1	100	92.920	Mus_musculus
ENSPEMG00000016183	Usb1	100	87.868	MGP_PahariEiJ_G0023019	Usb1	100	92.308	Mus_pahari
ENSPEMG00000016183	Usb1	100	87.500	MGP_SPRETEiJ_G0032540	Usb1	100	87.500	Mus_spretus
ENSPEMG00000016183	Usb1	100	80.882	ENSMPUG00000004684	USB1	96	80.515	Mustela_putorius_furo
ENSPEMG00000016183	Usb1	85	86.580	ENSMLUG00000007400	USB1	100	86.580	Myotis_lucifugus
ENSPEMG00000016183	Usb1	100	87.132	ENSNGAG00000009703	Usb1	100	88.603	Nannospalax_galili
ENSPEMG00000016183	Usb1	89	47.325	ENSNBRG00000008747	usb1	99	53.271	Neolamprologus_brichardi
ENSPEMG00000016183	Usb1	94	78.988	ENSNLEG00000003340	USB1	100	81.323	Nomascus_leucogenys
ENSPEMG00000016183	Usb1	57	57.692	ENSMEUG00000003328	-	100	57.692	Notamacropus_eugenii
ENSPEMG00000016183	Usb1	62	94.118	ENSOPRG00000011803	USB1	72	94.118	Ochotona_princeps
ENSPEMG00000016183	Usb1	100	79.779	ENSODEG00000016214	USB1	100	79.779	Octodon_degus
ENSPEMG00000016183	Usb1	98	50.178	ENSONIG00000011063	usb1	99	48.399	Oreochromis_niloticus
ENSPEMG00000016183	Usb1	82	71.111	ENSOANG00000012118	USB1	94	71.111	Ornithorhynchus_anatinus
ENSPEMG00000016183	Usb1	82	50.446	ENSORLG00000012479	usb1	99	45.756	Oryzias_latipes
ENSPEMG00000016183	Usb1	82	50.446	ENSORLG00020018671	usb1	99	45.848	Oryzias_latipes_hni
ENSPEMG00000016183	Usb1	90	46.875	ENSORLG00015009679	usb1	99	45.487	Oryzias_latipes_hsok
ENSPEMG00000016183	Usb1	82	50.893	ENSOMEG00000012930	usb1	99	46.570	Oryzias_melastigma
ENSPEMG00000016183	Usb1	100	76.103	ENSOGAG00000003273	USB1	100	76.103	Otolemur_garnettii
ENSPEMG00000016183	Usb1	92	79.681	ENSOARG00000001107	USB1	93	81.070	Ovis_aries
ENSPEMG00000016183	Usb1	100	80.147	ENSPPAG00000042137	USB1	100	82.353	Pan_paniscus
ENSPEMG00000016183	Usb1	100	83.824	ENSPPRG00000024797	USB1	100	83.088	Panthera_pardus
ENSPEMG00000016183	Usb1	100	83.088	ENSPTIG00000007506	USB1	100	82.353	Panthera_tigris_altaica
ENSPEMG00000016183	Usb1	100	72.426	ENSPTRG00000008172	USB1	100	86.916	Pan_troglodytes
ENSPEMG00000016183	Usb1	100	80.515	ENSPANG00000025138	USB1	100	83.150	Papio_anubis
ENSPEMG00000016183	Usb1	96	48.659	ENSPKIG00000015109	usb1	82	51.230	Paramormyrops_kingsleyae
ENSPEMG00000016183	Usb1	82	48.739	ENSPSIG00000004305	USB1	100	48.739	Pelodiscus_sinensis
ENSPEMG00000016183	Usb1	82	52.018	ENSPMGG00000017725	usb1	97	47.368	Periophthalmus_magnuspinnatus
ENSPEMG00000016183	Usb1	82	50.442	ENSPMAG00000000462	usb1	95	50.442	Petromyzon_marinus
ENSPEMG00000016183	Usb1	98	48.551	ENSPFOG00000011130	usb1	99	48.551	Poecilia_formosa
ENSPEMG00000016183	Usb1	98	48.188	ENSPLAG00000009820	usb1	99	48.188	Poecilia_latipinna
ENSPEMG00000016183	Usb1	98	48.913	ENSPMEG00000006402	usb1	99	49.275	Poecilia_mexicana
ENSPEMG00000016183	Usb1	86	49.187	ENSPREG00000001047	usb1	98	49.187	Poecilia_reticulata
ENSPEMG00000016183	Usb1	95	77.992	ENSPPYG00000007401	USB1	100	77.992	Pongo_abelii
ENSPEMG00000016183	Usb1	100	82.721	ENSPCOG00000022612	USB1	100	82.721	Propithecus_coquereli
ENSPEMG00000016183	Usb1	100	78.755	ENSPVAG00000004613	USB1	100	77.941	Pteropus_vampyrus
ENSPEMG00000016183	Usb1	98	50.178	ENSPNYG00000022262	usb1	99	50.178	Pundamilia_nyererei
ENSPEMG00000016183	Usb1	82	52.232	ENSPNAG00000011736	usb1	76	52.232	Pygocentrus_nattereri
ENSPEMG00000016183	Usb1	100	90.074	ENSRNOG00000013216	Usb1	100	90.074	Rattus_norvegicus
ENSPEMG00000016183	Usb1	100	73.897	ENSRBIG00000044466	USB1	100	88.318	Rhinopithecus_bieti
ENSPEMG00000016183	Usb1	100	80.515	ENSRROG00000029211	USB1	100	83.150	Rhinopithecus_roxellana
ENSPEMG00000016183	Usb1	100	81.250	ENSSBOG00000029362	USB1	100	83.456	Saimiri_boliviensis_boliviensis
ENSPEMG00000016183	Usb1	81	72.146	ENSSHAG00000006993	USB1	94	69.620	Sarcophilus_harrisii
ENSPEMG00000016183	Usb1	85	55.411	ENSSFOG00015023663	usb1	73	55.411	Scleropages_formosus
ENSPEMG00000016183	Usb1	98	47.331	ENSSMAG00000015834	usb1	99	47.157	Scophthalmus_maximus
ENSPEMG00000016183	Usb1	82	54.018	ENSSDUG00000002949	usb1	99	46.975	Seriola_dumerili
ENSPEMG00000016183	Usb1	82	54.018	ENSSLDG00000014174	usb1	80	54.018	Seriola_lalandi_dorsalis
ENSPEMG00000016183	Usb1	79	66.355	ENSSPUG00000006741	USB1	100	66.355	Sphenodon_punctatus
ENSPEMG00000016183	Usb1	98	47.350	ENSSPAG00000007484	usb1	99	47.887	Stegastes_partitus
ENSPEMG00000016183	Usb1	100	81.227	ENSSSCG00000002807	USB1	100	82.721	Sus_scrofa
ENSPEMG00000016183	Usb1	77	69.378	ENSTGUG00000004792	USB1	99	60.294	Taeniopygia_guttata
ENSPEMG00000016183	Usb1	98	46.715	ENSTRUG00000021069	usb1	99	46.715	Takifugu_rubripes
ENSPEMG00000016183	Usb1	98	45.693	ENSTNIG00000000626	usb1	98	44.195	Tetraodon_nigroviridis
ENSPEMG00000016183	Usb1	85	62.931	ENSTBEG00000001507	USB1	100	62.931	Tupaia_belangeri
ENSPEMG00000016183	Usb1	100	79.044	ENSUAMG00000016823	USB1	100	80.882	Ursus_americanus
ENSPEMG00000016183	Usb1	79	85.514	ENSUMAG00000021369	USB1	100	85.514	Ursus_maritimus
ENSPEMG00000016183	Usb1	77	57.416	ENSVPAG00000009834	-	59	83.193	Vicugna_pacos
ENSPEMG00000016183	Usb1	99	80.812	ENSVVUG00000023700	USB1	89	84.416	Vulpes_vulpes
ENSPEMG00000016183	Usb1	80	57.339	ENSXETG00000013795	usb1	94	55.508	Xenopus_tropicalis
ENSPEMG00000016183	Usb1	83	53.070	ENSXMAG00000024687	usb1	80	49.398	Xiphophorus_maculatus