EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000017503 (Gene tree)
Gene ID: 102927789
Gene Symbol: Smarca1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 69841 bases
Position: chrKI616152.1:430728-500568
Accession: 102927789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000019163	ResIII	PF04851.15	9.4e-12	1	1
ENSPEMP00000019156	ResIII	PF04851.15	1e-11	1	1
ENSPEMP00000019156	DEAD	PF00270.29	6.7e-07	1	1
ENSPEMP00000019163	DEAD	PF00270.29	6.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000023494	-	3780	XM_006994982	ENSPEMP00000019156	1047 (aa)	XP_006995044	UPI00042A9F56
ENSPEMT00000023501	-	3165	XM_006994984	ENSPEMP00000019163	1054 (aa)	XP_006995046	UPI00077D9CBF

Gene Model

Click here to download ENSPEMG00000017503's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000017503's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000017503	Smarca1	54	39.404	ENSPEMG00000017579	Hells	72	41.176
ENSPEMG00000017503	Smarca1	90	85.820	ENSPEMG00000008060	Smarca5	94	85.536

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000017503	Smarca1	100	96.964	ENSG00000102038	SMARCA1	100	96.964	Homo_sapiens
ENSPEMG00000017503	Smarca1	90	83.439	ENSAPOG00000016035	smarca5	96	84.494	Acanthochromis_polyacanthus
ENSPEMG00000017503	Smarca1	99	95.415	ENSAMEG00000015218	SMARCA1	98	95.415	Ailuropoda_melanoleuca
ENSPEMG00000017503	Smarca1	82	84.606	ENSACIG00000016982	smarca5	97	84.518	Amphilophus_citrinellus
ENSPEMG00000017503	Smarca1	90	83.439	ENSAOCG00000015578	smarca5	93	82.389	Amphiprion_ocellaris
ENSPEMG00000017503	Smarca1	90	83.439	ENSAPEG00000011117	smarca5	97	84.587	Amphiprion_percula
ENSPEMG00000017503	Smarca1	95	80.642	ENSATEG00000012894	smarca5	93	83.438	Anabas_testudineus
ENSPEMG00000017503	Smarca1	91	91.300	ENSAPLG00000013149	SMARCA1	97	91.684	Anas_platyrhynchos
ENSPEMG00000017503	Smarca1	97	89.021	ENSACAG00000011376	SMARCA1	93	91.198	Anolis_carolinensis
ENSPEMG00000017503	Smarca1	97	92.210	ENSANAG00000023098	SMARCA1	98	91.786	Aotus_nancymaae
ENSPEMG00000017503	Smarca1	94	81.015	ENSACLG00000025356	smarca5	93	83.042	Astatotilapia_calliptera
ENSPEMG00000017503	Smarca1	95	80.542	ENSAMXG00000005709	smarca5	92	83.787	Astyanax_mexicanus
ENSPEMG00000017503	Smarca1	87	88.453	ENSAMXG00000011227	smarca1	99	89.183	Astyanax_mexicanus
ENSPEMG00000017503	Smarca1	99	96.384	ENSBTAG00000002292	SMARCA1	100	96.384	Bos_taurus
ENSPEMG00000017503	Smarca1	92	63.201	WBGene00002169	isw-1	94	64.301	Caenorhabditis_elegans
ENSPEMG00000017503	Smarca1	99	96.657	ENSCJAG00000002868	SMARCA1	98	96.657	Callithrix_jacchus
ENSPEMG00000017503	Smarca1	99	87.464	ENSCAFG00000018673	SMARCA1	98	87.464	Canis_familiaris
ENSPEMG00000017503	Smarca1	99	96.538	ENSCAFG00020001751	SMARCA1	98	96.538	Canis_lupus_dingo
ENSPEMG00000017503	Smarca1	100	96.405	ENSCHIG00000009837	SMARCA1	100	96.405	Capra_hircus
ENSPEMG00000017503	Smarca1	95	96.970	ENSTSYG00000004240	SMARCA1	99	96.970	Carlito_syrichta
ENSPEMG00000017503	Smarca1	96	96.559	ENSCPOG00000013601	SMARCA1	100	94.782	Cavia_porcellus
ENSPEMG00000017503	Smarca1	97	94.060	ENSCCAG00000030817	SMARCA1	98	93.601	Cebus_capucinus
ENSPEMG00000017503	Smarca1	100	96.562	ENSCATG00000015921	SMARCA1	100	96.562	Cercocebus_atys
ENSPEMG00000017503	Smarca1	98	96.035	ENSCLAG00000002171	SMARCA1	100	95.636	Chinchilla_lanigera
ENSPEMG00000017503	Smarca1	99	96.538	ENSCSAG00000008460	SMARCA1	98	96.538	Chlorocebus_sabaeus
ENSPEMG00000017503	Smarca1	94	91.344	ENSCPBG00000001146	SMARCA1	92	91.709	Chrysemys_picta_bellii
ENSPEMG00000017503	Smarca1	91	73.216	ENSCING00000004110	swi/snf	95	73.216	Ciona_intestinalis
ENSPEMG00000017503	Smarca1	91	73.201	ENSCSAVG00000004620	-	100	73.608	Ciona_savignyi
ENSPEMG00000017503	Smarca1	99	96.848	ENSCANG00000007183	SMARCA1	98	96.848	Colobus_angolensis_palliatus
ENSPEMG00000017503	Smarca1	100	98.009	ENSCGRG00001010776	Smarca1	100	98.009	Cricetulus_griseus_chok1gshd
ENSPEMG00000017503	Smarca1	95	97.588	ENSCGRG00000015301	Smarca1	99	97.588	Cricetulus_griseus_crigri
ENSPEMG00000017503	Smarca1	92	83.021	ENSCSEG00000000328	smarca5	93	82.389	Cynoglossus_semilaevis
ENSPEMG00000017503	Smarca1	91	82.408	ENSCVAG00000008668	smarca5	97	84.000	Cyprinodon_variegatus
ENSPEMG00000017503	Smarca1	93	85.485	ENSDARG00000012776	smarca1	96	85.485	Danio_rerio
ENSPEMG00000017503	Smarca1	95	80.161	ENSDARG00000052348	smarca5	93	82.474	Danio_rerio
ENSPEMG00000017503	Smarca1	99	94.236	ENSDNOG00000004315	SMARCA1	100	94.236	Dasypus_novemcinctus
ENSPEMG00000017503	Smarca1	100	95.415	ENSDORG00000009270	Smarca1	100	95.320	Dipodomys_ordii
ENSPEMG00000017503	Smarca1	93	72.403	FBgn0011604	Iswi	94	73.388	Drosophila_melanogaster
ENSPEMG00000017503	Smarca1	79	93.750	ENSETEG00000017426	SMARCA1	86	93.750	Echinops_telfairi
ENSPEMG00000017503	Smarca1	90	80.932	ENSEBUG00000001239	smarca5	95	80.849	Eptatretus_burgeri
ENSPEMG00000017503	Smarca1	95	92.744	ENSEASG00005008218	SMARCA1	97	93.693	Equus_asinus_asinus
ENSPEMG00000017503	Smarca1	99	96.261	ENSECAG00000012106	SMARCA1	98	96.261	Equus_caballus
ENSPEMG00000017503	Smarca1	77	97.682	ENSEEUG00000014927	SMARCA1	84	97.682	Erinaceus_europaeus
ENSPEMG00000017503	Smarca1	92	87.150	ENSELUG00000010515	smarca1	96	86.775	Esox_lucius
ENSPEMG00000017503	Smarca1	99	97.039	ENSFCAG00000018496	SMARCA1	98	97.039	Felis_catus
ENSPEMG00000017503	Smarca1	87	91.895	ENSFALG00000000209	SMARCA1	98	91.895	Ficedula_albicollis
ENSPEMG00000017503	Smarca1	95	97.194	ENSFDAG00000009818	SMARCA1	98	97.194	Fukomys_damarensis
ENSPEMG00000017503	Smarca1	91	82.827	ENSFHEG00000007687	smarca5	91	84.912	Fundulus_heteroclitus
ENSPEMG00000017503	Smarca1	94	89.468	ENSGALG00000008431	SMARCA1	96	91.113	Gallus_gallus
ENSPEMG00000017503	Smarca1	91	82.618	ENSGAFG00000017731	smarca5	93	82.492	Gambusia_affinis
ENSPEMG00000017503	Smarca1	91	92.405	ENSGAGG00000023575	SMARCA1	98	92.405	Gopherus_agassizii
ENSPEMG00000017503	Smarca1	71	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSPEMG00000017503	Smarca1	100	95.731	ENSHGLG00000003080	SMARCA1	100	95.731	Heterocephalus_glaber_female
ENSPEMG00000017503	Smarca1	94	96.247	ENSHGLG00100001102	SMARCA1	98	96.247	Heterocephalus_glaber_male
ENSPEMG00000017503	Smarca1	90	83.475	ENSHCOG00000005458	smarca5	93	82.698	Hippocampus_comes
ENSPEMG00000017503	Smarca1	94	80.851	ENSIPUG00000005229	SMARCA5	95	82.627	Ictalurus_punctatus
ENSPEMG00000017503	Smarca1	95	85.427	ENSIPUG00000016905	Smarca1	98	87.047	Ictalurus_punctatus
ENSPEMG00000017503	Smarca1	100	96.110	ENSSTOG00000014524	SMARCA1	100	96.110	Ictidomys_tridecemlineatus
ENSPEMG00000017503	Smarca1	100	95.702	ENSJJAG00000002593	Smarca1	100	95.702	Jaculus_jaculus
ENSPEMG00000017503	Smarca1	90	83.686	ENSKMAG00000003777	smarca5	93	82.904	Kryptolebias_marmoratus
ENSPEMG00000017503	Smarca1	89	82.585	ENSLBEG00000013295	SMARCA1	100	84.197	Labrus_bergylta
ENSPEMG00000017503	Smarca1	91	82.531	ENSLBEG00000018112	smarca5	93	82.492	Labrus_bergylta
ENSPEMG00000017503	Smarca1	95	88.076	ENSLACG00000016697	SMARCA1	96	89.286	Latimeria_chalumnae
ENSPEMG00000017503	Smarca1	92	88.981	ENSLOCG00000014591	smarca1	95	88.843	Lepisosteus_oculatus
ENSPEMG00000017503	Smarca1	94	96.134	ENSLAFG00000000896	SMARCA1	99	95.956	Loxodonta_africana
ENSPEMG00000017503	Smarca1	100	96.562	ENSMFAG00000002117	SMARCA1	100	96.562	Macaca_fascicularis
ENSPEMG00000017503	Smarca1	100	96.562	ENSMMUG00000008818	SMARCA1	100	96.562	Macaca_mulatta
ENSPEMG00000017503	Smarca1	100	96.562	ENSMNEG00000041768	SMARCA1	100	96.562	Macaca_nemestrina
ENSPEMG00000017503	Smarca1	99	96.848	ENSMLEG00000043198	SMARCA1	98	96.848	Mandrillus_leucophaeus
ENSPEMG00000017503	Smarca1	91	82.827	ENSMAMG00000014294	smarca5	93	82.801	Mastacembelus_armatus
ENSPEMG00000017503	Smarca1	94	81.015	ENSMZEG00005009369	smarca5	93	83.042	Maylandia_zebra
ENSPEMG00000017503	Smarca1	93	90.564	ENSMGAG00000007042	SMARCA1	97	90.743	Meleagris_gallopavo
ENSPEMG00000017503	Smarca1	100	98.861	ENSMAUG00000008133	Smarca1	100	98.861	Mesocricetus_auratus
ENSPEMG00000017503	Smarca1	97	96.689	ENSMICG00000015768	SMARCA1	98	96.084	Microcebus_murinus
ENSPEMG00000017503	Smarca1	100	98.292	ENSMOCG00000009464	Smarca1	100	98.292	Microtus_ochrogaster
ENSPEMG00000017503	Smarca1	91	80.753	ENSMMOG00000005547	smarca5	97	80.742	Mola_mola
ENSPEMG00000017503	Smarca1	97	88.004	ENSMODG00000013187	-	94	90.612	Monodelphis_domestica
ENSPEMG00000017503	Smarca1	92	81.959	ENSMALG00000002081	smarca5	97	81.161	Monopterus_albus
ENSPEMG00000017503	Smarca1	100	98.472	MGP_CAROLIEiJ_G0033034	Smarca1	100	98.472	Mus_caroli
ENSPEMG00000017503	Smarca1	100	98.472	ENSMUSG00000031099	Smarca1	100	98.472	Mus_musculus
ENSPEMG00000017503	Smarca1	100	98.567	MGP_PahariEiJ_G0031579	Smarca1	100	98.567	Mus_pahari
ENSPEMG00000017503	Smarca1	100	98.663	MGP_SPRETEiJ_G0034192	Smarca1	100	98.663	Mus_spretus
ENSPEMG00000017503	Smarca1	99	96.848	ENSMPUG00000017423	SMARCA1	92	96.848	Mustela_putorius_furo
ENSPEMG00000017503	Smarca1	98	93.883	ENSMLUG00000029614	SMARCA1	98	93.136	Myotis_lucifugus
ENSPEMG00000017503	Smarca1	100	97.913	ENSNGAG00000006492	Smarca1	100	97.913	Nannospalax_galili
ENSPEMG00000017503	Smarca1	91	83.037	ENSNBRG00000004463	smarca5	97	83.145	Neolamprologus_brichardi
ENSPEMG00000017503	Smarca1	99	96.180	ENSNLEG00000015179	SMARCA1	99	96.562	Nomascus_leucogenys
ENSPEMG00000017503	Smarca1	90	81.540	ENSMEUG00000008819	SMARCA1	99	81.540	Notamacropus_eugenii
ENSPEMG00000017503	Smarca1	98	95.938	ENSODEG00000012163	SMARCA1	100	95.446	Octodon_degus
ENSPEMG00000017503	Smarca1	94	81.117	ENSONIG00000009993	smarca5	93	83.145	Oreochromis_niloticus
ENSPEMG00000017503	Smarca1	91	92.835	ENSOANG00000002862	SMARCA1	98	92.835	Ornithorhynchus_anatinus
ENSPEMG00000017503	Smarca1	99	93.654	ENSOCUG00000001047	SMARCA1	98	93.654	Oryctolagus_cuniculus
ENSPEMG00000017503	Smarca1	90	83.263	ENSORLG00000021998	smarca5	93	82.492	Oryzias_latipes
ENSPEMG00000017503	Smarca1	90	83.369	ENSORLG00020017679	smarca5	93	82.595	Oryzias_latipes_hni
ENSPEMG00000017503	Smarca1	90	83.263	ENSORLG00015017210	smarca5	93	82.389	Oryzias_latipes_hsok
ENSPEMG00000017503	Smarca1	90	83.263	ENSOMEG00000000086	smarca5	93	82.389	Oryzias_melastigma
ENSPEMG00000017503	Smarca1	100	96.395	ENSOGAG00000004399	SMARCA1	100	96.395	Otolemur_garnettii
ENSPEMG00000017503	Smarca1	94	96.263	ENSOARG00000014638	SMARCA1	98	97.297	Ovis_aries
ENSPEMG00000017503	Smarca1	99	96.944	ENSPPAG00000034647	SMARCA1	98	96.944	Pan_paniscus
ENSPEMG00000017503	Smarca1	99	97.039	ENSPPRG00000008929	SMARCA1	98	97.039	Panthera_pardus
ENSPEMG00000017503	Smarca1	94	95.678	ENSPTIG00000000915	SMARCA1	96	95.770	Panthera_tigris_altaica
ENSPEMG00000017503	Smarca1	100	96.562	ENSPTRG00000049876	SMARCA1	100	96.562	Pan_troglodytes
ENSPEMG00000017503	Smarca1	99	96.944	ENSPANG00000003871	SMARCA1	98	96.944	Papio_anubis
ENSPEMG00000017503	Smarca1	91	87.513	ENSPKIG00000013411	smarca1	96	87.513	Paramormyrops_kingsleyae
ENSPEMG00000017503	Smarca1	94	91.001	ENSPSIG00000010101	SMARCA1	98	92.194	Pelodiscus_sinensis
ENSPEMG00000017503	Smarca1	97	89.096	ENSPCIG00000015460	SMARCA1	97	91.335	Phascolarctos_cinereus
ENSPEMG00000017503	Smarca1	90	83.475	ENSPFOG00000007649	smarca5	93	82.492	Poecilia_formosa
ENSPEMG00000017503	Smarca1	90	83.475	ENSPLAG00000003363	smarca5	93	82.492	Poecilia_latipinna
ENSPEMG00000017503	Smarca1	90	83.369	ENSPMEG00000019849	smarca5	94	82.088	Poecilia_mexicana
ENSPEMG00000017503	Smarca1	90	83.369	ENSPREG00000023250	smarca5	94	82.088	Poecilia_reticulata
ENSPEMG00000017503	Smarca1	99	93.123	ENSPPYG00000020703	SMARCA1	98	93.750	Pongo_abelii
ENSPEMG00000017503	Smarca1	78	90.909	ENSPCOG00000020722	SMARCA1	94	92.047	Propithecus_coquereli
ENSPEMG00000017503	Smarca1	92	96.173	ENSPVAG00000003805	SMARCA1	94	96.173	Pteropus_vampyrus
ENSPEMG00000017503	Smarca1	56	83.562	ENSPNYG00000012299	smarca5	92	82.400	Pundamilia_nyererei
ENSPEMG00000017503	Smarca1	99	98.077	ENSRNOG00000003762	Smarca1	98	98.077	Rattus_norvegicus
ENSPEMG00000017503	Smarca1	99	96.848	ENSRROG00000034167	SMARCA1	98	96.848	Rhinopithecus_roxellana
ENSPEMG00000017503	Smarca1	95	96.040	ENSSBOG00000020641	SMARCA1	98	97.505	Saimiri_boliviensis_boliviensis
ENSPEMG00000017503	Smarca1	91	86.029	ENSSHAG00000013518	SMARCA1	97	86.029	Sarcophilus_harrisii
ENSPEMG00000017503	Smarca1	93	81.753	ENSSFOG00015016794	smarca5	98	83.738	Scleropages_formosus
ENSPEMG00000017503	Smarca1	93	86.837	ENSSFOG00015009043	smarca1	96	87.576	Scleropages_formosus
ENSPEMG00000017503	Smarca1	91	82.581	ENSSMAG00000004801	smarca5	93	82.541	Scophthalmus_maximus
ENSPEMG00000017503	Smarca1	91	82.513	ENSSDUG00000020690	smarca5	94	82.492	Seriola_dumerili
ENSPEMG00000017503	Smarca1	91	82.513	ENSSLDG00000025190	smarca5	94	82.492	Seriola_lalandi_dorsalis
ENSPEMG00000017503	Smarca1	81	97.518	ENSSARG00000000842	SMARCA1	92	90.399	Sorex_araneus
ENSPEMG00000017503	Smarca1	95	90.000	ENSSPUG00000000590	SMARCA1	95	90.254	Sphenodon_punctatus
ENSPEMG00000017503	Smarca1	91	82.513	ENSSPAG00000002894	smarca5	94	84.494	Stegastes_partitus
ENSPEMG00000017503	Smarca1	99	96.073	ENSSSCG00000012649	SMARCA1	100	96.073	Sus_scrofa
ENSPEMG00000017503	Smarca1	91	91.090	ENSTGUG00000003899	-	97	91.476	Taeniopygia_guttata
ENSPEMG00000017503	Smarca1	91	82.723	ENSTRUG00000014094	smarca5	93	82.595	Takifugu_rubripes
ENSPEMG00000017503	Smarca1	90	82.803	ENSTNIG00000017717	smarca5	92	81.874	Tetraodon_nigroviridis
ENSPEMG00000017503	Smarca1	94	90.562	ENSTBEG00000014973	SMARCA1	100	90.562	Tupaia_belangeri
ENSPEMG00000017503	Smarca1	94	94.646	ENSTTRG00000006168	SMARCA1	100	94.646	Tursiops_truncatus
ENSPEMG00000017503	Smarca1	99	95.962	ENSUAMG00000020201	SMARCA1	98	95.962	Ursus_americanus
ENSPEMG00000017503	Smarca1	98	89.719	ENSUMAG00000004073	SMARCA1	99	97.136	Ursus_maritimus
ENSPEMG00000017503	Smarca1	74	98.730	ENSVPAG00000010492	-	80	98.730	Vicugna_pacos
ENSPEMG00000017503	Smarca1	94	97.149	ENSVVUG00000008878	SMARCA1	100	97.300	Vulpes_vulpes
ENSPEMG00000017503	Smarca1	92	88.889	ENSXETG00000001526	smarca1	98	88.741	Xenopus_tropicalis
ENSPEMG00000017503	Smarca1	91	82.513	ENSXCOG00000011170	smarca5	96	82.389	Xiphophorus_couchianus
ENSPEMG00000017503	Smarca1	91	82.513	ENSXMAG00000009678	smarca5	98	83.551	Xiphophorus_maculatus