EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPEMG00000019968 (Gene tree)
Gene ID: 102909928
Gene Symbol: -
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Minus strand
Length: 13377 bases
Position: chrKI615475.1:310728-324104
Accession: 102909928
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000022676	Smg4_UPF3	PF03467.15	7.7e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000027045	-	1758	XM_006981279	ENSPEMP00000022676	422 (aa)	XP_006981341	UPI00042AE931

Gene Model

Click here to download ENSPEMG00000019968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000019968's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000019968	-	99	71.659	ENSG00000169062	UPF3A	99	70.192	Homo_sapiens
ENSPEMG00000019968	-	87	58.247	ENSAPOG00000013484	upf3a	80	60.377	Acanthochromis_polyacanthus
ENSPEMG00000019968	-	57	63.200	ENSAPOG00000012775	upf3b	77	51.695	Acanthochromis_polyacanthus
ENSPEMG00000019968	-	92	71.358	ENSAMEG00000004259	UPF3A	89	71.358	Ailuropoda_melanoleuca
ENSPEMG00000019968	-	87	57.990	ENSAOCG00000020784	upf3a	80	60.108	Amphiprion_ocellaris
ENSPEMG00000019968	-	57	61.200	ENSAOCG00000000706	upf3b	76	50.142	Amphiprion_ocellaris
ENSPEMG00000019968	-	87	57.990	ENSAPEG00000003519	upf3a	80	60.108	Amphiprion_percula
ENSPEMG00000019968	-	57	63.200	ENSAPEG00000005545	upf3b	77	51.695	Amphiprion_percula
ENSPEMG00000019968	-	89	60.422	ENSATEG00000005843	upf3a	81	60.422	Anabas_testudineus
ENSPEMG00000019968	-	84	66.209	ENSACAG00000001540	UPF3A	88	66.209	Anolis_carolinensis
ENSPEMG00000019968	-	56	54.812	ENSANAG00000025598	-	80	41.053	Aotus_nancymaae
ENSPEMG00000019968	-	99	68.664	ENSANAG00000021713	UPF3A	91	69.124	Aotus_nancymaae
ENSPEMG00000019968	-	88	60.267	ENSAMXG00000002608	upf3a	82	60.267	Astyanax_mexicanus
ENSPEMG00000019968	-	95	69.324	ENSCJAG00000019102	UPF3A	91	69.585	Callithrix_jacchus
ENSPEMG00000019968	-	100	69.565	ENSCAFG00000006504	UPF3A	94	69.565	Canis_familiaris
ENSPEMG00000019968	-	100	70.023	ENSCAFG00020014268	UPF3A	91	70.023	Canis_lupus_dingo
ENSPEMG00000019968	-	99	65.820	ENSCHIG00000008682	UPF3A	86	66.359	Capra_hircus
ENSPEMG00000019968	-	74	66.972	ENSTSYG00000001918	UPF3A	87	66.972	Carlito_syrichta
ENSPEMG00000019968	-	89	70.876	ENSCPOG00000006824	UPF3A	90	70.876	Cavia_porcellus
ENSPEMG00000019968	-	99	70.737	ENSCCAG00000018406	UPF3A	91	71.198	Cebus_capucinus
ENSPEMG00000019968	-	99	72.471	ENSCATG00000029733	UPF3A	91	72.941	Cercocebus_atys
ENSPEMG00000019968	-	99	71.262	ENSCSAG00000017388	UPF3A	91	71.729	Chlorocebus_sabaeus
ENSPEMG00000019968	-	100	90.307	ENSCGRG00001017387	Upf3a	100	90.307	Cricetulus_griseus_chok1gshd
ENSPEMG00000019968	-	100	89.835	ENSCGRG00000001468	Upf3a	100	89.835	Cricetulus_griseus_crigri
ENSPEMG00000019968	-	54	63.025	ENSCSEG00000002046	upf3b	58	58.392	Cynoglossus_semilaevis
ENSPEMG00000019968	-	87	60.377	ENSCSEG00000005106	upf3a	80	60.377	Cynoglossus_semilaevis
ENSPEMG00000019968	-	87	59.946	ENSCVAG00000022333	upf3a	81	59.221	Cyprinodon_variegatus
ENSPEMG00000019968	-	87	58.108	ENSDARG00000069297	upf3a	81	58.424	Danio_rerio
ENSPEMG00000019968	-	56	60.400	ENSDARG00000000489	upf3b	84	48.500	Danio_rerio
ENSPEMG00000019968	-	93	68.675	ENSDNOG00000034391	UPF3A	98	68.664	Dasypus_novemcinctus
ENSPEMG00000019968	-	96	59.716	ENSETEG00000010110	UPF3A	91	59.817	Echinops_telfairi
ENSPEMG00000019968	-	99	70.507	ENSEASG00005021884	UPF3A	89	70.507	Equus_asinus_asinus
ENSPEMG00000019968	-	95	70.361	ENSECAG00000017141	UPF3A	89	70.276	Equus_caballus
ENSPEMG00000019968	-	84	61.453	ENSELUG00000011050	upf3a	75	61.453	Esox_lucius
ENSPEMG00000019968	-	95	69.952	ENSFCAG00000014602	UPF3A	91	69.885	Felis_catus
ENSPEMG00000019968	-	76	61.562	ENSGMOG00000019615	upf3a	100	61.562	Gadus_morhua
ENSPEMG00000019968	-	57	59.438	ENSGMOG00000001621	upf3b	52	59.438	Gadus_morhua
ENSPEMG00000019968	-	56	60.163	ENSGACG00000017435	upf3b	60	61.585	Gasterosteus_aculeatus
ENSPEMG00000019968	-	76	62.305	ENSGACG00000001972	upf3a	100	62.305	Gasterosteus_aculeatus
ENSPEMG00000019968	-	87	60.000	ENSGGOG00000041219	-	81	61.918	Gorilla_gorilla
ENSPEMG00000019968	-	99	71.429	ENSGGOG00000015428	UPF3A	91	71.889	Gorilla_gorilla
ENSPEMG00000019968	-	97	57.317	ENSGGOG00000043074	-	89	56.429	Gorilla_gorilla
ENSPEMG00000019968	-	89	72.149	ENSHGLG00000001544	UPF3A	90	71.654	Heterocephalus_glaber_female
ENSPEMG00000019968	-	89	72.149	ENSHGLG00100013244	UPF3A	90	71.654	Heterocephalus_glaber_male
ENSPEMG00000019968	-	57	62.195	ENSHCOG00000017004	upf3b	53	62.195	Hippocampus_comes
ENSPEMG00000019968	-	88	59.733	ENSIPUG00000023450	upf3a	82	59.733	Ictalurus_punctatus
ENSPEMG00000019968	-	56	61.943	ENSIPUG00000019249	upf3b	91	47.382	Ictalurus_punctatus
ENSPEMG00000019968	-	54	74.783	ENSSTOG00000030282	-	95	75.664	Ictidomys_tridecemlineatus
ENSPEMG00000019968	-	87	59.946	ENSKMAG00000004381	upf3a	80	59.946	Kryptolebias_marmoratus
ENSPEMG00000019968	-	87	55.172	ENSLBEG00000021570	upf3a	80	53.369	Labrus_bergylta
ENSPEMG00000019968	-	57	60.000	ENSLBEG00000028689	upf3b	54	59.761	Labrus_bergylta
ENSPEMG00000019968	-	86	59.733	ENSLOCG00000002665	upf3a	81	61.867	Lepisosteus_oculatus
ENSPEMG00000019968	-	56	63.710	ENSLOCG00000015238	upf3b	68	51.656	Lepisosteus_oculatus
ENSPEMG00000019968	-	77	59.053	ENSLAFG00000023358	UPF3A	84	58.475	Loxodonta_africana
ENSPEMG00000019968	-	99	68.287	ENSMFAG00000045016	UPF3A	91	68.287	Macaca_fascicularis
ENSPEMG00000019968	-	99	69.340	ENSMMUG00000007449	UPF3A	91	69.340	Macaca_mulatta
ENSPEMG00000019968	-	99	67.273	ENSMNEG00000036402	UPF3A	91	67.727	Macaca_nemestrina
ENSPEMG00000019968	-	90	71.018	ENSMLEG00000014726	UPF3A	88	71.204	Mandrillus_leucophaeus
ENSPEMG00000019968	-	87	61.290	ENSMAMG00000018364	upf3a	77	61.290	Mastacembelus_armatus
ENSPEMG00000019968	-	80	65.714	ENSMGAG00000014837	UPF3A	87	65.714	Meleagris_gallopavo
ENSPEMG00000019968	-	77	92.638	ENSMOCG00000000550	Upf3a	92	92.923	Microtus_ochrogaster
ENSPEMG00000019968	-	84	67.663	ENSMODG00000003159	UPF3A	86	67.663	Monodelphis_domestica
ENSPEMG00000019968	-	99	84.360	MGP_CAROLIEiJ_G0030848	Upf3a	99	84.360	Mus_caroli
ENSPEMG00000019968	-	99	85.545	ENSMUSG00000038398	Upf3a	99	85.545	Mus_musculus
ENSPEMG00000019968	-	99	85.308	MGP_PahariEiJ_G0021311	Upf3a	99	85.308	Mus_pahari
ENSPEMG00000019968	-	99	85.308	MGP_SPRETEiJ_G0031958	Upf3a	99	85.308	Mus_spretus
ENSPEMG00000019968	-	99	70.507	ENSMPUG00000009139	UPF3A	90	70.507	Mustela_putorius_furo
ENSPEMG00000019968	-	84	70.889	ENSMLUG00000015905	UPF3A	88	70.889	Myotis_lucifugus
ENSPEMG00000019968	-	100	82.979	ENSNGAG00000019314	Upf3a	100	82.979	Nannospalax_galili
ENSPEMG00000019968	-	99	71.264	ENSNLEG00000007563	UPF3A	91	71.494	Nomascus_leucogenys
ENSPEMG00000019968	-	51	76.606	ENSODEG00000009176	-	86	76.606	Octodon_degus
ENSPEMG00000019968	-	84	57.182	ENSOANG00000006985	-	96	57.182	Ornithorhynchus_anatinus
ENSPEMG00000019968	-	81	64.489	ENSOCUG00000008450	UPF3A	78	62.240	Oryctolagus_cuniculus
ENSPEMG00000019968	-	87	59.892	ENSORLG00000010911	upf3a	79	59.467	Oryzias_latipes
ENSPEMG00000019968	-	67	54.915	ENSORLG00000001026	upf3b	84	47.462	Oryzias_latipes
ENSPEMG00000019968	-	86	57.979	ENSORLG00020014317	upf3a	79	58.115	Oryzias_latipes_hni
ENSPEMG00000019968	-	67	55.254	ENSORLG00020003758	upf3b	84	47.716	Oryzias_latipes_hni
ENSPEMG00000019968	-	67	48.110	ENSORLG00015012954	upf3b	84	47.970	Oryzias_latipes_hsok
ENSPEMG00000019968	-	87	59.569	ENSOMEG00000014425	upf3a	80	59.151	Oryzias_melastigma
ENSPEMG00000019968	-	67	51.379	ENSOMEG00000014736	upf3b	63	56.187	Oryzias_melastigma
ENSPEMG00000019968	-	91	71.970	ENSOGAG00000004788	UPF3A	96	71.970	Otolemur_garnettii
ENSPEMG00000019968	-	97	66.274	ENSOARG00000009004	UPF3A	88	66.274	Ovis_aries
ENSPEMG00000019968	-	99	70.901	ENSPPAG00000042267	UPF3A	91	71.363	Pan_paniscus
ENSPEMG00000019968	-	95	69.952	ENSPPRG00000025062	UPF3A	91	69.885	Panthera_pardus
ENSPEMG00000019968	-	84	59.615	ENSPTRG00000041187	-	81	60.000	Pan_troglodytes
ENSPEMG00000019968	-	99	71.198	ENSPTRG00000006073	UPF3A	91	71.659	Pan_troglodytes
ENSPEMG00000019968	-	84	59.155	ENSPTRG00000041835	-	81	59.155	Pan_troglodytes
ENSPEMG00000019968	-	87	58.311	ENSPTRG00000051640	-	84	58.047	Pan_troglodytes
ENSPEMG00000019968	-	99	72.706	ENSPANG00000004346	UPF3A	91	72.706	Papio_anubis
ENSPEMG00000019968	-	92	58.145	ENSPKIG00000004422	upf3a	81	61.096	Paramormyrops_kingsleyae
ENSPEMG00000019968	-	56	62.249	ENSPKIG00000019226	upf3b	75	69.231	Paramormyrops_kingsleyae
ENSPEMG00000019968	-	84	66.393	ENSPSIG00000007468	UPF3A	89	66.393	Pelodiscus_sinensis
ENSPEMG00000019968	-	77	73.913	ENSPCIG00000019590	-	90	70.892	Phascolarctos_cinereus
ENSPEMG00000019968	-	82	46.049	ENSPCIG00000028914	UPF3B	88	42.823	Phascolarctos_cinereus
ENSPEMG00000019968	-	91	58.961	ENSPFOG00000013222	upf3a	81	58.961	Poecilia_formosa
ENSPEMG00000019968	-	91	58.031	ENSPLAG00000011960	upf3a	82	58.031	Poecilia_latipinna
ENSPEMG00000019968	-	91	59.173	ENSPMEG00000000836	upf3a	78	59.173	Poecilia_mexicana
ENSPEMG00000019968	-	99	70.968	ENSPPYG00000005536	UPF3A	91	71.429	Pongo_abelii
ENSPEMG00000019968	-	74	65.312	ENSPCAG00000013124	UPF3A	66	65.625	Procavia_capensis
ENSPEMG00000019968	-	99	65.668	ENSPVAG00000005656	UPF3A	91	66.129	Pteropus_vampyrus
ENSPEMG00000019968	-	88	59.626	ENSPNAG00000019532	upf3a	82	59.626	Pygocentrus_nattereri
ENSPEMG00000019968	-	56	61.847	ENSPNAG00000021528	upf3b	86	42.065	Pygocentrus_nattereri
ENSPEMG00000019968	-	94	88.131	ENSRNOG00000017397	Upf3a	97	88.131	Rattus_norvegicus
ENSPEMG00000019968	-	86	74.185	ENSRBIG00000034007	UPF3A	87	72.727	Rhinopithecus_bieti
ENSPEMG00000019968	-	84	74.719	ENSRROG00000012212	UPF3A	76	74.719	Rhinopithecus_roxellana
ENSPEMG00000019968	-	99	62.212	ENSSBOG00000029989	UPF3A	90	62.673	Saimiri_boliviensis_boliviensis
ENSPEMG00000019968	-	80	46.575	ENSSHAG00000008634	UPF3B	86	47.494	Sarcophilus_harrisii
ENSPEMG00000019968	-	86	66.755	ENSSHAG00000009895	UPF3A	90	66.755	Sarcophilus_harrisii
ENSPEMG00000019968	-	92	56.599	ENSSFOG00015021851	upf3a	83	56.599	Scleropages_formosus
ENSPEMG00000019968	-	58	64.567	ENSSFOG00015005614	upf3b	57	63.077	Scleropages_formosus
ENSPEMG00000019968	-	92	55.283	ENSSMAG00000003858	upf3a	79	73.504	Scophthalmus_maximus
ENSPEMG00000019968	-	60	60.526	ENSSMAG00000012913	upf3b	68	54.012	Scophthalmus_maximus
ENSPEMG00000019968	-	87	58.808	ENSSDUG00000009680	upf3a	77	60.811	Seriola_dumerili
ENSPEMG00000019968	-	86	58.696	ENSSLDG00000009700	upf3a	79	60.705	Seriola_lalandi_dorsalis
ENSPEMG00000019968	-	84	59.452	ENSSARG00000007262	UPF3A	89	55.616	Sorex_araneus
ENSPEMG00000019968	-	55	62.705	ENSSPAG00000009989	upf3b	84	49.231	Stegastes_partitus
ENSPEMG00000019968	-	99	67.512	ENSSSCG00000024679	UPF3A	87	67.512	Sus_scrofa
ENSPEMG00000019968	-	87	66.842	ENSTGUG00000009493	UPF3A	96	66.842	Taeniopygia_guttata
ENSPEMG00000019968	-	89	57.143	ENSTRUG00000012730	upf3a	82	57.143	Takifugu_rubripes
ENSPEMG00000019968	-	87	50.541	ENSTNIG00000014973	upf3a	95	49.606	Tetraodon_nigroviridis
ENSPEMG00000019968	-	68	63.973	ENSTBEG00000017186	-	94	63.973	Tupaia_belangeri
ENSPEMG00000019968	-	99	59.540	ENSTTRG00000015414	UPF3A	91	59.540	Tursiops_truncatus
ENSPEMG00000019968	-	84	69.863	ENSVPAG00000003525	UPF3A	89	69.863	Vicugna_pacos
ENSPEMG00000019968	-	100	67.506	ENSVVUG00000013538	UPF3A	83	70.773	Vulpes_vulpes
ENSPEMG00000019968	-	85	43.651	ENSXETG00000007440	upf3b	71	67.683	Xenopus_tropicalis
ENSPEMG00000019968	-	86	55.586	ENSXETG00000002572	upf3a	87	55.586	Xenopus_tropicalis
ENSPEMG00000019968	-	56	50.000	ENSXMAG00000013680	upf3b	84	47.826	Xiphophorus_maculatus
ENSPEMG00000019968	-	91	59.067	ENSXMAG00000013452	upf3a	81	59.067	Xiphophorus_maculatus