EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000019994 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Minus strand
Length: 2289 bases
Position: chrKI615891.1:471927-474215
Accession: 102905736
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000022710	LSM	PF01423.22	2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000027079	-	180	XM_015985775	ENSPEMP00000022710	59 (aa)	XP_015841261	-

Gene Model

Click here to download ENSPEMG00000019994's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000019994's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000019994	-	80	74.468	ENSPEMG00000022375	-	57	74.468

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000019994	-	100	87.500	ENSG00000106355	LSM5	100	87.500	Homo_sapiens
ENSPEMG00000019994	-	80	93.617	ENSAPOG00000020779	LSM5	55	93.617	Acanthochromis_polyacanthus
ENSPEMG00000019994	-	80	93.617	ENSAPOG00000011743	LSM5	53	93.617	Acanthochromis_polyacanthus
ENSPEMG00000019994	-	80	100.000	ENSAMEG00000006700	LSM5	52	100.000	Ailuropoda_melanoleuca
ENSPEMG00000019994	-	80	93.617	ENSAOCG00000001636	lsm5	52	93.617	Amphiprion_ocellaris
ENSPEMG00000019994	-	80	93.617	ENSAPEG00000008151	lsm5	52	93.617	Amphiprion_percula
ENSPEMG00000019994	-	80	100.000	ENSACAG00000009530	LSM5	78	100.000	Anolis_carolinensis
ENSPEMG00000019994	-	95	83.333	ENSANAG00000024192	-	90	83.333	Aotus_nancymaae
ENSPEMG00000019994	-	100	87.500	ENSANAG00000034409	-	100	87.500	Aotus_nancymaae
ENSPEMG00000019994	-	80	100.000	ENSBTAG00000002332	LSM5	52	100.000	Bos_taurus
ENSPEMG00000019994	-	97	73.684	ENSBTAG00000052014	-	75	73.684	Bos_taurus
ENSPEMG00000019994	-	80	70.213	WBGene00003079	lsm-5	52	70.213	Caenorhabditis_elegans
ENSPEMG00000019994	-	78	80.435	ENSCJAG00000005678	-	52	80.435	Callithrix_jacchus
ENSPEMG00000019994	-	100	87.500	ENSCJAG00000047379	LSM5	100	87.500	Callithrix_jacchus
ENSPEMG00000019994	-	97	85.965	ENSCAFG00000030781	-	66	85.965	Canis_familiaris
ENSPEMG00000019994	-	80	100.000	ENSCAFG00000019261	-	52	100.000	Canis_familiaris
ENSPEMG00000019994	-	80	100.000	ENSCAFG00020004946	LSM5	52	100.000	Canis_lupus_dingo
ENSPEMG00000019994	-	80	100.000	ENSCHIG00000004079	-	52	100.000	Capra_hircus
ENSPEMG00000019994	-	80	100.000	ENSCHIG00000024539	LSM5	52	100.000	Capra_hircus
ENSPEMG00000019994	-	78	73.913	ENSCHIG00000021428	-	52	73.913	Capra_hircus
ENSPEMG00000019994	-	100	87.500	ENSTSYG00000006449	-	100	87.500	Carlito_syrichta
ENSPEMG00000019994	-	80	93.617	ENSTSYG00000036637	-	64	93.617	Carlito_syrichta
ENSPEMG00000019994	-	100	96.610	ENSCPOG00000036386	LSM5	100	96.610	Cavia_porcellus
ENSPEMG00000019994	-	80	97.872	ENSCCAG00000000821	-	52	97.872	Cebus_capucinus
ENSPEMG00000019994	-	80	97.872	ENSCCAG00000032123	-	52	97.872	Cebus_capucinus
ENSPEMG00000019994	-	100	89.062	ENSCCAG00000037808	-	100	89.062	Cebus_capucinus
ENSPEMG00000019994	-	100	87.500	ENSCATG00000040218	LSM5	100	87.500	Cercocebus_atys
ENSPEMG00000019994	-	78	97.826	ENSCATG00000014790	-	79	97.826	Cercocebus_atys
ENSPEMG00000019994	-	100	94.915	ENSCLAG00000000202	LSM5	100	94.915	Chinchilla_lanigera
ENSPEMG00000019994	-	80	100.000	ENSCHOG00000005335	LSM5	62	100.000	Choloepus_hoffmanni
ENSPEMG00000019994	-	80	100.000	ENSCPBG00000013685	LSM5	52	100.000	Chrysemys_picta_bellii
ENSPEMG00000019994	-	100	87.500	ENSCANG00000039909	LSM5	100	87.500	Colobus_angolensis_palliatus
ENSPEMG00000019994	-	100	100.000	ENSCGRG00001015461	Lsm5	100	100.000	Cricetulus_griseus_chok1gshd
ENSPEMG00000019994	-	80	91.489	ENSCVAG00000004262	lsm5	52	91.489	Cyprinodon_variegatus
ENSPEMG00000019994	-	80	91.489	ENSDARG00000071573	lsm5	52	91.489	Danio_rerio
ENSPEMG00000019994	-	80	89.362	ENSDNOG00000049495	-	52	89.362	Dasypus_novemcinctus
ENSPEMG00000019994	-	80	100.000	ENSDNOG00000034958	LSM5	53	100.000	Dasypus_novemcinctus
ENSPEMG00000019994	-	80	100.000	ENSDORG00000009422	Lsm5	52	100.000	Dipodomys_ordii
ENSPEMG00000019994	-	78	76.087	FBgn0035675	CG6610	51	76.087	Drosophila_melanogaster
ENSPEMG00000019994	-	78	82.609	ENSETEG00000001469	-	58	82.609	Echinops_telfairi
ENSPEMG00000019994	-	80	100.000	ENSETEG00000018068	LSM5	52	100.000	Echinops_telfairi
ENSPEMG00000019994	-	80	85.106	ENSETEG00000010651	-	57	85.106	Echinops_telfairi
ENSPEMG00000019994	-	80	91.489	ENSEBUG00000008540	lsm5	52	91.489	Eptatretus_burgeri
ENSPEMG00000019994	-	80	100.000	ENSEASG00005003500	LSM5	52	100.000	Equus_asinus_asinus
ENSPEMG00000019994	-	80	100.000	ENSECAG00000018445	LSM5	57	100.000	Equus_caballus
ENSPEMG00000019994	-	80	91.489	ENSELUG00000007792	lsm5	52	91.489	Esox_lucius
ENSPEMG00000019994	-	100	85.938	ENSFCAG00000000230	LSM5	100	85.938	Felis_catus
ENSPEMG00000019994	-	100	93.220	ENSFDAG00000008767	LSM5	100	93.220	Fukomys_damarensis
ENSPEMG00000019994	-	78	71.739	ENSFDAG00000008685	-	53	71.739	Fukomys_damarensis
ENSPEMG00000019994	-	90	69.811	ENSFHEG00000004011	lsm5	58	69.811	Fundulus_heteroclitus
ENSPEMG00000019994	-	80	91.489	ENSGMOG00000018235	lsm5	52	91.489	Gadus_morhua
ENSPEMG00000019994	-	80	97.872	ENSGALG00000041625	LSM5	52	97.872	Gallus_gallus
ENSPEMG00000019994	-	80	93.617	ENSGACG00000005528	lsm5	52	93.617	Gasterosteus_aculeatus
ENSPEMG00000019994	-	80	100.000	ENSGAGG00000015593	LSM5	52	100.000	Gopherus_agassizii
ENSPEMG00000019994	-	100	87.500	ENSGGOG00000043469	LSM5	100	87.500	Gorilla_gorilla
ENSPEMG00000019994	-	100	94.915	ENSHGLG00000011765	LSM5	100	94.915	Heterocephalus_glaber_female
ENSPEMG00000019994	-	100	89.831	ENSHGLG00100015610	LSM5	100	89.831	Heterocephalus_glaber_male
ENSPEMG00000019994	-	80	89.362	ENSIPUG00000021095	LSM5	52	89.362	Ictalurus_punctatus
ENSPEMG00000019994	-	100	94.915	ENSSTOG00000012662	LSM5	100	94.915	Ictidomys_tridecemlineatus
ENSPEMG00000019994	-	80	89.362	ENSJJAG00000004475	-	59	89.362	Jaculus_jaculus
ENSPEMG00000019994	-	80	95.745	ENSJJAG00000012145	-	52	95.745	Jaculus_jaculus
ENSPEMG00000019994	-	80	93.617	ENSKMAG00000021861	lsm5	52	93.617	Kryptolebias_marmoratus
ENSPEMG00000019994	-	80	91.489	ENSLBEG00000017379	lsm5	77	91.489	Labrus_bergylta
ENSPEMG00000019994	-	80	95.745	ENSLACG00000022448	LSM5	52	95.745	Latimeria_chalumnae
ENSPEMG00000019994	-	80	91.489	ENSLOCG00000012903	lsm5	52	91.489	Lepisosteus_oculatus
ENSPEMG00000019994	-	80	100.000	ENSLAFG00000029579	LSM5	52	100.000	Loxodonta_africana
ENSPEMG00000019994	-	100	87.500	ENSMFAG00000038508	LSM5	100	87.500	Macaca_fascicularis
ENSPEMG00000019994	-	98	86.207	ENSMFAG00000031187	-	92	86.207	Macaca_fascicularis
ENSPEMG00000019994	-	80	95.745	ENSMFAG00000030152	-	52	95.745	Macaca_fascicularis
ENSPEMG00000019994	-	80	95.745	ENSMMUG00000030131	-	52	95.745	Macaca_mulatta
ENSPEMG00000019994	-	100	87.500	ENSMMUG00000045129	-	100	87.500	Macaca_mulatta
ENSPEMG00000019994	-	78	97.826	ENSMMUG00000039822	-	56	97.826	Macaca_mulatta
ENSPEMG00000019994	-	100	83.333	ENSMNEG00000015331	LSM5	100	83.333	Macaca_nemestrina
ENSPEMG00000019994	-	80	95.745	ENSMNEG00000037935	-	52	95.745	Macaca_nemestrina
ENSPEMG00000019994	-	100	87.500	ENSMLEG00000024945	LSM5	100	87.500	Mandrillus_leucophaeus
ENSPEMG00000019994	-	97	85.000	ENSMLEG00000034037	-	100	85.000	Mandrillus_leucophaeus
ENSPEMG00000019994	-	80	91.489	ENSMAMG00000012869	lsm5	52	91.489	Mastacembelus_armatus
ENSPEMG00000019994	-	80	97.872	ENSMGAG00000012117	LSM5	52	97.872	Meleagris_gallopavo
ENSPEMG00000019994	-	80	97.872	ENSMAUG00000008132	-	52	97.872	Mesocricetus_auratus
ENSPEMG00000019994	-	100	100.000	ENSMAUG00000012222	Lsm5	100	100.000	Mesocricetus_auratus
ENSPEMG00000019994	-	100	85.938	ENSMICG00000005353	LSM5	100	85.938	Microcebus_murinus
ENSPEMG00000019994	-	100	100.000	ENSMOCG00000012018	Lsm5	100	100.000	Microtus_ochrogaster
ENSPEMG00000019994	-	80	100.000	MGP_CAROLIEiJ_G0028421	Lsm5	100	100.000	Mus_caroli
ENSPEMG00000019994	-	100	98.305	ENSMUSG00000091625	Lsm5	100	100.000	Mus_musculus
ENSPEMG00000019994	-	80	100.000	MGP_PahariEiJ_G0022171	Lsm5	100	100.000	Mus_pahari
ENSPEMG00000019994	-	80	100.000	MGP_SPRETEiJ_G0029423	Lsm5	100	100.000	Mus_spretus
ENSPEMG00000019994	-	80	100.000	ENSMLUG00000017028	LSM5	52	100.000	Myotis_lucifugus
ENSPEMG00000019994	-	100	98.305	ENSNGAG00000024142	Lsm5	100	98.305	Nannospalax_galili
ENSPEMG00000019994	-	88	58.491	ENSNGAG00000022569	-	64	58.491	Nannospalax_galili
ENSPEMG00000019994	-	73	93.023	ENSNBRG00000009964	LSM5	91	93.023	Neolamprologus_brichardi
ENSPEMG00000019994	-	100	87.500	ENSNLEG00000015268	LSM5	100	87.500	Nomascus_leucogenys
ENSPEMG00000019994	-	80	100.000	ENSODEG00000008258	-	52	100.000	Octodon_degus
ENSPEMG00000019994	-	80	100.000	ENSODEG00000019072	-	52	100.000	Octodon_degus
ENSPEMG00000019994	-	80	100.000	ENSOCUG00000029043	LSM5	52	100.000	Oryctolagus_cuniculus
ENSPEMG00000019994	-	80	91.489	ENSORLG00015003338	lsm5	52	91.489	Oryzias_latipes_hsok
ENSPEMG00000019994	-	80	89.362	ENSOMEG00000001078	lsm5	52	89.362	Oryzias_melastigma
ENSPEMG00000019994	-	80	100.000	ENSOGAG00000013892	LSM5	52	100.000	Otolemur_garnettii
ENSPEMG00000019994	-	80	100.000	ENSOARG00000006944	LSM5	52	100.000	Ovis_aries
ENSPEMG00000019994	-	100	87.500	ENSPPAG00000003697	-	100	87.500	Pan_paniscus
ENSPEMG00000019994	-	100	85.938	ENSPPRG00000002550	LSM5	100	85.938	Panthera_pardus
ENSPEMG00000019994	-	100	85.938	ENSPTIG00000015604	LSM5	100	85.938	Panthera_tigris_altaica
ENSPEMG00000019994	-	80	100.000	ENSPTRG00000019057	LSM5	52	100.000	Pan_troglodytes
ENSPEMG00000019994	-	80	100.000	ENSPTRG00000049488	-	67	84.483	Pan_troglodytes
ENSPEMG00000019994	-	80	93.617	ENSPANG00000033477	-	52	93.617	Papio_anubis
ENSPEMG00000019994	-	78	97.826	ENSPANG00000032538	-	56	97.826	Papio_anubis
ENSPEMG00000019994	-	100	87.500	ENSPANG00000032179	-	100	87.500	Papio_anubis
ENSPEMG00000019994	-	80	91.489	ENSPKIG00000011910	lsm5	52	91.489	Paramormyrops_kingsleyae
ENSPEMG00000019994	-	80	91.489	ENSPFOG00000001433	lsm5	52	91.489	Poecilia_formosa
ENSPEMG00000019994	-	88	84.615	ENSPLAG00000009665	lsm5	52	91.489	Poecilia_latipinna
ENSPEMG00000019994	-	80	91.489	ENSPMEG00000022265	lsm5	52	91.489	Poecilia_mexicana
ENSPEMG00000019994	-	80	100.000	ENSPPYG00000017661	LSM5	52	100.000	Pongo_abelii
ENSPEMG00000019994	-	80	100.000	ENSPCAG00000013740	LSM5	58	100.000	Procavia_capensis
ENSPEMG00000019994	-	80	100.000	ENSPVAG00000009786	LSM5	52	100.000	Pteropus_vampyrus
ENSPEMG00000019994	-	80	89.362	ENSPNAG00000001887	lsm5	52	89.362	Pygocentrus_nattereri
ENSPEMG00000019994	-	80	91.667	ENSRNOG00000027305	AABR07065089.1	52	91.667	Rattus_norvegicus
ENSPEMG00000019994	-	80	100.000	ENSRNOG00000042126	Lsm5	52	100.000	Rattus_norvegicus
ENSPEMG00000019994	-	80	100.000	ENSRBIG00000030340	-	52	100.000	Rhinopithecus_bieti
ENSPEMG00000019994	-	100	86.154	ENSRBIG00000027803	-	100	86.154	Rhinopithecus_bieti
ENSPEMG00000019994	-	80	100.000	ENSRBIG00000030714	-	52	100.000	Rhinopithecus_bieti
ENSPEMG00000019994	-	80	100.000	ENSRBIG00000024431	-	52	100.000	Rhinopithecus_bieti
ENSPEMG00000019994	-	100	86.154	ENSRROG00000042782	-	100	86.154	Rhinopithecus_roxellana
ENSPEMG00000019994	-	80	100.000	ENSRROG00000004655	-	52	100.000	Rhinopithecus_roxellana
ENSPEMG00000019994	-	80	100.000	ENSRROG00000023884	-	52	100.000	Rhinopithecus_roxellana
ENSPEMG00000019994	-	100	89.062	ENSSBOG00000012312	LSM5	100	89.062	Saimiri_boliviensis_boliviensis
ENSPEMG00000019994	-	80	97.872	ENSSBOG00000019124	-	52	97.872	Saimiri_boliviensis_boliviensis
ENSPEMG00000019994	-	80	91.489	ENSSFOG00015010099	lsm5	52	91.489	Scleropages_formosus
ENSPEMG00000019994	-	80	91.489	ENSSLDG00000025242	lsm5	52	91.489	Seriola_lalandi_dorsalis
ENSPEMG00000019994	-	80	97.872	ENSSARG00000003330	LSM5	52	97.872	Sorex_araneus
ENSPEMG00000019994	-	80	95.745	ENSSPUG00000002690	LSM5	52	95.745	Sphenodon_punctatus
ENSPEMG00000019994	-	80	100.000	ENSSSCG00000026064	-	52	100.000	Sus_scrofa
ENSPEMG00000019994	-	80	91.489	ENSSSCG00000029661	-	65	91.489	Sus_scrofa
ENSPEMG00000019994	-	80	93.617	ENSTGUG00000017539	LSM5	52	93.617	Taeniopygia_guttata
ENSPEMG00000019994	-	80	100.000	ENSTBEG00000004876	LSM5	52	100.000	Tupaia_belangeri
ENSPEMG00000019994	-	80	100.000	ENSTTRG00000004237	LSM5	52	100.000	Tursiops_truncatus
ENSPEMG00000019994	-	97	85.965	ENSUAMG00000009786	LSM5	74	85.965	Ursus_americanus
ENSPEMG00000019994	-	80	100.000	ENSVPAG00000009985	LSM5	52	100.000	Vicugna_pacos
ENSPEMG00000019994	-	80	100.000	ENSVVUG00000021311	LSM5	52	100.000	Vulpes_vulpes
ENSPEMG00000019994	-	80	93.617	ENSXETG00000026465	lsm5	57	93.617	Xenopus_tropicalis
ENSPEMG00000019994	-	88	84.615	ENSXMAG00000029988	lsm5	52	91.489	Xiphophorus_maculatus