EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000020428 (Gene tree)
Gene ID: 102908668
Gene Symbol: Safb
Alias: -
Full Name: scaffold attachment factor B
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 27096 bases
Position: chrKI615491.1:1079589-1106684
Accession: 102908668
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000023374	RRM_5	PF13893.6	3.7e-06	1	1
ENSPEMP00000023374	RRM_1	PF00076.22	1.6e-12	1	1
ENSPEMP00000023374	SAP	PF02037.27	3.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000027746	-	2811	XM_006982260	ENSPEMP00000023374	936 (aa)	XP_006982322	-

Gene Model

Click here to download ENSPEMG00000020428's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000020428's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000020428	Safb	100	60.500	ENSPEMG00000016015	Safb2	64	66.202

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000020428	Safb	100	84.632	ENSG00000160633	SAFB	100	84.632	Homo_sapiens
ENSPEMG00000020428	Safb	100	83.919	ENSAMEG00000012254	SAFB	98	83.716	Ailuropoda_melanoleuca
ENSPEMG00000020428	Safb	94	61.556	ENSAPLG00000005780	-	100	60.158	Anas_platyrhynchos
ENSPEMG00000020428	Safb	90	59.302	ENSAPLG00000006355	-	65	55.208	Anas_platyrhynchos
ENSPEMG00000020428	Safb	100	84.418	ENSANAG00000028821	SAFB	100	84.418	Aotus_nancymaae
ENSPEMG00000020428	Safb	100	81.537	ENSBTAG00000007875	SAFB	100	81.537	Bos_taurus
ENSPEMG00000020428	Safb	81	86.933	ENSCJAG00000017081	SAFB	100	89.777	Callithrix_jacchus
ENSPEMG00000020428	Safb	100	84.845	ENSCAFG00000018803	SAFB	87	84.845	Canis_familiaris
ENSPEMG00000020428	Safb	100	84.845	ENSCAFG00020018943	SAFB	100	84.845	Canis_lupus_dingo
ENSPEMG00000020428	Safb	100	80.790	ENSCHIG00000007262	SAFB	100	80.790	Capra_hircus
ENSPEMG00000020428	Safb	57	75.468	ENSTSYG00000001851	-	100	72.294	Carlito_syrichta
ENSPEMG00000020428	Safb	93	79.899	ENSCAPG00000012121	SAFB	100	80.532	Cavia_aperea
ENSPEMG00000020428	Safb	100	84.884	ENSCPOG00000026322	SAFB	100	84.672	Cavia_porcellus
ENSPEMG00000020428	Safb	100	84.542	ENSCCAG00000020193	SAFB	100	84.115	Cebus_capucinus
ENSPEMG00000020428	Safb	100	84.525	ENSCATG00000029994	SAFB	100	84.525	Cercocebus_atys
ENSPEMG00000020428	Safb	100	84.713	ENSCLAG00000007734	SAFB	100	86.200	Chinchilla_lanigera
ENSPEMG00000020428	Safb	100	84.418	ENSCSAG00000009949	SAFB	100	84.418	Chlorocebus_sabaeus
ENSPEMG00000020428	Safb	87	97.619	ENSCHOG00000003208	SAFB	93	97.619	Choloepus_hoffmanni
ENSPEMG00000020428	Safb	92	60.805	ENSCPBG00000010928	-	64	55.893	Chrysemys_picta_bellii
ENSPEMG00000020428	Safb	91	57.412	ENSCPBG00000010936	-	63	54.452	Chrysemys_picta_bellii
ENSPEMG00000020428	Safb	100	79.082	ENSCANG00000019754	-	100	79.082	Colobus_angolensis_palliatus
ENSPEMG00000020428	Safb	96	91.542	ENSCANG00000004774	-	99	91.542	Colobus_angolensis_palliatus
ENSPEMG00000020428	Safb	100	96.802	ENSCGRG00001002254	Safb	100	96.802	Cricetulus_griseus_chok1gshd
ENSPEMG00000020428	Safb	92	93.228	ENSCGRG00000011529	Safb	97	93.228	Cricetulus_griseus_crigri
ENSPEMG00000020428	Safb	72	48.106	ENSCSEG00000019870	safb	51	53.571	Cynoglossus_semilaevis
ENSPEMG00000020428	Safb	89	41.524	ENSDARG00000020467	safb	60	60.000	Danio_rerio
ENSPEMG00000020428	Safb	100	82.623	ENSDNOG00000015746	SAFB	95	81.037	Dasypus_novemcinctus
ENSPEMG00000020428	Safb	100	81.309	ENSDORG00000016200	Safb	100	80.927	Dipodomys_ordii
ENSPEMG00000020428	Safb	73	85.714	ENSETEG00000018679	SAFB	75	85.714	Echinops_telfairi
ENSPEMG00000020428	Safb	100	83.970	ENSEASG00005023019	SAFB	100	83.227	Equus_asinus_asinus
ENSPEMG00000020428	Safb	100	85.272	ENSECAG00000018659	SAFB	89	85.379	Equus_caballus
ENSPEMG00000020428	Safb	96	40.150	ENSELUG00000022327	safb	57	55.645	Esox_lucius
ENSPEMG00000020428	Safb	100	85.256	ENSFCAG00000011835	SAFB	100	85.256	Felis_catus
ENSPEMG00000020428	Safb	91	54.967	ENSFALG00000013881	-	64	54.717	Ficedula_albicollis
ENSPEMG00000020428	Safb	100	62.000	ENSFALG00000013882	-	89	61.413	Ficedula_albicollis
ENSPEMG00000020428	Safb	100	76.500	ENSFDAG00000020306	SAFB	99	83.203	Fukomys_damarensis
ENSPEMG00000020428	Safb	100	61.920	ENSGALG00000013365	-	97	61.111	Gallus_gallus
ENSPEMG00000020428	Safb	96	59.197	ENSGAGG00000008424	-	67	56.338	Gopherus_agassizii
ENSPEMG00000020428	Safb	100	84.418	ENSGGOG00000015109	SAFB	100	84.418	Gorilla_gorilla
ENSPEMG00000020428	Safb	100	87.114	ENSHGLG00000015883	SAFB	100	87.114	Heterocephalus_glaber_female
ENSPEMG00000020428	Safb	95	43.445	ENSIPUG00000024869	safb2	63	44.590	Ictalurus_punctatus
ENSPEMG00000020428	Safb	93	88.229	ENSSTOG00000002783	SAFB	100	88.229	Ictidomys_tridecemlineatus
ENSPEMG00000020428	Safb	100	88.136	ENSJJAG00000009021	Safb	98	89.239	Jaculus_jaculus
ENSPEMG00000020428	Safb	65	48.598	ENSLACG00000018090	SAFB	66	49.609	Latimeria_chalumnae
ENSPEMG00000020428	Safb	97	45.750	ENSLOCG00000003613	safb	74	44.512	Lepisosteus_oculatus
ENSPEMG00000020428	Safb	99	82.227	ENSLAFG00000003840	SAFB	100	81.156	Loxodonta_africana
ENSPEMG00000020428	Safb	100	84.435	ENSMFAG00000003885	SAFB	100	84.009	Macaca_fascicularis
ENSPEMG00000020428	Safb	100	84.525	ENSMMUG00000017970	SAFB	100	84.525	Macaca_mulatta
ENSPEMG00000020428	Safb	100	81.130	ENSMNEG00000035637	SAFB	100	80.213	Macaca_nemestrina
ENSPEMG00000020428	Safb	100	79.384	ENSMLEG00000038637	SAFB	100	78.023	Mandrillus_leucophaeus
ENSPEMG00000020428	Safb	82	56.303	ENSMZEG00005009120	safb	65	41.242	Maylandia_zebra
ENSPEMG00000020428	Safb	97	60.196	ENSMGAG00000001101	-	100	58.696	Meleagris_gallopavo
ENSPEMG00000020428	Safb	89	56.690	ENSMGAG00000001051	-	97	58.859	Meleagris_gallopavo
ENSPEMG00000020428	Safb	52	98.560	ENSMAUG00000005013	Safb	100	98.560	Mesocricetus_auratus
ENSPEMG00000020428	Safb	100	81.343	ENSMICG00000008739	-	100	80.171	Microcebus_murinus
ENSPEMG00000020428	Safb	85	71.125	ENSMICG00000046795	-	98	86.170	Microcebus_murinus
ENSPEMG00000020428	Safb	100	96.375	ENSMOCG00000014040	Safb	100	96.375	Microtus_ochrogaster
ENSPEMG00000020428	Safb	100	68.958	ENSMODG00000001236	SAFB	98	69.551	Monodelphis_domestica
ENSPEMG00000020428	Safb	100	95.314	MGP_CAROLIEiJ_G0021780	Safb	100	95.314	Mus_caroli
ENSPEMG00000020428	Safb	100	94.888	ENSMUSG00000071054	Safb	100	95.421	Mus_musculus
ENSPEMG00000020428	Safb	100	95.532	MGP_PahariEiJ_G0020769	Safb	100	95.426	Mus_pahari
ENSPEMG00000020428	Safb	100	84.739	ENSMPUG00000006123	SAFB	94	84.739	Mustela_putorius_furo
ENSPEMG00000020428	Safb	100	83.778	ENSMLUG00000001081	SAFB	100	83.778	Myotis_lucifugus
ENSPEMG00000020428	Safb	100	89.172	ENSNGAG00000019882	Safb	100	89.172	Nannospalax_galili
ENSPEMG00000020428	Safb	99	81.548	ENSNLEG00000013551	SAFB	100	83.982	Nomascus_leucogenys
ENSPEMG00000020428	Safb	89	79.472	ENSOPRG00000011561	-	100	80.072	Ochotona_princeps
ENSPEMG00000020428	Safb	100	87.261	ENSODEG00000014838	SAFB	100	87.261	Octodon_degus
ENSPEMG00000020428	Safb	90	76.588	ENSOCUG00000014628	SAFB	63	77.716	Oryctolagus_cuniculus
ENSPEMG00000020428	Safb	78	49.234	ENSORLG00020000404	safb	51	54.472	Oryzias_latipes_hni
ENSPEMG00000020428	Safb	100	79.512	ENSOGAG00000027769	SAFB	100	78.875	Otolemur_garnettii
ENSPEMG00000020428	Safb	100	77.908	ENSOARG00000007662	-	100	75.987	Ovis_aries
ENSPEMG00000020428	Safb	78	73.842	ENSOARG00000007856	-	100	73.569	Ovis_aries
ENSPEMG00000020428	Safb	100	84.435	ENSPPAG00000035129	SAFB	100	84.009	Pan_paniscus
ENSPEMG00000020428	Safb	100	85.256	ENSPPRG00000017197	SAFB	100	85.256	Panthera_pardus
ENSPEMG00000020428	Safb	100	84.435	ENSPTRG00000010335	SAFB	100	84.009	Pan_troglodytes
ENSPEMG00000020428	Safb	100	84.328	ENSPANG00000007770	SAFB	100	83.902	Papio_anubis
ENSPEMG00000020428	Safb	99	58.204	ENSPSIG00000009367	-	63	55.897	Pelodiscus_sinensis
ENSPEMG00000020428	Safb	100	58.617	ENSPSIG00000011679	-	64	56.314	Pelodiscus_sinensis
ENSPEMG00000020428	Safb	57	79.151	ENSPCIG00000009504	-	99	79.559	Phascolarctos_cinereus
ENSPEMG00000020428	Safb	100	84.632	ENSPPYG00000009428	SAFB	100	84.632	Pongo_abelii
ENSPEMG00000020428	Safb	100	78.442	ENSPCAG00000006475	SAFB	100	78.335	Procavia_capensis
ENSPEMG00000020428	Safb	100	78.215	ENSPCOG00000014090	SAFB	100	76.866	Propithecus_coquereli
ENSPEMG00000020428	Safb	100	77.801	ENSPVAG00000004913	SAFB	100	78.122	Pteropus_vampyrus
ENSPEMG00000020428	Safb	100	93.631	ENSRNOG00000050543	Safb	100	93.843	Rattus_norvegicus
ENSPEMG00000020428	Safb	100	79.851	ENSRBIG00000042509	SAFB	100	76.978	Rhinopithecus_bieti
ENSPEMG00000020428	Safb	100	84.435	ENSRROG00000029278	SAFB	100	84.009	Rhinopithecus_roxellana
ENSPEMG00000020428	Safb	100	84.632	ENSSBOG00000026291	SAFB	100	84.632	Saimiri_boliviensis_boliviensis
ENSPEMG00000020428	Safb	93	78.653	ENSSARG00000010475	SAFB	100	78.539	Sorex_araneus
ENSPEMG00000020428	Safb	59	50.454	ENSSPUG00000009747	-	67	50.092	Sphenodon_punctatus
ENSPEMG00000020428	Safb	54	49.907	ENSSPUG00000009820	-	64	51.673	Sphenodon_punctatus
ENSPEMG00000020428	Safb	100	83.650	ENSSSCG00000013522	SAFB	99	83.563	Sus_scrofa
ENSPEMG00000020428	Safb	96	60.679	ENSTGUG00000000502	-	97	60.767	Taeniopygia_guttata
ENSPEMG00000020428	Safb	75	86.364	ENSTBEG00000013124	-	66	89.394	Tupaia_belangeri
ENSPEMG00000020428	Safb	92	92.063	ENSTTRG00000013588	SAFB	92	92.063	Tursiops_truncatus
ENSPEMG00000020428	Safb	78	84.699	ENSUAMG00000024543	SAFB	99	84.815	Ursus_americanus
ENSPEMG00000020428	Safb	83	90.780	ENSUMAG00000009734	SAFB	88	90.780	Ursus_maritimus
ENSPEMG00000020428	Safb	72	90.769	ENSVPAG00000012043	SAFB	78	90.769	Vicugna_pacos
ENSPEMG00000020428	Safb	100	84.845	ENSVVUG00000013720	SAFB	87	84.845	Vulpes_vulpes
ENSPEMG00000020428	Safb	66	47.687	ENSXETG00000008755	safb	64	69.318	Xenopus_tropicalis