EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPEMG00000020610 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Minus strand
Length: 68533 bases
Position: chrKI615372.1:5582651-5651183
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000023626	XRN_N	PF03159.18	1.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000028000	-	2910	-	ENSPEMP00000023626	969 (aa)	-	-

Gene Model

Click here to download ENSPEMG00000020610's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000020610's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPEMG00000020610	Xrn1	61	38.563	ENSPEMG00000000111	Xrn2	71	38.767

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000020610	Xrn1	99	95.404	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSPEMG00000020610	Xrn1	99	78.730	ENSAPOG00000000622	xrn1	93	77.399	Acanthochromis_polyacanthus
ENSPEMG00000020610	Xrn1	99	95.246	ENSAMEG00000012538	XRN1	56	95.246	Ailuropoda_melanoleuca
ENSPEMG00000020610	Xrn1	99	78.288	ENSACIG00000001057	xrn1	60	78.605	Amphilophus_citrinellus
ENSPEMG00000020610	Xrn1	99	78.855	ENSAOCG00000014097	xrn1	95	69.076	Amphiprion_ocellaris
ENSPEMG00000020610	Xrn1	99	78.855	ENSAPEG00000006620	xrn1	62	77.742	Amphiprion_percula
ENSPEMG00000020610	Xrn1	99	76.274	ENSATEG00000009752	xrn1	61	76.349	Anabas_testudineus
ENSPEMG00000020610	Xrn1	96	88.411	ENSAPLG00000004905	XRN1	56	88.411	Anas_platyrhynchos
ENSPEMG00000020610	Xrn1	99	85.556	ENSACAG00000004985	XRN1	54	84.335	Anolis_carolinensis
ENSPEMG00000020610	Xrn1	99	96.184	ENSANAG00000029013	XRN1	86	96.184	Aotus_nancymaae
ENSPEMG00000020610	Xrn1	99	77.496	ENSACLG00000004806	xrn1	57	77.848	Astatotilapia_calliptera
ENSPEMG00000020610	Xrn1	99	73.810	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSPEMG00000020610	Xrn1	99	94.453	ENSBTAG00000011524	XRN1	57	94.453	Bos_taurus
ENSPEMG00000020610	Xrn1	93	52.782	WBGene00012730	xrn-1	62	51.802	Caenorhabditis_elegans
ENSPEMG00000020610	Xrn1	99	95.563	ENSCJAG00000001872	XRN1	60	95.563	Callithrix_jacchus
ENSPEMG00000020610	Xrn1	99	95.404	ENSCAFG00000007783	XRN1	56	95.404	Canis_familiaris
ENSPEMG00000020610	Xrn1	99	95.404	ENSCAFG00020009120	XRN1	99	92.784	Canis_lupus_dingo
ENSPEMG00000020610	Xrn1	99	94.770	ENSCHIG00000019192	XRN1	56	94.770	Capra_hircus
ENSPEMG00000020610	Xrn1	99	95.563	ENSTSYG00000002705	XRN1	58	95.563	Carlito_syrichta
ENSPEMG00000020610	Xrn1	97	72.275	ENSCAPG00000004604	-	100	72.275	Cavia_aperea
ENSPEMG00000020610	Xrn1	100	95.459	ENSCCAG00000034800	XRN1	100	95.459	Cebus_capucinus
ENSPEMG00000020610	Xrn1	99	96.038	ENSCATG00000041794	XRN1	58	96.038	Cercocebus_atys
ENSPEMG00000020610	Xrn1	99	95.246	ENSCLAG00000001451	XRN1	100	94.221	Chinchilla_lanigera
ENSPEMG00000020610	Xrn1	99	96.038	ENSCSAG00000011265	XRN1	57	96.038	Chlorocebus_sabaeus
ENSPEMG00000020610	Xrn1	84	61.197	ENSCSAVG00000008584	-	62	61.026	Ciona_savignyi
ENSPEMG00000020610	Xrn1	100	95.356	ENSCANG00000037495	XRN1	100	95.356	Colobus_angolensis_palliatus
ENSPEMG00000020610	Xrn1	100	98.142	ENSCGRG00001019411	Xrn1	100	98.142	Cricetulus_griseus_chok1gshd
ENSPEMG00000020610	Xrn1	100	98.142	ENSCGRG00000012464	Xrn1	100	98.142	Cricetulus_griseus_crigri
ENSPEMG00000020610	Xrn1	99	77.937	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSPEMG00000020610	Xrn1	99	76.312	ENSCVAG00000013089	xrn1	85	76.312	Cyprinodon_variegatus
ENSPEMG00000020610	Xrn1	99	79.081	ENSDARG00000091652	xrn1	98	80.169	Danio_rerio
ENSPEMG00000020610	Xrn1	99	95.072	ENSDORG00000013833	Xrn1	57	95.072	Dipodomys_ordii
ENSPEMG00000020610	Xrn1	92	55.630	FBgn0020261	pcm	53	55.294	Drosophila_melanogaster
ENSPEMG00000020610	Xrn1	100	94.943	ENSEASG00005002687	XRN1	100	94.943	Equus_asinus_asinus
ENSPEMG00000020610	Xrn1	99	95.880	ENSECAG00000008301	XRN1	57	95.880	Equus_caballus
ENSPEMG00000020610	Xrn1	99	78.481	ENSELUG00000000169	xrn1	56	78.639	Esox_lucius
ENSPEMG00000020610	Xrn1	99	91.916	ENSFCAG00000027589	XRN1	99	95.165	Felis_catus
ENSPEMG00000020610	Xrn1	99	87.758	ENSFALG00000007021	XRN1	55	88.076	Ficedula_albicollis
ENSPEMG00000020610	Xrn1	100	93.808	ENSFDAG00000020494	XRN1	100	93.808	Fukomys_damarensis
ENSPEMG00000020610	Xrn1	50	70.270	ENSFHEG00000017356	-	98	69.231	Fundulus_heteroclitus
ENSPEMG00000020610	Xrn1	99	76.312	ENSGMOG00000006396	xrn1	57	76.312	Gadus_morhua
ENSPEMG00000020610	Xrn1	99	88.235	ENSGALG00000002706	XRN1	55	88.235	Gallus_gallus
ENSPEMG00000020610	Xrn1	99	76.984	ENSGACG00000014328	xrn1	56	76.582	Gasterosteus_aculeatus
ENSPEMG00000020610	Xrn1	99	86.825	ENSGAGG00000017535	XRN1	58	86.825	Gopherus_agassizii
ENSPEMG00000020610	Xrn1	99	95.563	ENSGGOG00000008047	XRN1	58	95.563	Gorilla_gorilla
ENSPEMG00000020610	Xrn1	99	75.594	ENSHBUG00000005908	xrn1	98	73.101	Haplochromis_burtoni
ENSPEMG00000020610	Xrn1	99	95.246	ENSHGLG00000014476	XRN1	99	94.513	Heterocephalus_glaber_female
ENSPEMG00000020610	Xrn1	99	95.246	ENSHGLG00100015130	XRN1	99	94.513	Heterocephalus_glaber_male
ENSPEMG00000020610	Xrn1	99	76.615	ENSHCOG00000014062	xrn1	62	76.462	Hippocampus_comes
ENSPEMG00000020610	Xrn1	99	79.524	ENSIPUG00000015229	xrn1	58	79.524	Ictalurus_punctatus
ENSPEMG00000020610	Xrn1	99	96.197	ENSSTOG00000013552	XRN1	99	95.346	Ictidomys_tridecemlineatus
ENSPEMG00000020610	Xrn1	97	94.703	ENSJJAG00000010863	Xrn1	100	94.703	Jaculus_jaculus
ENSPEMG00000020610	Xrn1	99	78.594	ENSKMAG00000021356	xrn1	94	76.371	Kryptolebias_marmoratus
ENSPEMG00000020610	Xrn1	99	77.266	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSPEMG00000020610	Xrn1	99	83.492	ENSLACG00000009020	XRN1	56	83.492	Latimeria_chalumnae
ENSPEMG00000020610	Xrn1	99	81.675	ENSLOCG00000007944	xrn1	57	81.675	Lepisosteus_oculatus
ENSPEMG00000020610	Xrn1	99	95.072	ENSLAFG00000015426	XRN1	92	95.072	Loxodonta_africana
ENSPEMG00000020610	Xrn1	99	96.197	ENSMFAG00000032599	XRN1	58	96.197	Macaca_fascicularis
ENSPEMG00000020610	Xrn1	99	96.038	ENSMMUG00000014038	XRN1	58	96.038	Macaca_mulatta
ENSPEMG00000020610	Xrn1	99	95.721	ENSMNEG00000034217	XRN1	58	95.721	Macaca_nemestrina
ENSPEMG00000020610	Xrn1	99	78.730	ENSMAMG00000013219	xrn1	94	77.113	Mastacembelus_armatus
ENSPEMG00000020610	Xrn1	99	77.179	ENSMZEG00005015099	xrn1	57	77.532	Maylandia_zebra
ENSPEMG00000020610	Xrn1	97	83.993	ENSMGAG00000006333	XRN1	56	83.993	Meleagris_gallopavo
ENSPEMG00000020610	Xrn1	99	95.404	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSPEMG00000020610	Xrn1	100	96.698	ENSMOCG00000008665	Xrn1	100	96.698	Microtus_ochrogaster
ENSPEMG00000020610	Xrn1	54	68.635	ENSMMOG00000020896	-	96	68.266	Mola_mola
ENSPEMG00000020610	Xrn1	99	88.694	ENSMODG00000021236	XRN1	57	88.694	Monodelphis_domestica
ENSPEMG00000020610	Xrn1	99	70.952	ENSMALG00000004098	xrn1	57	70.317	Monopterus_albus
ENSPEMG00000020610	Xrn1	99	97.205	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSPEMG00000020610	Xrn1	99	97.464	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSPEMG00000020610	Xrn1	99	97.147	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSPEMG00000020610	Xrn1	99	97.464	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSPEMG00000020610	Xrn1	99	95.721	ENSMPUG00000012040	XRN1	57	95.721	Mustela_putorius_furo
ENSPEMG00000020610	Xrn1	98	94.754	ENSMLUG00000016885	XRN1	55	94.754	Myotis_lucifugus
ENSPEMG00000020610	Xrn1	99	92.842	ENSNGAG00000023964	Xrn1	100	92.842	Nannospalax_galili
ENSPEMG00000020610	Xrn1	99	96.038	ENSNLEG00000004726	XRN1	58	96.038	Nomascus_leucogenys
ENSPEMG00000020610	Xrn1	99	78.254	ENSONIG00000016673	xrn1	64	78.481	Oreochromis_niloticus
ENSPEMG00000020610	Xrn1	85	87.298	ENSOANG00000006735	XRN1	53	87.298	Ornithorhynchus_anatinus
ENSPEMG00000020610	Xrn1	99	95.721	ENSOCUG00000001861	XRN1	56	95.721	Oryctolagus_cuniculus
ENSPEMG00000020610	Xrn1	99	79.180	ENSORLG00000013005	xrn1	58	78.831	Oryzias_latipes
ENSPEMG00000020610	Xrn1	99	79.365	ENSORLG00020005559	xrn1	59	78.989	Oryzias_latipes_hni
ENSPEMG00000020610	Xrn1	99	78.889	ENSORLG00015022523	xrn1	61	78.357	Oryzias_latipes_hsok
ENSPEMG00000020610	Xrn1	99	78.889	ENSOMEG00000015397	xrn1	62	77.848	Oryzias_melastigma
ENSPEMG00000020610	Xrn1	99	90.333	ENSOGAG00000000170	XRN1	58	90.333	Otolemur_garnettii
ENSPEMG00000020610	Xrn1	99	94.929	ENSOARG00000006343	XRN1	57	94.929	Ovis_aries
ENSPEMG00000020610	Xrn1	99	95.087	ENSPPAG00000010180	XRN1	58	95.087	Pan_paniscus
ENSPEMG00000020610	Xrn1	99	95.253	ENSPPRG00000007125	XRN1	57	95.253	Panthera_pardus
ENSPEMG00000020610	Xrn1	99	95.253	ENSPTIG00000021081	XRN1	57	95.253	Panthera_tigris_altaica
ENSPEMG00000020610	Xrn1	99	95.087	ENSPTRG00000015482	XRN1	58	95.087	Pan_troglodytes
ENSPEMG00000020610	Xrn1	99	96.038	ENSPANG00000010638	XRN1	58	96.038	Papio_anubis
ENSPEMG00000020610	Xrn1	99	87.163	ENSPSIG00000018050	XRN1	55	86.888	Pelodiscus_sinensis
ENSPEMG00000020610	Xrn1	99	74.277	ENSPMGG00000002648	xrn1	98	74.843	Periophthalmus_magnuspinnatus
ENSPEMG00000020610	Xrn1	92	56.604	ENSPMAG00000002975	xrn1	73	78.448	Petromyzon_marinus
ENSPEMG00000020610	Xrn1	99	88.712	ENSPCIG00000028735	XRN1	99	88.497	Phascolarctos_cinereus
ENSPEMG00000020610	Xrn1	99	77.795	ENSPFOG00000013932	xrn1	62	77.795	Poecilia_formosa
ENSPEMG00000020610	Xrn1	99	77.937	ENSPLAG00000021653	xrn1	62	78.254	Poecilia_latipinna
ENSPEMG00000020610	Xrn1	99	77.813	ENSPMEG00000003076	xrn1	61	77.567	Poecilia_mexicana
ENSPEMG00000020610	Xrn1	99	77.445	ENSPREG00000021147	xrn1	59	75.119	Poecilia_reticulata
ENSPEMG00000020610	Xrn1	99	95.721	ENSPPYG00000014172	XRN1	58	95.721	Pongo_abelii
ENSPEMG00000020610	Xrn1	92	94.322	ENSPCAG00000005638	XRN1	58	94.322	Procavia_capensis
ENSPEMG00000020610	Xrn1	100	95.253	ENSPCOG00000013089	XRN1	99	95.253	Propithecus_coquereli
ENSPEMG00000020610	Xrn1	99	92.771	ENSPVAG00000016265	XRN1	56	92.771	Pteropus_vampyrus
ENSPEMG00000020610	Xrn1	99	77.496	ENSPNYG00000010570	xrn1	58	77.848	Pundamilia_nyererei
ENSPEMG00000020610	Xrn1	99	76.619	ENSPNAG00000023531	xrn1	58	76.619	Pygocentrus_nattereri
ENSPEMG00000020610	Xrn1	99	96.989	ENSRNOG00000042951	Xrn1	57	96.989	Rattus_norvegicus
ENSPEMG00000020610	Xrn1	99	95.563	ENSRBIG00000041227	XRN1	58	95.563	Rhinopithecus_bieti
ENSPEMG00000020610	Xrn1	91	54.223	YGL173C	XRN1	57	54.223	Saccharomyces_cerevisiae
ENSPEMG00000020610	Xrn1	99	96.038	ENSSBOG00000029561	XRN1	58	96.038	Saimiri_boliviensis_boliviensis
ENSPEMG00000020610	Xrn1	96	88.449	ENSSHAG00000016207	XRN1	57	88.449	Sarcophilus_harrisii
ENSPEMG00000020610	Xrn1	99	78.378	ENSSFOG00015024211	xrn1	59	78.696	Scleropages_formosus
ENSPEMG00000020610	Xrn1	99	79.715	ENSSMAG00000016534	xrn1	61	79.715	Scophthalmus_maximus
ENSPEMG00000020610	Xrn1	99	79.206	ENSSDUG00000010306	xrn1	62	79.022	Seriola_dumerili
ENSPEMG00000020610	Xrn1	99	79.206	ENSSLDG00000021543	xrn1	61	79.022	Seriola_lalandi_dorsalis
ENSPEMG00000020610	Xrn1	89	91.722	ENSSARG00000007741	-	63	91.722	Sorex_araneus
ENSPEMG00000020610	Xrn1	50	76.673	ENSSPAG00000009856	-	96	77.079	Stegastes_partitus
ENSPEMG00000020610	Xrn1	99	87.758	ENSTGUG00000008498	XRN1	57	88.076	Taeniopygia_guttata
ENSPEMG00000020610	Xrn1	99	76.572	ENSTRUG00000004895	xrn1	96	75.316	Takifugu_rubripes
ENSPEMG00000020610	Xrn1	97	76.112	ENSTNIG00000017615	xrn1	58	74.127	Tetraodon_nigroviridis
ENSPEMG00000020610	Xrn1	99	86.124	ENSTBEG00000003256	XRN1	60	86.124	Tupaia_belangeri
ENSPEMG00000020610	Xrn1	99	92.771	ENSTTRG00000012914	XRN1	57	92.771	Tursiops_truncatus
ENSPEMG00000020610	Xrn1	99	94.012	ENSUAMG00000001608	XRN1	99	91.839	Ursus_americanus
ENSPEMG00000020610	Xrn1	99	95.721	ENSUMAG00000013625	XRN1	56	95.721	Ursus_maritimus
ENSPEMG00000020610	Xrn1	99	95.707	ENSVPAG00000004690	XRN1	57	95.404	Vicugna_pacos
ENSPEMG00000020610	Xrn1	99	95.721	ENSVVUG00000024461	XRN1	99	95.243	Vulpes_vulpes
ENSPEMG00000020610	Xrn1	99	82.306	ENSXETG00000000619	xrn1	99	88.802	Xenopus_tropicalis
ENSPEMG00000020610	Xrn1	99	77.107	ENSXCOG00000007917	xrn1	58	76.741	Xiphophorus_couchianus
ENSPEMG00000020610	Xrn1	99	76.471	ENSXMAG00000018320	xrn1	60	77.107	Xiphophorus_maculatus