EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPEMG00000020707 (Gene tree)
Gene ID: 102902886
Gene Symbol: Smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Peromyscus_maniculatus_bairdii
Status: putative
Strand: Plus strand
Length: 250778 bases
Position: chrKI615405.1:912639-1163416
Accession: 102902886
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPEMP00000023762	EST1	PF10374.9	8.5e-15	1	1
ENSPEMP00000023762	EST1_DNA_bind	PF10373.9	2.2e-61	1	1
ENSPEMP00000023763	EST1_DNA_bind	PF10373.9	7.7e-11	1	1
ENSPEMP00000023762	PIN_4	PF13638.6	5.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPEMT00000028136	-	6037	XM_006977374	ENSPEMP00000023762	1417 (aa)	XP_006977436	UPI00077DB645
ENSPEMT00000028137	-	702	-	ENSPEMP00000023763	234 (aa)	-	-

Gene Model

Click here to download ENSPEMG00000020707's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPEMG00000020707's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPEMG00000020707	Smg6	97	94.690	ENSG00000070366	SMG6	100	97.847	Homo_sapiens
ENSPEMG00000020707	Smg6	93	55.895	ENSAPOG00000019448	smg6	74	54.617	Acanthochromis_polyacanthus
ENSPEMG00000020707	Smg6	100	92.319	ENSAMEG00000007632	SMG6	100	92.319	Ailuropoda_melanoleuca
ENSPEMG00000020707	Smg6	93	55.459	ENSAOCG00000002630	smg6	74	54.937	Amphiprion_ocellaris
ENSPEMG00000020707	Smg6	93	55.895	ENSAPEG00000019101	smg6	74	55.016	Amphiprion_percula
ENSPEMG00000020707	Smg6	85	61.792	ENSATEG00000006483	smg6	73	54.714	Anabas_testudineus
ENSPEMG00000020707	Smg6	91	75.117	ENSACAG00000011783	SMG6	99	57.882	Anolis_carolinensis
ENSPEMG00000020707	Smg6	100	91.896	ENSANAG00000035760	SMG6	100	91.896	Aotus_nancymaae
ENSPEMG00000020707	Smg6	85	58.294	ENSACLG00000005288	smg6	80	55.043	Astatotilapia_calliptera
ENSPEMG00000020707	Smg6	86	60.577	ENSAMXG00000017326	smg6	99	50.487	Astyanax_mexicanus
ENSPEMG00000020707	Smg6	100	92.178	ENSBTAG00000000267	SMG6	100	92.178	Bos_taurus
ENSPEMG00000020707	Smg6	98	94.760	ENSCJAG00000001820	SMG6	100	91.966	Callithrix_jacchus
ENSPEMG00000020707	Smg6	100	91.966	ENSCAFG00000019260	SMG6	100	91.966	Canis_familiaris
ENSPEMG00000020707	Smg6	100	91.966	ENSCAFG00020009770	SMG6	100	91.966	Canis_lupus_dingo
ENSPEMG00000020707	Smg6	100	91.966	ENSCHIG00000021998	SMG6	100	91.966	Capra_hircus
ENSPEMG00000020707	Smg6	100	92.037	ENSTSYG00000003406	SMG6	100	97.847	Carlito_syrichta
ENSPEMG00000020707	Smg6	98	77.122	ENSCAPG00000016197	SMG6	99	83.372	Cavia_aperea
ENSPEMG00000020707	Smg6	96	95.982	ENSCPOG00000014878	SMG6	100	91.268	Cavia_porcellus
ENSPEMG00000020707	Smg6	100	91.896	ENSCCAG00000035801	SMG6	100	91.896	Cebus_capucinus
ENSPEMG00000020707	Smg6	100	92.178	ENSCATG00000031956	SMG6	100	92.178	Cercocebus_atys
ENSPEMG00000020707	Smg6	100	92.882	ENSCLAG00000006748	SMG6	100	92.882	Chinchilla_lanigera
ENSPEMG00000020707	Smg6	100	92.459	ENSCSAG00000013800	SMG6	100	92.459	Chlorocebus_sabaeus
ENSPEMG00000020707	Smg6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSPEMG00000020707	Smg6	98	80.786	ENSCPBG00000020369	SMG6	100	72.253	Chrysemys_picta_bellii
ENSPEMG00000020707	Smg6	69	35.260	ENSCING00000010099	-	99	35.305	Ciona_intestinalis
ENSPEMG00000020707	Smg6	97	93.805	ENSCANG00000031764	SMG6	100	97.065	Colobus_angolensis_palliatus
ENSPEMG00000020707	Smg6	55	96.154	ENSCGRG00001019595	Smg6	100	96.154	Cricetulus_griseus_chok1gshd
ENSPEMG00000020707	Smg6	98	90.188	ENSCGRG00000007782	Smg6	100	90.332	Cricetulus_griseus_crigri
ENSPEMG00000020707	Smg6	97	57.322	ENSCSEG00000012757	smg6	88	53.768	Cynoglossus_semilaevis
ENSPEMG00000020707	Smg6	92	56.579	ENSCVAG00000012789	smg6	74	53.810	Cyprinodon_variegatus
ENSPEMG00000020707	Smg6	100	50.472	ENSDARG00000100481	smg6	100	50.983	Danio_rerio
ENSPEMG00000020707	Smg6	97	95.133	ENSDNOG00000048283	SMG6	100	91.966	Dasypus_novemcinctus
ENSPEMG00000020707	Smg6	95	97.748	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSPEMG00000020707	Smg6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSPEMG00000020707	Smg6	83	52.764	ENSEBUG00000005059	smg6	73	48.555	Eptatretus_burgeri
ENSPEMG00000020707	Smg6	99	92.731	ENSEASG00005009318	SMG6	99	92.731	Equus_asinus_asinus
ENSPEMG00000020707	Smg6	99	92.731	ENSECAG00000006519	SMG6	99	92.731	Equus_caballus
ENSPEMG00000020707	Smg6	100	81.382	ENSEEUG00000003493	SMG6	100	81.382	Erinaceus_europaeus
ENSPEMG00000020707	Smg6	86	62.857	ENSELUG00000005934	smg6	67	56.358	Esox_lucius
ENSPEMG00000020707	Smg6	100	92.953	ENSFCAG00000028817	SMG6	100	92.953	Felis_catus
ENSPEMG00000020707	Smg6	98	79.913	ENSFALG00000006538	SMG6	100	71.775	Ficedula_albicollis
ENSPEMG00000020707	Smg6	98	95.652	ENSFDAG00000015106	SMG6	97	95.652	Fukomys_damarensis
ENSPEMG00000020707	Smg6	92	54.825	ENSFHEG00000013282	smg6	74	53.660	Fundulus_heteroclitus
ENSPEMG00000020707	Smg6	84	56.938	ENSGMOG00000019077	smg6	58	68.224	Gadus_morhua
ENSPEMG00000020707	Smg6	98	80.349	ENSGALG00000003108	SMG6	98	71.677	Gallus_gallus
ENSPEMG00000020707	Smg6	86	57.746	ENSGAFG00000000379	smg6	74	54.160	Gambusia_affinis
ENSPEMG00000020707	Smg6	100	53.441	ENSGACG00000020521	smg6	99	53.382	Gasterosteus_aculeatus
ENSPEMG00000020707	Smg6	98	80.349	ENSGAGG00000025617	SMG6	100	72.139	Gopherus_agassizii
ENSPEMG00000020707	Smg6	100	92.389	ENSGGOG00000017156	SMG6	100	92.389	Gorilla_gorilla
ENSPEMG00000020707	Smg6	85	58.294	ENSHBUG00000021311	smg6	74	55.408	Haplochromis_burtoni
ENSPEMG00000020707	Smg6	98	95.197	ENSHGLG00000012882	SMG6	100	91.626	Heterocephalus_glaber_female
ENSPEMG00000020707	Smg6	98	95.197	ENSHGLG00100017815	SMG6	100	91.696	Heterocephalus_glaber_male
ENSPEMG00000020707	Smg6	87	61.111	ENSHCOG00000008761	smg6	83	58.532	Hippocampus_comes
ENSPEMG00000020707	Smg6	91	60.829	ENSIPUG00000012493	smg6	75	55.280	Ictalurus_punctatus
ENSPEMG00000020707	Smg6	99	95.259	ENSSTOG00000028127	SMG6	100	93.798	Ictidomys_tridecemlineatus
ENSPEMG00000020707	Smg6	79	91.429	ENSJJAG00000015367	Smg6	95	89.419	Jaculus_jaculus
ENSPEMG00000020707	Smg6	100	54.472	ENSKMAG00000000279	smg6	75	54.503	Kryptolebias_marmoratus
ENSPEMG00000020707	Smg6	90	57.658	ENSLBEG00000002184	smg6	73	53.989	Labrus_bergylta
ENSPEMG00000020707	Smg6	55	56.543	ENSLACG00000000806	-	98	58.333	Latimeria_chalumnae
ENSPEMG00000020707	Smg6	96	79.464	ENSLACG00000003276	SMG6	100	79.785	Latimeria_chalumnae
ENSPEMG00000020707	Smg6	98	64.224	ENSLOCG00000006448	smg6	86	59.903	Lepisosteus_oculatus
ENSPEMG00000020707	Smg6	97	95.133	ENSLAFG00000001261	SMG6	100	91.402	Loxodonta_africana
ENSPEMG00000020707	Smg6	100	92.459	ENSMFAG00000003394	SMG6	100	92.459	Macaca_fascicularis
ENSPEMG00000020707	Smg6	100	92.389	ENSMMUG00000023161	SMG6	100	92.389	Macaca_mulatta
ENSPEMG00000020707	Smg6	97	93.805	ENSMNEG00000044592	SMG6	100	87.474	Macaca_nemestrina
ENSPEMG00000020707	Smg6	97	93.805	ENSMLEG00000029353	SMG6	100	97.180	Mandrillus_leucophaeus
ENSPEMG00000020707	Smg6	85	61.429	ENSMAMG00000020119	smg6	79	55.730	Mastacembelus_armatus
ENSPEMG00000020707	Smg6	85	58.294	ENSMZEG00005024736	smg6	74	55.224	Maylandia_zebra
ENSPEMG00000020707	Smg6	73	65.941	ENSMGAG00000005401	-	99	65.941	Meleagris_gallopavo
ENSPEMG00000020707	Smg6	53	90.244	ENSMGAG00000017200	-	100	85.286	Meleagris_gallopavo
ENSPEMG00000020707	Smg6	99	98.268	ENSMAUG00000017203	-	100	98.268	Mesocricetus_auratus
ENSPEMG00000020707	Smg6	100	94.080	ENSMICG00000012913	SMG6	100	94.080	Microcebus_murinus
ENSPEMG00000020707	Smg6	100	97.863	ENSMOCG00000019924	-	100	97.863	Microtus_ochrogaster
ENSPEMG00000020707	Smg6	100	47.509	ENSMMOG00000010883	smg6	77	56.406	Mola_mola
ENSPEMG00000020707	Smg6	82	45.641	ENSMODG00000024395	-	99	40.509	Monodelphis_domestica
ENSPEMG00000020707	Smg6	74	47.727	ENSMODG00000024410	-	99	41.292	Monodelphis_domestica
ENSPEMG00000020707	Smg6	98	91.703	ENSMODG00000010622	SMG6	100	86.357	Monodelphis_domestica
ENSPEMG00000020707	Smg6	74	48.295	ENSMODG00000024463	-	99	41.879	Monodelphis_domestica
ENSPEMG00000020707	Smg6	74	48.295	ENSMODG00000024460	-	99	41.683	Monodelphis_domestica
ENSPEMG00000020707	Smg6	85	59.716	ENSMALG00000001106	smg6	73	55.486	Monopterus_albus
ENSPEMG00000020707	Smg6	98	97.817	MGP_CAROLIEiJ_G0016729	Smg6	98	97.695	Mus_caroli
ENSPEMG00000020707	Smg6	98	98.253	ENSMUSG00000038290	Smg6	100	95.346	Mus_musculus
ENSPEMG00000020707	Smg6	98	98.690	MGP_PahariEiJ_G0017866	Smg6	98	97.118	Mus_pahari
ENSPEMG00000020707	Smg6	98	98.253	MGP_SPRETEiJ_G0017572	Smg6	100	95.487	Mus_spretus
ENSPEMG00000020707	Smg6	100	92.178	ENSMPUG00000013046	SMG6	100	92.178	Mustela_putorius_furo
ENSPEMG00000020707	Smg6	100	91.543	ENSMLUG00000005739	SMG6	100	91.543	Myotis_lucifugus
ENSPEMG00000020707	Smg6	100	94.937	ENSNGAG00000007287	Smg6	100	94.937	Nannospalax_galili
ENSPEMG00000020707	Smg6	89	57.014	ENSNBRG00000009511	smg6	80	54.595	Neolamprologus_brichardi
ENSPEMG00000020707	Smg6	97	94.248	ENSNLEG00000017171	SMG6	100	97.652	Nomascus_leucogenys
ENSPEMG00000020707	Smg6	98	90.830	ENSMEUG00000015804	SMG6	100	82.256	Notamacropus_eugenii
ENSPEMG00000020707	Smg6	73	90.000	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSPEMG00000020707	Smg6	97	94.273	ENSODEG00000008038	SMG6	100	85.714	Octodon_degus
ENSPEMG00000020707	Smg6	100	50.738	ENSONIG00000005594	smg6	100	51.535	Oreochromis_niloticus
ENSPEMG00000020707	Smg6	100	92.606	ENSOCUG00000013018	SMG6	100	92.817	Oryctolagus_cuniculus
ENSPEMG00000020707	Smg6	84	57.895	ENSORLG00000003317	smg6	78	52.954	Oryzias_latipes
ENSPEMG00000020707	Smg6	84	57.416	ENSORLG00020015343	smg6	78	52.624	Oryzias_latipes_hni
ENSPEMG00000020707	Smg6	84	57.895	ENSORLG00015020454	smg6	78	53.104	Oryzias_latipes_hsok
ENSPEMG00000020707	Smg6	84	58.373	ENSOMEG00000010838	smg6	79	51.955	Oryzias_melastigma
ENSPEMG00000020707	Smg6	100	93.169	ENSOGAG00000004483	SMG6	100	93.169	Otolemur_garnettii
ENSPEMG00000020707	Smg6	97	94.248	ENSOARG00000015076	SMG6	100	91.913	Ovis_aries
ENSPEMG00000020707	Smg6	100	92.459	ENSPPAG00000043296	SMG6	100	92.459	Pan_paniscus
ENSPEMG00000020707	Smg6	100	93.023	ENSPPRG00000014581	SMG6	100	93.023	Panthera_pardus
ENSPEMG00000020707	Smg6	97	94.690	ENSPTIG00000008925	SMG6	100	98.239	Panthera_tigris_altaica
ENSPEMG00000020707	Smg6	100	92.389	ENSPTRG00000008544	SMG6	100	97.847	Pan_troglodytes
ENSPEMG00000020707	Smg6	100	92.319	ENSPANG00000024588	SMG6	100	92.319	Papio_anubis
ENSPEMG00000020707	Smg6	98	77.293	ENSPSIG00000006660	SMG6	96	70.039	Pelodiscus_sinensis
ENSPEMG00000020707	Smg6	98	60.102	ENSPMGG00000000844	smg6	100	60.102	Periophthalmus_magnuspinnatus
ENSPEMG00000020707	Smg6	100	51.078	ENSPFOG00000012035	smg6	100	50.703	Poecilia_formosa
ENSPEMG00000020707	Smg6	84	58.654	ENSPLAG00000017660	smg6	74	54.041	Poecilia_latipinna
ENSPEMG00000020707	Smg6	84	59.615	ENSPMEG00000000258	smg6	74	54.358	Poecilia_mexicana
ENSPEMG00000020707	Smg6	91	57.333	ENSPREG00000010066	smg6	74	54.082	Poecilia_reticulata
ENSPEMG00000020707	Smg6	100	86.990	ENSPPYG00000007790	SMG6	100	86.990	Pongo_abelii
ENSPEMG00000020707	Smg6	100	87.385	ENSPCAG00000000552	SMG6	100	87.385	Procavia_capensis
ENSPEMG00000020707	Smg6	98	96.507	ENSPCOG00000020925	SMG6	100	93.798	Propithecus_coquereli
ENSPEMG00000020707	Smg6	97	93.363	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSPEMG00000020707	Smg6	89	57.014	ENSPNYG00000024151	smg6	79	57.178	Pundamilia_nyererei
ENSPEMG00000020707	Smg6	95	59.227	ENSPNAG00000015480	smg6	77	53.355	Pygocentrus_nattereri
ENSPEMG00000020707	Smg6	100	95.769	ENSRNOG00000003041	Smg6	100	95.769	Rattus_norvegicus
ENSPEMG00000020707	Smg6	100	92.319	ENSRBIG00000024746	SMG6	100	92.319	Rhinopithecus_bieti
ENSPEMG00000020707	Smg6	100	92.389	ENSRROG00000030423	SMG6	100	96.673	Rhinopithecus_roxellana
ENSPEMG00000020707	Smg6	100	91.966	ENSSBOG00000022518	SMG6	100	90.345	Saimiri_boliviensis_boliviensis
ENSPEMG00000020707	Smg6	89	42.254	ENSSHAG00000000380	-	99	39.328	Sarcophilus_harrisii
ENSPEMG00000020707	Smg6	98	89.956	ENSSHAG00000010045	SMG6	98	84.753	Sarcophilus_harrisii
ENSPEMG00000020707	Smg6	93	60.944	ENSSFOG00015005436	smg6	70	57.402	Scleropages_formosus
ENSPEMG00000020707	Smg6	89	57.658	ENSSMAG00000019777	smg6	73	54.419	Scophthalmus_maximus
ENSPEMG00000020707	Smg6	85	59.434	ENSSDUG00000016412	smg6	74	55.159	Seriola_dumerili
ENSPEMG00000020707	Smg6	85	59.434	ENSSLDG00000020747	smg6	77	54.224	Seriola_lalandi_dorsalis
ENSPEMG00000020707	Smg6	95	81.250	ENSSPUG00000007152	SMG6	99	69.520	Sphenodon_punctatus
ENSPEMG00000020707	Smg6	93	56.140	ENSSPAG00000015633	smg6	74	54.964	Stegastes_partitus
ENSPEMG00000020707	Smg6	100	91.825	ENSSSCG00000017826	SMG6	100	91.825	Sus_scrofa
ENSPEMG00000020707	Smg6	98	81.659	ENSTGUG00000005836	SMG6	100	71.539	Taeniopygia_guttata
ENSPEMG00000020707	Smg6	100	48.420	ENSTRUG00000000358	smg6	81	55.253	Takifugu_rubripes
ENSPEMG00000020707	Smg6	93	57.269	ENSTNIG00000016164	smg6	100	50.133	Tetraodon_nigroviridis
ENSPEMG00000020707	Smg6	98	97.794	ENSTBEG00000011424	SMG6	100	88.293	Tupaia_belangeri
ENSPEMG00000020707	Smg6	97	93.805	ENSTTRG00000001175	SMG6	91	91.818	Tursiops_truncatus
ENSPEMG00000020707	Smg6	100	92.475	ENSUAMG00000025152	SMG6	100	92.435	Ursus_americanus
ENSPEMG00000020707	Smg6	97	93.805	ENSUMAG00000009306	SMG6	100	92.708	Ursus_maritimus
ENSPEMG00000020707	Smg6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSPEMG00000020707	Smg6	100	91.755	ENSVVUG00000021727	SMG6	100	91.755	Vulpes_vulpes
ENSPEMG00000020707	Smg6	98	59.915	ENSXETG00000023799	SMG6	100	59.338	Xenopus_tropicalis
ENSPEMG00000020707	Smg6	91	58.447	ENSXCOG00000009867	smg6	74	54.988	Xiphophorus_couchianus
ENSPEMG00000020707	Smg6	91	56.444	ENSXMAG00000010321	smg6	74	54.317	Xiphophorus_maculatus