EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000000570 (Gene tree)
Gene ID: 103143825
Gene Symbol: lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 2632 bases
Position: chrKI519726.1:411207-413838
Accession: 103143825
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000000513	LSM	PF01423.22	1.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000000514	-	1107	XM_007560529	ENSPFOP00000000513	188 (aa)	XP_007560591	A0A087X410

Gene Model

Click here to download ENSPFOG00000000570's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000000570's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000000570	lsm4	52	32.673	ENSPFOG00000001621	si:ch73-14h10.2	100	32.673
ENSPFOG00000000570	lsm4	55	33.010	ENSPFOG00000019673	snrpd3l	93	33.077

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000000570	lsm4	63	81.513	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSPFOG00000000570	lsm4	76	88.079	ENSAPOG00000005643	lsm4	100	88.079	Acanthochromis_polyacanthus
ENSPFOG00000000570	lsm4	76	89.865	ENSAOCG00000006414	lsm4	100	89.865	Amphiprion_ocellaris
ENSPFOG00000000570	lsm4	76	89.262	ENSAPEG00000006238	lsm4	100	89.262	Amphiprion_percula
ENSPFOG00000000570	lsm4	76	88.158	ENSATEG00000016559	lsm4	100	88.158	Anabas_testudineus
ENSPFOG00000000570	lsm4	76	90.476	ENSACLG00000022738	lsm4	100	90.476	Astatotilapia_calliptera
ENSPFOG00000000570	lsm4	76	88.194	ENSAMXG00000016932	lsm4	100	90.278	Astyanax_mexicanus
ENSPFOG00000000570	lsm4	76	82.517	ENSCSEG00000016127	lsm4	100	93.007	Cynoglossus_semilaevis
ENSPFOG00000000570	lsm4	76	95.105	ENSCVAG00000010601	lsm4	100	95.105	Cyprinodon_variegatus
ENSPFOG00000000570	lsm4	68	94.531	ENSCVAG00000021828	lsm4	98	94.531	Cyprinodon_variegatus
ENSPFOG00000000570	lsm4	73	85.417	ENSDARG00000023852	lsm4	99	87.500	Danio_rerio
ENSPFOG00000000570	lsm4	53	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSPFOG00000000570	lsm4	66	93.600	ENSELUG00000012821	lsm4	95	93.600	Esox_lucius
ENSPFOG00000000570	lsm4	76	80.952	ENSGMOG00000007729	lsm4	99	82.432	Gadus_morhua
ENSPFOG00000000570	lsm4	100	94.681	ENSGAFG00000004903	lsm4	100	94.681	Gambusia_affinis
ENSPFOG00000000570	lsm4	76	83.333	ENSGACG00000008140	lsm4	100	87.333	Gasterosteus_aculeatus
ENSPFOG00000000570	lsm4	63	81.513	ENSGGOG00000012914	-	98	80.000	Gorilla_gorilla
ENSPFOG00000000570	lsm4	90	81.143	ENSHBUG00000008858	lsm4	96	81.143	Haplochromis_burtoni
ENSPFOG00000000570	lsm4	76	95.105	ENSHCOG00000008819	lsm4	100	95.105	Hippocampus_comes
ENSPFOG00000000570	lsm4	76	88.889	ENSIPUG00000005368	Lsm4	100	90.972	Ictalurus_punctatus
ENSPFOG00000000570	lsm4	76	93.056	ENSKMAG00000005073	lsm4	100	93.056	Kryptolebias_marmoratus
ENSPFOG00000000570	lsm4	76	89.262	ENSLBEG00000027930	lsm4	100	89.262	Labrus_bergylta
ENSPFOG00000000570	lsm4	54	97.030	ENSLOCG00000002025	lsm4	100	87.500	Lepisosteus_oculatus
ENSPFOG00000000570	lsm4	76	93.007	ENSMAMG00000006190	lsm4	100	93.007	Mastacembelus_armatus
ENSPFOG00000000570	lsm4	76	91.096	ENSMZEG00005016420	lsm4	100	91.096	Maylandia_zebra
ENSPFOG00000000570	lsm4	71	77.941	ENSMGAG00000004976	LSM4	96	83.088	Meleagris_gallopavo
ENSPFOG00000000570	lsm4	53	95.960	ENSMICG00000000222	LSM4	79	83.065	Microcebus_murinus
ENSPFOG00000000570	lsm4	76	91.608	ENSMALG00000018159	lsm4	100	91.608	Monopterus_albus
ENSPFOG00000000570	lsm4	55	95.146	ENSNBRG00000022150	lsm4	78	74.648	Neolamprologus_brichardi
ENSPFOG00000000570	lsm4	73	60.714	ENSODEG00000011712	-	98	51.799	Octodon_degus
ENSPFOG00000000570	lsm4	76	90.476	ENSONIG00000012724	lsm4	100	90.476	Oreochromis_niloticus
ENSPFOG00000000570	lsm4	76	93.750	ENSORLG00000008391	lsm4	100	93.750	Oryzias_latipes
ENSPFOG00000000570	lsm4	76	93.056	ENSORLG00020014829	lsm4	100	93.056	Oryzias_latipes_hni
ENSPFOG00000000570	lsm4	76	92.361	ENSORLG00015010205	lsm4	100	92.361	Oryzias_latipes_hsok
ENSPFOG00000000570	lsm4	76	94.444	ENSOMEG00000003606	lsm4	100	94.444	Oryzias_melastigma
ENSPFOG00000000570	lsm4	52	95.918	ENSOGAG00000027992	LSM4	75	82.927	Otolemur_garnettii
ENSPFOG00000000570	lsm4	63	81.513	ENSPPAG00000044045	-	98	80.000	Pan_paniscus
ENSPFOG00000000570	lsm4	76	88.194	ENSPKIG00000006154	lsm4	100	88.194	Paramormyrops_kingsleyae
ENSPFOG00000000570	lsm4	76	98.601	ENSPLAG00000016267	lsm4	100	98.601	Poecilia_latipinna
ENSPFOG00000000570	lsm4	76	100.000	ENSPMEG00000016378	lsm4	100	100.000	Poecilia_mexicana
ENSPFOG00000000570	lsm4	100	97.340	ENSPREG00000011290	lsm4	100	97.340	Poecilia_reticulata
ENSPFOG00000000570	lsm4	53	95.960	ENSPCOG00000019837	LSM4	79	83.065	Propithecus_coquereli
ENSPFOG00000000570	lsm4	76	91.096	ENSPNYG00000016794	lsm4	100	91.096	Pundamilia_nyererei
ENSPFOG00000000570	lsm4	72	90.441	ENSPNAG00000016598	lsm4	100	90.441	Pygocentrus_nattereri
ENSPFOG00000000570	lsm4	76	89.583	ENSSFOG00015021067	lsm4	100	89.583	Scleropages_formosus
ENSPFOG00000000570	lsm4	76	76.000	ENSSMAG00000021020	lsm4	100	88.667	Scophthalmus_maximus
ENSPFOG00000000570	lsm4	76	80.240	ENSSDUG00000009588	lsm4	100	80.240	Seriola_dumerili
ENSPFOG00000000570	lsm4	76	79.762	ENSSLDG00000006827	lsm4	100	79.762	Seriola_lalandi_dorsalis
ENSPFOG00000000570	lsm4	76	88.079	ENSSPAG00000011615	lsm4	100	88.079	Stegastes_partitus
ENSPFOG00000000570	lsm4	76	92.308	ENSTRUG00000021737	lsm4	100	92.308	Takifugu_rubripes
ENSPFOG00000000570	lsm4	76	88.889	ENSTNIG00000010191	lsm4	100	90.972	Tetraodon_nigroviridis
ENSPFOG00000000570	lsm4	52	96.939	ENSXETG00000024933	lsm4	99	86.331	Xenopus_tropicalis
ENSPFOG00000000570	lsm4	100	94.681	ENSXMAG00000026672	lsm4	100	94.681	Xiphophorus_maculatus