EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000002643 (Gene tree)
Gene ID: 103148591
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 10410 bases
Position: chrKI519818.1:920410-930819
Accession: 103148591
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000023690	RRM_1	PF00076.22	4e-13	1	1
ENSPFOP00000002560	RRM_1	PF00076.22	4.2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000002564	-	1833	-	ENSPFOP00000002560	320 (aa)	XP_007567491	A0A087X9V7
ENSPFOT00000029881	-	1297	-	ENSPFOP00000023690	318 (aa)	-	A0A096LWZ9

Gene Model

Click here to download ENSPFOG00000002643's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000002643's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000002643	-	85	48.822	ENSPFOG00000006120	-	85	50.193
ENSPFOG00000002643	-	87	75.618	ENSPFOG00000001583	-	95	70.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000002643	-	66	57.277	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSPFOG00000002643	-	80	85.214	ENSAPOG00000006963	hnrnpc	95	72.638	Acanthochromis_polyacanthus
ENSPFOG00000002643	-	81	80.228	ENSACIG00000000270	-	98	72.168	Amphilophus_citrinellus
ENSPFOG00000002643	-	97	88.141	ENSACIG00000016568	-	99	87.662	Amphilophus_citrinellus
ENSPFOG00000002643	-	80	85.603	ENSAOCG00000003896	-	95	72.964	Amphiprion_ocellaris
ENSPFOG00000002643	-	100	87.578	ENSAOCG00000021616	-	100	88.199	Amphiprion_ocellaris
ENSPFOG00000002643	-	80	85.603	ENSAPEG00000001489	-	95	72.964	Amphiprion_percula
ENSPFOG00000002643	-	84	90.335	ENSAPEG00000019962	-	100	77.389	Amphiprion_percula
ENSPFOG00000002643	-	84	90.000	ENSATEG00000018006	-	100	86.239	Anabas_testudineus
ENSPFOG00000002643	-	81	81.609	ENSATEG00000011734	-	98	72.638	Anabas_testudineus
ENSPFOG00000002643	-	85	46.735	ENSAPLG00000015574	RALYL	75	55.204	Anas_platyrhynchos
ENSPFOG00000002643	-	66	55.111	ENSACAG00000028464	RALYL	74	55.656	Anolis_carolinensis
ENSPFOG00000002643	-	66	57.277	ENSANAG00000023383	RALYL	73	57.895	Aotus_nancymaae
ENSPFOG00000002643	-	80	79.377	ENSACLG00000000995	-	81	83.562	Astatotilapia_calliptera
ENSPFOG00000002643	-	80	79.151	ENSACLG00000013636	-	84	79.447	Astatotilapia_calliptera
ENSPFOG00000002643	-	84	87.823	ENSACLG00000005707	-	90	89.888	Astatotilapia_calliptera
ENSPFOG00000002643	-	84	77.239	ENSAMXG00000034915	zgc:55733	86	75.600	Astyanax_mexicanus
ENSPFOG00000002643	-	88	63.251	ENSAMXG00000042946	hnrnpc	99	73.196	Astyanax_mexicanus
ENSPFOG00000002643	-	66	57.277	ENSCJAG00000000402	RALYL	73	57.895	Callithrix_jacchus
ENSPFOG00000002643	-	65	55.405	ENSCPOG00000012314	RALYL	74	55.455	Cavia_porcellus
ENSPFOG00000002643	-	66	57.277	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSPFOG00000002643	-	66	57.277	ENSCATG00000042145	RALYL	73	57.895	Cercocebus_atys
ENSPFOG00000002643	-	65	55.405	ENSCLAG00000005228	RALYL	74	55.455	Chinchilla_lanigera
ENSPFOG00000002643	-	67	53.778	ENSCHOG00000013228	RALYL	74	52.489	Choloepus_hoffmanni
ENSPFOG00000002643	-	66	57.277	ENSCANG00000039144	RALYL	73	57.895	Colobus_angolensis_palliatus
ENSPFOG00000002643	-	66	54.667	ENSCGRG00001009241	Ralyl	74	54.751	Cricetulus_griseus_chok1gshd
ENSPFOG00000002643	-	69	76.786	ENSCSEG00000019769	-	74	74.545	Cynoglossus_semilaevis
ENSPFOG00000002643	-	80	87.008	ENSCSEG00000021349	-	96	75.490	Cynoglossus_semilaevis
ENSPFOG00000002643	-	100	96.605	ENSCVAG00000016981	-	100	96.605	Cyprinodon_variegatus
ENSPFOG00000002643	-	86	65.480	ENSCVAG00000002797	-	98	58.576	Cyprinodon_variegatus
ENSPFOG00000002643	-	84	77.903	ENSDARG00000103845	zgc:55733	90	75.100	Danio_rerio
ENSPFOG00000002643	-	78	80.000	ENSDARG00000053810	hnrnpc	96	72.816	Danio_rerio
ENSPFOG00000002643	-	66	55.556	ENSDORG00000003721	Ralyl	74	55.656	Dipodomys_ordii
ENSPFOG00000002643	-	51	56.647	ENSETEG00000014028	RALYL	81	60.377	Echinops_telfairi
ENSPFOG00000002643	-	67	47.982	ENSEBUG00000006049	RALYL	73	48.571	Eptatretus_burgeri
ENSPFOG00000002643	-	93	39.617	ENSEBUG00000012363	hnrnpc	69	44.130	Eptatretus_burgeri
ENSPFOG00000002643	-	66	55.111	ENSEEUG00000007202	RALYL	76	55.455	Erinaceus_europaeus
ENSPFOG00000002643	-	79	77.985	ENSELUG00000007714	-	88	75.862	Esox_lucius
ENSPFOG00000002643	-	84	77.174	ENSELUG00000004132	-	99	74.038	Esox_lucius
ENSPFOG00000002643	-	67	57.991	ENSFALG00000008647	RALYL	96	58.294	Ficedula_albicollis
ENSPFOG00000002643	-	88	75.087	ENSFHEG00000003605	-	95	67.208	Fundulus_heteroclitus
ENSPFOG00000002643	-	97	86.769	ENSFHEG00000007278	-	99	86.604	Fundulus_heteroclitus
ENSPFOG00000002643	-	67	57.143	ENSGALG00000036938	RALYL	74	55.204	Gallus_gallus
ENSPFOG00000002643	-	87	74.648	ENSGAFG00000020486	-	95	68.506	Gambusia_affinis
ENSPFOG00000002643	-	97	99.032	ENSGAFG00000020992	-	100	99.032	Gambusia_affinis
ENSPFOG00000002643	-	69	74.208	ENSGACG00000018932	-	85	68.203	Gasterosteus_aculeatus
ENSPFOG00000002643	-	100	78.313	ENSGACG00000017772	-	96	89.558	Gasterosteus_aculeatus
ENSPFOG00000002643	-	66	57.277	ENSGGOG00000000841	RALYL	73	57.895	Gorilla_gorilla
ENSPFOG00000002643	-	80	79.767	ENSHBUG00000018342	-	95	68.285	Haplochromis_burtoni
ENSPFOG00000002643	-	100	86.111	ENSHBUG00000010527	-	100	84.877	Haplochromis_burtoni
ENSPFOG00000002643	-	65	54.955	ENSHGLG00000004866	RALYL	74	55.000	Heterocephalus_glaber_female
ENSPFOG00000002643	-	65	54.955	ENSHGLG00100017480	RALYL	74	55.000	Heterocephalus_glaber_male
ENSPFOG00000002643	-	81	83.456	ENSHCOG00000012333	hnrnpc	91	83.394	Hippocampus_comes
ENSPFOG00000002643	-	82	78.244	ENSIPUG00000011271	hnrnpc	99	77.632	Ictalurus_punctatus
ENSPFOG00000002643	-	91	73.630	ENSIPUG00000008666	zgc:55733	99	74.783	Ictalurus_punctatus
ENSPFOG00000002643	-	65	55.605	ENSSTOG00000012583	RALYL	76	55.204	Ictidomys_tridecemlineatus
ENSPFOG00000002643	-	86	75.986	ENSKMAG00000011170	-	96	70.550	Kryptolebias_marmoratus
ENSPFOG00000002643	-	100	88.854	ENSKMAG00000018265	-	100	91.331	Kryptolebias_marmoratus
ENSPFOG00000002643	-	100	81.931	ENSLBEG00000006193	-	100	84.735	Labrus_bergylta
ENSPFOG00000002643	-	95	72.990	ENSLBEG00000006979	-	99	67.752	Labrus_bergylta
ENSPFOG00000002643	-	96	70.679	ENSLBEG00000024418	-	98	66.026	Labrus_bergylta
ENSPFOG00000002643	-	83	69.118	ENSLOCG00000002560	hnrnpc	88	69.380	Lepisosteus_oculatus
ENSPFOG00000002643	-	66	57.277	ENSMNEG00000033288	RALYL	73	57.895	Macaca_nemestrina
ENSPFOG00000002643	-	66	57.277	ENSMLEG00000038284	RALYL	73	57.895	Mandrillus_leucophaeus
ENSPFOG00000002643	-	81	81.538	ENSMAMG00000012236	-	98	70.588	Mastacembelus_armatus
ENSPFOG00000002643	-	100	83.901	ENSMAMG00000008033	-	100	85.449	Mastacembelus_armatus
ENSPFOG00000002643	-	100	86.111	ENSMZEG00005024249	-	100	84.877	Maylandia_zebra
ENSPFOG00000002643	-	80	79.377	ENSMZEG00005020460	-	87	78.125	Maylandia_zebra
ENSPFOG00000002643	-	66	54.667	ENSMAUG00000015149	Ralyl	74	54.751	Mesocricetus_auratus
ENSPFOG00000002643	-	67	56.019	ENSMICG00000005558	RALYL	78	77.922	Microcebus_murinus
ENSPFOG00000002643	-	65	55.157	ENSMOCG00000017371	Ralyl	74	54.751	Microtus_ochrogaster
ENSPFOG00000002643	-	90	88.396	ENSMMOG00000019520	-	100	85.959	Mola_mola
ENSPFOG00000002643	-	86	78.777	ENSMMOG00000021465	-	88	80.952	Mola_mola
ENSPFOG00000002643	-	84	85.130	ENSMALG00000014623	-	84	87.547	Monopterus_albus
ENSPFOG00000002643	-	81	72.973	ENSMALG00000007520	-	98	62.215	Monopterus_albus
ENSPFOG00000002643	-	66	54.667	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSPFOG00000002643	-	67	55.947	ENSMPUG00000010724	RALYL	74	54.751	Mustela_putorius_furo
ENSPFOG00000002643	-	66	54.667	ENSNGAG00000013375	Ralyl	74	54.751	Nannospalax_galili
ENSPFOG00000002643	-	100	84.877	ENSNBRG00000015676	-	100	85.802	Neolamprologus_brichardi
ENSPFOG00000002643	-	81	80.153	ENSNBRG00000004912	-	92	79.018	Neolamprologus_brichardi
ENSPFOG00000002643	-	66	57.277	ENSNLEG00000002702	RALYL	70	57.895	Nomascus_leucogenys
ENSPFOG00000002643	-	57	50.000	ENSOPRG00000013650	-	98	48.421	Ochotona_princeps
ENSPFOG00000002643	-	66	54.464	ENSODEG00000001012	RALYL	74	55.000	Octodon_degus
ENSPFOG00000002643	-	100	86.420	ENSONIG00000018350	-	100	84.568	Oreochromis_niloticus
ENSPFOG00000002643	-	80	80.989	ENSONIG00000007859	-	90	81.226	Oreochromis_niloticus
ENSPFOG00000002643	-	80	71.815	ENSORLG00000009999	-	95	62.136	Oryzias_latipes
ENSPFOG00000002643	-	100	86.866	ENSORLG00000003144	-	100	86.567	Oryzias_latipes
ENSPFOG00000002643	-	80	71.429	ENSORLG00020018228	hnrnpc	95	61.812	Oryzias_latipes_hni
ENSPFOG00000002643	-	100	86.053	ENSORLG00015009460	-	100	86.350	Oryzias_latipes_hsok
ENSPFOG00000002643	-	80	71.815	ENSORLG00015019755	-	95	62.136	Oryzias_latipes_hsok
ENSPFOG00000002643	-	100	89.815	ENSOMEG00000022665	-	100	89.198	Oryzias_melastigma
ENSPFOG00000002643	-	80	73.359	ENSOMEG00000020488	-	94	63.754	Oryzias_melastigma
ENSPFOG00000002643	-	66	57.277	ENSPPAG00000038705	RALYL	73	57.895	Pan_paniscus
ENSPFOG00000002643	-	67	58.986	ENSPPRG00000018612	RALYL	73	57.820	Panthera_pardus
ENSPFOG00000002643	-	67	58.986	ENSPTIG00000020331	RALYL	73	57.820	Panthera_tigris_altaica
ENSPFOG00000002643	-	66	57.277	ENSPTRG00000020381	RALYL	73	57.895	Pan_troglodytes
ENSPFOG00000002643	-	66	57.277	ENSPANG00000029305	RALYL	73	57.895	Papio_anubis
ENSPFOG00000002643	-	100	70.948	ENSPKIG00000008592	-	96	74.051	Paramormyrops_kingsleyae
ENSPFOG00000002643	-	99	72.308	ENSPKIG00000022837	-	96	77.460	Paramormyrops_kingsleyae
ENSPFOG00000002643	-	65	55.605	ENSPSIG00000011135	RALYL	74	55.204	Pelodiscus_sinensis
ENSPFOG00000002643	-	95	62.171	ENSPMGG00000017774	-	92	65.022	Periophthalmus_magnuspinnatus
ENSPFOG00000002643	-	69	89.140	ENSPMGG00000013144	-	82	84.163	Periophthalmus_magnuspinnatus
ENSPFOG00000002643	-	66	54.667	ENSPEMG00000016447	Ralyl	74	54.751	Peromyscus_maniculatus_bairdii
ENSPFOG00000002643	-	67	54.626	ENSPMAG00000002407	RALYL	96	54.054	Petromyzon_marinus
ENSPFOG00000002643	-	100	99.688	ENSPLAG00000000061	-	100	99.688	Poecilia_latipinna
ENSPFOG00000002643	-	87	74.113	ENSPLAG00000015305	-	95	69.055	Poecilia_latipinna
ENSPFOG00000002643	-	100	99.375	ENSPMEG00000016524	-	100	99.375	Poecilia_mexicana
ENSPFOG00000002643	-	87	77.113	ENSPMEG00000004802	-	95	70.455	Poecilia_mexicana
ENSPFOG00000002643	-	90	98.270	ENSPREG00000001852	-	97	98.270	Poecilia_reticulata
ENSPFOG00000002643	-	80	76.357	ENSPREG00000007928	-	95	68.831	Poecilia_reticulata
ENSPFOG00000002643	-	71	52.542	ENSPVAG00000010821	RALYL	78	53.017	Pteropus_vampyrus
ENSPFOG00000002643	-	81	80.534	ENSPNYG00000020293	-	86	79.842	Pundamilia_nyererei
ENSPFOG00000002643	-	98	76.115	ENSPNYG00000003747	-	90	89.888	Pundamilia_nyererei
ENSPFOG00000002643	-	84	72.527	ENSPNAG00000019200	zgc:55733	95	66.343	Pygocentrus_nattereri
ENSPFOG00000002643	-	77	78.947	ENSPNAG00000015686	hnrnpc	89	77.736	Pygocentrus_nattereri
ENSPFOG00000002643	-	66	57.277	ENSRROG00000023925	RALYL	78	77.922	Rhinopithecus_roxellana
ENSPFOG00000002643	-	87	75.862	ENSSFOG00015012924	-	82	96.296	Scleropages_formosus
ENSPFOG00000002643	-	100	67.178	ENSSFOG00015012015	-	81	84.507	Scleropages_formosus
ENSPFOG00000002643	-	100	79.938	ENSSMAG00000011147	-	96	83.548	Scophthalmus_maximus
ENSPFOG00000002643	-	77	81.124	ENSSMAG00000013592	-	95	73.377	Scophthalmus_maximus
ENSPFOG00000002643	-	87	79.152	ENSSDUG00000001723	-	95	73.290	Seriola_dumerili
ENSPFOG00000002643	-	100	85.093	ENSSDUG00000006730	-	100	81.988	Seriola_dumerili
ENSPFOG00000002643	-	84	85.874	ENSSLDG00000007474	-	92	87.170	Seriola_lalandi_dorsalis
ENSPFOG00000002643	-	84	80.657	ENSSLDG00000007454	-	82	82.213	Seriola_lalandi_dorsalis
ENSPFOG00000002643	-	86	80.645	ENSSPAG00000023204	-	95	73.290	Stegastes_partitus
ENSPFOG00000002643	-	100	87.850	ENSSPAG00000013996	-	100	88.785	Stegastes_partitus
ENSPFOG00000002643	-	85	46.735	ENSTGUG00000011689	RALYL	79	53.913	Taeniopygia_guttata
ENSPFOG00000002643	-	84	77.985	ENSTRUG00000020158	-	97	69.180	Takifugu_rubripes
ENSPFOG00000002643	-	81	77.567	ENSTNIG00000007427	-	83	78.824	Tetraodon_nigroviridis
ENSPFOG00000002643	-	80	78.210	ENSTNIG00000000334	-	93	77.734	Tetraodon_nigroviridis
ENSPFOG00000002643	-	67	48.430	ENSTBEG00000005551	RALYL	86	50.228	Tupaia_belangeri
ENSPFOG00000002643	-	65	54.128	ENSTTRG00000015762	RALYL	74	53.953	Tursiops_truncatus
ENSPFOG00000002643	-	67	53.241	ENSVPAG00000008501	RALYL	74	53.081	Vicugna_pacos
ENSPFOG00000002643	-	85	70.144	ENSXCOG00000006552	-	81	71.260	Xiphophorus_couchianus
ENSPFOG00000002643	-	50	91.566	ENSXCOG00000019434	-	68	93.671	Xiphophorus_couchianus
ENSPFOG00000002643	-	90	97.924	ENSXMAG00000022849	-	95	97.924	Xiphophorus_maculatus
ENSPFOG00000002643	-	87	76.408	ENSXMAG00000009333	-	95	68.831	Xiphophorus_maculatus