EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000003103 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 8826 bases
Position: chrKI520018.1:379603-388428
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000003054	zf-C2H2	PF00096.26	9.4e-19	1	3
ENSPFOP00000003054	zf-C2H2	PF00096.26	9.4e-19	2	3
ENSPFOP00000003054	zf-C2H2	PF00096.26	9.4e-19	3	3
ENSPFOP00000003054	zf-met	PF12874.7	5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000003058	-	3651	-	ENSPFOP00000003054	647 (aa)	-	A0A087XBA1

Gene Model

Click here to download ENSPFOG00000003103's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000003103's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000003103	prdm1b	53	76.301	ENSAPOG00000022084	prdm1b	75	76.638	Acanthochromis_polyacanthus
ENSPFOG00000003103	prdm1b	98	41.245	ENSAPOG00000014135	-	85	41.245	Acanthochromis_polyacanthus
ENSPFOG00000003103	prdm1b	84	69.414	ENSACIG00000014426	prdm1b	87	69.414	Amphilophus_citrinellus
ENSPFOG00000003103	prdm1b	67	84.722	ENSAOCG00000002230	prdm1b	90	66.304	Amphiprion_ocellaris
ENSPFOG00000003103	prdm1b	82	85.294	ENSAPEG00000019826	prdm1b	90	69.077	Amphiprion_percula
ENSPFOG00000003103	prdm1b	99	42.213	ENSATEG00000021017	prdm1a	89	43.937	Anabas_testudineus
ENSPFOG00000003103	prdm1b	55	86.798	ENSATEG00000006924	prdm1b	87	71.248	Anabas_testudineus
ENSPFOG00000003103	prdm1b	85	71.301	ENSACLG00000005487	prdm1b	84	71.301	Astatotilapia_calliptera
ENSPFOG00000003103	prdm1b	100	42.837	ENSCSEG00000009707	prdm1a	90	42.857	Cynoglossus_semilaevis
ENSPFOG00000003103	prdm1b	72	57.778	ENSCVAG00000019081	prdm1a	84	42.466	Cyprinodon_variegatus
ENSPFOG00000003103	prdm1b	54	87.608	ENSCVAG00000016746	prdm1b	89	75.193	Cyprinodon_variegatus
ENSPFOG00000003103	prdm1b	85	75.228	ENSFHEG00000019848	prdm1b	86	75.228	Fundulus_heteroclitus
ENSPFOG00000003103	prdm1b	99	86.191	ENSGAFG00000016191	prdm1b	87	86.191	Gambusia_affinis
ENSPFOG00000003103	prdm1b	98	40.625	ENSGAFG00000013012	-	87	40.625	Gambusia_affinis
ENSPFOG00000003103	prdm1b	100	65.167	ENSGACG00000002716	prdm1b	95	66.183	Gasterosteus_aculeatus
ENSPFOG00000003103	prdm1b	85	71.634	ENSHBUG00000001475	prdm1b	89	71.634	Haplochromis_burtoni
ENSPFOG00000003103	prdm1b	85	65.295	ENSHCOG00000003617	prdm1b	86	65.295	Hippocampus_comes
ENSPFOG00000003103	prdm1b	83	73.810	ENSIPUG00000013740	prdm1b	74	73.810	Ictalurus_punctatus
ENSPFOG00000003103	prdm1b	85	68.043	ENSKMAG00000011218	prdm1b	85	68.043	Kryptolebias_marmoratus
ENSPFOG00000003103	prdm1b	98	41.643	ENSKMAG00000016247	-	85	41.643	Kryptolebias_marmoratus
ENSPFOG00000003103	prdm1b	100	72.504	ENSLBEG00000020955	prdm1b	88	72.504	Labrus_bergylta
ENSPFOG00000003103	prdm1b	100	54.559	ENSLOCG00000004978	prdm1b	87	54.376	Lepisosteus_oculatus
ENSPFOG00000003103	prdm1b	85	71.301	ENSMZEG00005026361	prdm1b	84	71.301	Maylandia_zebra
ENSPFOG00000003103	prdm1b	85	70.054	ENSMMOG00000013458	prdm1b	88	70.054	Mola_mola
ENSPFOG00000003103	prdm1b	85	65.724	ENSMALG00000011410	prdm1b	88	67.748	Monopterus_albus
ENSPFOG00000003103	prdm1b	67	55.159	ENSMALG00000000462	-	57	55.159	Monopterus_albus
ENSPFOG00000003103	prdm1b	100	66.667	ENSONIG00000013583	prdm1b	96	66.810	Oreochromis_niloticus
ENSPFOG00000003103	prdm1b	61	61.650	ENSONIG00000014709	-	56	60.849	Oreochromis_niloticus
ENSPFOG00000003103	prdm1b	84	63.102	ENSORLG00000010025	prdm1b	88	63.993	Oryzias_latipes
ENSPFOG00000003103	prdm1b	84	63.556	ENSORLG00015009022	prdm1b	87	63.781	Oryzias_latipes_hsok
ENSPFOG00000003103	prdm1b	81	69.318	ENSPKIG00000022335	prdm1b	76	70.060	Paramormyrops_kingsleyae
ENSPFOG00000003103	prdm1b	85	80.036	ENSPLAG00000018491	prdm1b	86	80.036	Poecilia_latipinna
ENSPFOG00000003103	prdm1b	85	80.978	ENSPMEG00000007869	prdm1b	86	80.978	Poecilia_mexicana
ENSPFOG00000003103	prdm1b	100	87.275	ENSPREG00000011327	prdm1b	86	87.275	Poecilia_reticulata
ENSPFOG00000003103	prdm1b	100	42.954	ENSPVAG00000011732	PRDM1	90	42.954	Pteropus_vampyrus
ENSPFOG00000003103	prdm1b	99	44.509	ENSPNAG00000028442	prdm1a	86	44.509	Pygocentrus_nattereri
ENSPFOG00000003103	prdm1b	82	72.067	ENSSFOG00015021896	prdm1b	88	54.186	Scleropages_formosus
ENSPFOG00000003103	prdm1b	69	52.083	ENSSMAG00000017518	-	56	52.083	Scophthalmus_maximus
ENSPFOG00000003103	prdm1b	81	84.314	ENSSMAG00000020467	prdm1b	88	71.101	Scophthalmus_maximus
ENSPFOG00000003103	prdm1b	85	70.450	ENSSDUG00000020610	prdm1b	86	70.450	Seriola_dumerili
ENSPFOG00000003103	prdm1b	98	38.710	ENSSDUG00000000524	-	85	38.710	Seriola_dumerili
ENSPFOG00000003103	prdm1b	67	54.902	ENSSLDG00000001957	-	55	54.902	Seriola_lalandi_dorsalis
ENSPFOG00000003103	prdm1b	100	73.547	ENSSLDG00000021973	prdm1b	88	73.547	Seriola_lalandi_dorsalis
ENSPFOG00000003103	prdm1b	84	69.982	ENSSPAG00000000803	prdm1b	93	69.052	Stegastes_partitus
ENSPFOG00000003103	prdm1b	68	55.777	ENSSPAG00000009830	-	57	55.777	Stegastes_partitus
ENSPFOG00000003103	prdm1b	100	85.628	ENSXCOG00000018920	prdm1b	90	82.226	Xiphophorus_couchianus
ENSPFOG00000003103	prdm1b	100	85.930	ENSXMAG00000016765	prdm1b	85	85.930	Xiphophorus_maculatus