EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000003362 (Gene tree)
Gene ID: 103155850
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 12280 bases
Position: chrKI520061.1:344151-356430
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000003336	RRM_1	PF00076.22	5.3e-32	1	2
ENSPFOP00000003336	RRM_1	PF00076.22	5.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000003342	-	3382	-	ENSPFOP00000003336	512 (aa)	-	A0A087XC33

Gene Model

Click here to download ENSPFOG00000003362's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000003362's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000003362	pspc1	66	62.500	ENSPFOG00000016436	nono	83	56.489
ENSPFOG00000003362	pspc1	66	57.771	ENSPFOG00000003127	sfpq	57	57.941

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000003362	pspc1	88	68.076	ENSG00000121390	PSPC1	92	71.925	Homo_sapiens
ENSPFOG00000003362	pspc1	100	80.497	ENSAPOG00000015946	pspc1	99	79.541	Acanthochromis_polyacanthus
ENSPFOG00000003362	pspc1	94	65.936	ENSAMEG00000017420	PSPC1	93	66.998	Ailuropoda_melanoleuca
ENSPFOG00000003362	pspc1	100	73.077	ENSACIG00000018695	pspc1	99	72.115	Amphilophus_citrinellus
ENSPFOG00000003362	pspc1	100	80.762	ENSAOCG00000005279	pspc1	99	80.190	Amphiprion_ocellaris
ENSPFOG00000003362	pspc1	100	81.226	ENSAPEG00000015927	pspc1	99	80.651	Amphiprion_percula
ENSPFOG00000003362	pspc1	100	68.321	ENSATEG00000004878	pspc1	99	65.840	Anabas_testudineus
ENSPFOG00000003362	pspc1	75	62.183	ENSAPLG00000003643	SFPQ	77	58.111	Anas_platyrhynchos
ENSPFOG00000003362	pspc1	76	66.912	ENSAPLG00000006246	PSPC1	99	67.726	Anas_platyrhynchos
ENSPFOG00000003362	pspc1	91	65.121	ENSACAG00000002093	PSPC1	92	65.868	Anolis_carolinensis
ENSPFOG00000003362	pspc1	69	58.402	ENSACAG00000013307	-	65	53.811	Anolis_carolinensis
ENSPFOG00000003362	pspc1	88	68.076	ENSANAG00000000059	PSPC1	94	68.700	Aotus_nancymaae
ENSPFOG00000003362	pspc1	100	72.727	ENSACLG00000027220	pspc1	99	71.346	Astatotilapia_calliptera
ENSPFOG00000003362	pspc1	98	65.392	ENSAMXG00000036881	pspc1	97	65.966	Astyanax_mexicanus
ENSPFOG00000003362	pspc1	97	65.192	ENSBTAG00000003934	PSPC1	92	66.935	Bos_taurus
ENSPFOG00000003362	pspc1	88	67.653	ENSCJAG00000004554	PSPC1	95	66.008	Callithrix_jacchus
ENSPFOG00000003362	pspc1	88	68.076	ENSCAFG00020002009	PSPC1	94	71.540	Canis_lupus_dingo
ENSPFOG00000003362	pspc1	97	65.192	ENSCHIG00000016708	PSPC1	92	66.935	Capra_hircus
ENSPFOG00000003362	pspc1	77	61.045	ENSTSYG00000032882	PSPC1	90	60.238	Carlito_syrichta
ENSPFOG00000003362	pspc1	88	67.865	ENSCPOG00000000395	PSPC1	89	73.961	Cavia_porcellus
ENSPFOG00000003362	pspc1	88	68.076	ENSCCAG00000033498	PSPC1	95	66.206	Cebus_capucinus
ENSPFOG00000003362	pspc1	88	67.865	ENSCATG00000036434	PSPC1	96	73.961	Cercocebus_atys
ENSPFOG00000003362	pspc1	78	66.667	ENSCLAG00000005241	PSPC1	92	67.696	Chinchilla_lanigera
ENSPFOG00000003362	pspc1	93	61.943	ENSCHOG00000008913	PSPC1	92	63.692	Choloepus_hoffmanni
ENSPFOG00000003362	pspc1	88	67.234	ENSCPBG00000020859	PSPC1	88	68.153	Chrysemys_picta_bellii
ENSPFOG00000003362	pspc1	60	57.792	ENSCSAVG00000003533	-	53	60.791	Ciona_savignyi
ENSPFOG00000003362	pspc1	81	54.608	ENSCANG00000018948	PSPC1	87	79.401	Colobus_angolensis_palliatus
ENSPFOG00000003362	pspc1	93	66.329	ENSCGRG00001018368	Pspc1	92	67.409	Cricetulus_griseus_chok1gshd
ENSPFOG00000003362	pspc1	93	66.329	ENSCGRG00000011724	Pspc1	92	67.409	Cricetulus_griseus_crigri
ENSPFOG00000003362	pspc1	100	84.200	ENSCVAG00000007679	-	99	83.752	Cyprinodon_variegatus
ENSPFOG00000003362	pspc1	97	62.427	ENSDARG00000006621	pspc1	100	64.706	Danio_rerio
ENSPFOG00000003362	pspc1	88	68.344	ENSDNOG00000011078	PSPC1	95	65.564	Dasypus_novemcinctus
ENSPFOG00000003362	pspc1	97	62.308	ENSDORG00000016050	Pspc1	90	65.696	Dipodomys_ordii
ENSPFOG00000003362	pspc1	54	75.248	ENSETEG00000000502	-	60	75.248	Echinops_telfairi
ENSPFOG00000003362	pspc1	58	45.511	ENSEBUG00000010133	pspc1	76	48.276	Eptatretus_burgeri
ENSPFOG00000003362	pspc1	92	55.227	ENSEBUG00000003964	-	72	61.538	Eptatretus_burgeri
ENSPFOG00000003362	pspc1	97	64.381	ENSEASG00005000119	PSPC1	92	71.809	Equus_asinus_asinus
ENSPFOG00000003362	pspc1	97	64.381	ENSECAG00000017286	PSPC1	92	71.809	Equus_caballus
ENSPFOG00000003362	pspc1	51	68.846	ENSEEUG00000011288	-	56	64.286	Erinaceus_europaeus
ENSPFOG00000003362	pspc1	98	67.105	ENSELUG00000003746	pspc1	97	67.105	Esox_lucius
ENSPFOG00000003362	pspc1	88	68.288	ENSFCAG00000027841	PSPC1	94	71.802	Felis_catus
ENSPFOG00000003362	pspc1	88	67.234	ENSFALG00000008750	PSPC1	92	65.795	Ficedula_albicollis
ENSPFOG00000003362	pspc1	92	66.870	ENSFDAG00000002617	PSPC1	94	67.959	Fukomys_damarensis
ENSPFOG00000003362	pspc1	100	61.996	ENSGMOG00000015074	pspc1	99	62.333	Gadus_morhua
ENSPFOG00000003362	pspc1	88	67.234	ENSGALG00000017142	PSPC1	90	67.149	Gallus_gallus
ENSPFOG00000003362	pspc1	76	95.897	ENSGAFG00000006327	pspc1	80	95.897	Gambusia_affinis
ENSPFOG00000003362	pspc1	100	73.981	ENSGACG00000014901	pspc1	99	77.654	Gasterosteus_aculeatus
ENSPFOG00000003362	pspc1	74	64.304	ENSGAGG00000017325	-	64	57.275	Gopherus_agassizii
ENSPFOG00000003362	pspc1	88	67.234	ENSGAGG00000019164	PSPC1	88	68.153	Gopherus_agassizii
ENSPFOG00000003362	pspc1	88	68.076	ENSGGOG00000003414	PSPC1	92	71.925	Gorilla_gorilla
ENSPFOG00000003362	pspc1	100	81.431	ENSHBUG00000001139	pspc1	99	81.818	Haplochromis_burtoni
ENSPFOG00000003362	pspc1	88	68.288	ENSHGLG00000018811	PSPC1	89	69.002	Heterocephalus_glaber_female
ENSPFOG00000003362	pspc1	60	75.896	ENSHGLG00100007962	PSPC1	93	76.393	Heterocephalus_glaber_male
ENSPFOG00000003362	pspc1	82	75.714	ENSHCOG00000013251	pspc1	96	72.273	Hippocampus_comes
ENSPFOG00000003362	pspc1	98	67.118	ENSIPUG00000013192	pspc1	96	67.698	Ictalurus_punctatus
ENSPFOG00000003362	pspc1	92	65.731	ENSSTOG00000026833	PSPC1	94	71.504	Ictidomys_tridecemlineatus
ENSPFOG00000003362	pspc1	88	67.865	ENSJJAG00000018334	Pspc1	92	66.802	Jaculus_jaculus
ENSPFOG00000003362	pspc1	99	62.062	ENSKMAG00000013525	-	96	75.410	Kryptolebias_marmoratus
ENSPFOG00000003362	pspc1	100	72.913	ENSLBEG00000004474	pspc1	100	72.171	Labrus_bergylta
ENSPFOG00000003362	pspc1	87	66.098	ENSLACG00000010762	PSPC1	88	66.667	Latimeria_chalumnae
ENSPFOG00000003362	pspc1	94	67.921	ENSLOCG00000010832	pspc1	97	68.588	Lepisosteus_oculatus
ENSPFOG00000003362	pspc1	93	66.599	ENSLAFG00000010968	PSPC1	92	67.611	Loxodonta_africana
ENSPFOG00000003362	pspc1	88	67.865	ENSMFAG00000032728	PSPC1	97	74.033	Macaca_fascicularis
ENSPFOG00000003362	pspc1	88	67.865	ENSMMUG00000020262	PSPC1	94	73.961	Macaca_mulatta
ENSPFOG00000003362	pspc1	88	67.865	ENSMNEG00000027401	PSPC1	90	70.000	Macaca_nemestrina
ENSPFOG00000003362	pspc1	76	67.397	ENSMLEG00000039043	PSPC1	99	66.898	Mandrillus_leucophaeus
ENSPFOG00000003362	pspc1	99	76.560	ENSMAMG00000004333	pspc1	99	76.181	Mastacembelus_armatus
ENSPFOG00000003362	pspc1	100	72.727	ENSMZEG00005005726	pspc1	99	71.346	Maylandia_zebra
ENSPFOG00000003362	pspc1	77	66.184	ENSMGAG00000015134	PSPC1	100	66.988	Meleagris_gallopavo
ENSPFOG00000003362	pspc1	84	63.575	ENSMAUG00000021067	Pspc1	90	63.134	Mesocricetus_auratus
ENSPFOG00000003362	pspc1	93	67.742	ENSMICG00000013970	PSPC1	94	70.681	Microcebus_murinus
ENSPFOG00000003362	pspc1	93	65.314	ENSMOCG00000006060	Pspc1	92	67.206	Microtus_ochrogaster
ENSPFOG00000003362	pspc1	74	71.429	ENSMMOG00000004352	pspc1	62	54.986	Mola_mola
ENSPFOG00000003362	pspc1	84	70.588	ENSMODG00000008029	PSPC1	71	68.845	Monodelphis_domestica
ENSPFOG00000003362	pspc1	99	80.196	ENSMALG00000008914	pspc1	99	80.196	Monopterus_albus
ENSPFOG00000003362	pspc1	93	65.923	MGP_CAROLIEiJ_G0019341	Pspc1	90	70.534	Mus_caroli
ENSPFOG00000003362	pspc1	93	66.126	ENSMUSG00000021938	Pspc1	90	70.534	Mus_musculus
ENSPFOG00000003362	pspc1	93	65.996	MGP_PahariEiJ_G0030359	Pspc1	90	70.534	Mus_pahari
ENSPFOG00000003362	pspc1	93	66.126	MGP_SPRETEiJ_G0020232	Pspc1	90	70.534	Mus_spretus
ENSPFOG00000003362	pspc1	88	68.076	ENSMPUG00000013347	PSPC1	95	66.406	Mustela_putorius_furo
ENSPFOG00000003362	pspc1	88	68.987	ENSMLUG00000017663	PSPC1	92	67.197	Myotis_lucifugus
ENSPFOG00000003362	pspc1	93	65.988	ENSNGAG00000011271	Pspc1	92	66.599	Nannospalax_galili
ENSPFOG00000003362	pspc1	76	76.154	ENSNBRG00000014059	pspc1	90	73.924	Neolamprologus_brichardi
ENSPFOG00000003362	pspc1	88	68.076	ENSNLEG00000001294	PSPC1	93	66.799	Nomascus_leucogenys
ENSPFOG00000003362	pspc1	88	59.660	ENSODEG00000007817	-	96	55.513	Octodon_degus
ENSPFOG00000003362	pspc1	88	61.229	ENSODEG00000019012	-	93	61.706	Octodon_degus
ENSPFOG00000003362	pspc1	100	81.081	ENSONIG00000012010	pspc1	99	81.081	Oreochromis_niloticus
ENSPFOG00000003362	pspc1	91	53.049	ENSOANG00000011381	-	84	57.639	Ornithorhynchus_anatinus
ENSPFOG00000003362	pspc1	76	66.423	ENSOANG00000009017	-	100	67.971	Ornithorhynchus_anatinus
ENSPFOG00000003362	pspc1	88	68.153	ENSOCUG00000006153	PSPC1	92	67.000	Oryctolagus_cuniculus
ENSPFOG00000003362	pspc1	100	77.778	ENSORLG00000004232	-	99	77.973	Oryzias_latipes
ENSPFOG00000003362	pspc1	100	78.752	ENSORLG00020000578	PSPC1	99	78.947	Oryzias_latipes_hni
ENSPFOG00000003362	pspc1	100	78.363	ENSORLG00015017480	pspc1	99	78.558	Oryzias_latipes_hsok
ENSPFOG00000003362	pspc1	88	68.288	ENSOGAG00000012643	PSPC1	92	67.683	Otolemur_garnettii
ENSPFOG00000003362	pspc1	87	68.365	ENSOARG00000014163	PSPC1	95	68.870	Ovis_aries
ENSPFOG00000003362	pspc1	88	61.945	ENSPPAG00000009836	PSPC1	92	77.812	Pan_paniscus
ENSPFOG00000003362	pspc1	88	68.288	ENSPPRG00000008833	PSPC1	95	66.406	Panthera_pardus
ENSPFOG00000003362	pspc1	85	62.418	ENSPTIG00000016917	PSPC1	90	63.797	Panthera_tigris_altaica
ENSPFOG00000003362	pspc1	84	69.526	ENSPTRG00000005677	PSPC1	92	71.925	Pan_troglodytes
ENSPFOG00000003362	pspc1	88	67.865	ENSPANG00000001992	PSPC1	96	74.033	Papio_anubis
ENSPFOG00000003362	pspc1	99	64.126	ENSPKIG00000003578	pspc1	98	65.589	Paramormyrops_kingsleyae
ENSPFOG00000003362	pspc1	88	66.596	ENSPSIG00000005168	PSPC1	88	66.879	Pelodiscus_sinensis
ENSPFOG00000003362	pspc1	66	74.709	ENSPMGG00000015135	pspc1	94	74.487	Periophthalmus_magnuspinnatus
ENSPFOG00000003362	pspc1	93	65.517	ENSPEMG00000015214	Pspc1	92	67.004	Peromyscus_maniculatus_bairdii
ENSPFOG00000003362	pspc1	59	43.137	ENSPMAG00000004618	pspc1	91	43.137	Petromyzon_marinus
ENSPFOG00000003362	pspc1	93	66.533	ENSPCIG00000017680	PSPC1	95	66.148	Phascolarctos_cinereus
ENSPFOG00000003362	pspc1	62	59.692	ENSPLAG00000004407	-	59	53.540	Poecilia_latipinna
ENSPFOG00000003362	pspc1	100	100.000	ENSPLAG00000011540	pspc1	99	100.000	Poecilia_latipinna
ENSPFOG00000003362	pspc1	62	59.877	ENSPMEG00000001025	-	59	53.437	Poecilia_mexicana
ENSPFOG00000003362	pspc1	100	99.609	ENSPMEG00000008322	pspc1	99	99.609	Poecilia_mexicana
ENSPFOG00000003362	pspc1	100	98.828	ENSPREG00000007786	pspc1	99	98.828	Poecilia_reticulata
ENSPFOG00000003362	pspc1	88	67.653	ENSPPYG00000005186	PSPC1	93	66.402	Pongo_abelii
ENSPFOG00000003362	pspc1	88	65.466	ENSPCOG00000014364	PSPC1	88	67.031	Propithecus_coquereli
ENSPFOG00000003362	pspc1	88	67.941	ENSPVAG00000005036	PSPC1	93	66.004	Pteropus_vampyrus
ENSPFOG00000003362	pspc1	100	73.114	ENSPNYG00000008893	pspc1	99	71.731	Pundamilia_nyererei
ENSPFOG00000003362	pspc1	96	66.409	ENSPNAG00000016511	pspc1	97	67.885	Pygocentrus_nattereri
ENSPFOG00000003362	pspc1	93	65.517	ENSRNOG00000020782	Pspc1	90	70.302	Rattus_norvegicus
ENSPFOG00000003362	pspc1	94	65.347	ENSRBIG00000036057	PSPC1	97	73.684	Rhinopithecus_bieti
ENSPFOG00000003362	pspc1	93	65.600	ENSRROG00000036334	PSPC1	92	71.925	Rhinopithecus_roxellana
ENSPFOG00000003362	pspc1	79	58.275	ENSSBOG00000028172	PSPC1	86	79.401	Saimiri_boliviensis_boliviensis
ENSPFOG00000003362	pspc1	93	61.876	ENSSHAG00000004696	PSPC1	95	61.628	Sarcophilus_harrisii
ENSPFOG00000003362	pspc1	88	68.930	ENSSFOG00015001395	pspc1	99	70.886	Scleropages_formosus
ENSPFOG00000003362	pspc1	100	77.127	ENSSMAG00000001761	pspc1	99	76.371	Scophthalmus_maximus
ENSPFOG00000003362	pspc1	100	76.340	ENSSDUG00000010651	pspc1	99	76.895	Seriola_dumerili
ENSPFOG00000003362	pspc1	100	70.760	ENSSLDG00000004284	pspc1	99	71.236	Seriola_lalandi_dorsalis
ENSPFOG00000003362	pspc1	84	64.365	ENSSARG00000000888	PSPC1	97	60.694	Sorex_araneus
ENSPFOG00000003362	pspc1	91	58.774	ENSSPUG00000008550	PSPC1	90	57.983	Sphenodon_punctatus
ENSPFOG00000003362	pspc1	87	52.550	ENSSPUG00000001136	-	63	50.231	Sphenodon_punctatus
ENSPFOG00000003362	pspc1	100	79.473	ENSSPAG00000001921	pspc1	99	78.531	Stegastes_partitus
ENSPFOG00000003362	pspc1	88	68.076	ENSSSCG00000009569	PSPC1	95	71.504	Sus_scrofa
ENSPFOG00000003362	pspc1	88	67.021	ENSTGUG00000011295	PSPC1	99	67.941	Taeniopygia_guttata
ENSPFOG00000003362	pspc1	99	70.736	ENSTRUG00000011335	pspc1	99	70.155	Takifugu_rubripes
ENSPFOG00000003362	pspc1	99	72.407	ENSTNIG00000010358	pspc1	99	72.407	Tetraodon_nigroviridis
ENSPFOG00000003362	pspc1	88	59.615	ENSTBEG00000002361	PSPC1	97	55.985	Tupaia_belangeri
ENSPFOG00000003362	pspc1	97	63.916	ENSTTRG00000003343	PSPC1	97	65.125	Tursiops_truncatus
ENSPFOG00000003362	pspc1	62	74.528	ENSUAMG00000012309	PSPC1	95	72.059	Ursus_americanus
ENSPFOG00000003362	pspc1	94	65.545	ENSUMAG00000013993	PSPC1	97	73.407	Ursus_maritimus
ENSPFOG00000003362	pspc1	76	67.229	ENSVPAG00000010029	PSPC1	100	68.460	Vicugna_pacos
ENSPFOG00000003362	pspc1	88	68.076	ENSVVUG00000006414	PSPC1	96	71.540	Vulpes_vulpes
ENSPFOG00000003362	pspc1	76	96.410	ENSXCOG00000017438	pspc1	91	96.410	Xiphophorus_couchianus
ENSPFOG00000003362	pspc1	76	97.179	ENSXMAG00000007929	pspc1	91	97.179	Xiphophorus_maculatus