EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000003938 (Gene tree)
Gene ID: 103146977
Gene Symbol: trnau1apb
Alias: -
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 9108 bases
Position: chrKI519782.1:432863-441970
Accession: 103146977
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000025677	RRM_1	PF00076.22	1.8e-31	1	2
ENSPFOP00000025677	RRM_1	PF00076.22	1.8e-31	2	2
ENSPFOP00000003892	RRM_1	PF00076.22	2.4e-31	1	2
ENSPFOP00000003892	RRM_1	PF00076.22	2.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000003900	-	3596	-	ENSPFOP00000003892	344 (aa)	XP_007565154	A0A087XDN9
ENSPFOT00000028875	-	3515	-	ENSPFOP00000025677	316 (aa)	-	A0A096M2N6

Gene Model

Click here to download ENSPFOG00000003938's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000003938's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000003938	trnau1apb	59	30.000	ENSPFOG00000022243	tia1l	68	30.000
ENSPFOG00000003938	trnau1apb	74	30.168	ENSPFOG00000002682	pabpc4	59	30.168
ENSPFOG00000003938	trnau1apb	56	31.868	ENSPFOG00000004539	-	68	31.868
ENSPFOG00000003938	trnau1apb	95	44.156	ENSPFOG00000008100	trnau1apa	93	45.277

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000003938	trnau1apb	99	74.052	ENSAPOG00000010086	trnau1apb	100	76.176	Acanthochromis_polyacanthus
ENSPFOG00000003938	trnau1apb	100	81.481	ENSACIG00000001863	trnau1apb	100	81.481	Amphilophus_citrinellus
ENSPFOG00000003938	trnau1apb	99	84.104	ENSAOCG00000011891	trnau1apb	100	82.471	Amphiprion_ocellaris
ENSPFOG00000003938	trnau1apb	100	79.464	ENSAPEG00000008029	trnau1apb	100	82.948	Amphiprion_percula
ENSPFOG00000003938	trnau1apb	99	83.526	ENSATEG00000002196	trnau1apb	100	81.609	Anabas_testudineus
ENSPFOG00000003938	trnau1apb	100	81.346	ENSACLG00000003016	trnau1apb	100	81.346	Astatotilapia_calliptera
ENSPFOG00000003938	trnau1apb	99	64.706	ENSAMXG00000001805	trnau1apb	99	66.250	Astyanax_mexicanus
ENSPFOG00000003938	trnau1apb	99	79.827	ENSCSEG00000018215	trnau1apb	98	81.121	Cynoglossus_semilaevis
ENSPFOG00000003938	trnau1apb	95	88.379	ENSCVAG00000017866	trnau1apb	100	88.379	Cyprinodon_variegatus
ENSPFOG00000003938	trnau1apb	99	65.204	ENSDARG00000056475	trnau1apb	98	64.151	Danio_rerio
ENSPFOG00000003938	trnau1apb	100	64.634	ENSELUG00000016683	trnau1apb	99	65.350	Esox_lucius
ENSPFOG00000003938	trnau1apb	100	91.570	ENSFHEG00000001267	trnau1apb	100	91.570	Fundulus_heteroclitus
ENSPFOG00000003938	trnau1apb	100	69.822	ENSGMOG00000001160	trnau1apb	100	71.965	Gadus_morhua
ENSPFOG00000003938	trnau1apb	99	69.653	ENSGAFG00000006770	trnau1apb	100	80.818	Gambusia_affinis
ENSPFOG00000003938	trnau1apb	100	75.529	ENSGACG00000014944	trnau1apb	100	76.577	Gasterosteus_aculeatus
ENSPFOG00000003938	trnau1apb	69	42.342	ENSGAGG00000022384	-	78	42.534	Gopherus_agassizii
ENSPFOG00000003938	trnau1apb	100	84.150	ENSHBUG00000018944	trnau1apb	100	82.521	Haplochromis_burtoni
ENSPFOG00000003938	trnau1apb	71	80.357	ENSHCOG00000011350	trnau1apb	78	78.138	Hippocampus_comes
ENSPFOG00000003938	trnau1apb	99	63.467	ENSIPUG00000008843	tsp1l	99	65.217	Ictalurus_punctatus
ENSPFOG00000003938	trnau1apb	69	91.324	ENSKMAG00000010082	trnau1apb	100	87.283	Kryptolebias_marmoratus
ENSPFOG00000003938	trnau1apb	99	79.130	ENSLBEG00000020480	trnau1apb	100	78.551	Labrus_bergylta
ENSPFOG00000003938	trnau1apb	100	54.180	ENSLOCG00000013175	trnau1apb	99	54.908	Lepisosteus_oculatus
ENSPFOG00000003938	trnau1apb	99	82.948	ENSMAMG00000012192	trnau1apb	100	84.104	Mastacembelus_armatus
ENSPFOG00000003938	trnau1apb	100	84.150	ENSMZEG00005014852	trnau1apb	100	82.521	Maylandia_zebra
ENSPFOG00000003938	trnau1apb	71	37.652	ENSMGAG00000003234	-	99	40.000	Meleagris_gallopavo
ENSPFOG00000003938	trnau1apb	97	72.493	ENSMMOG00000021521	trnau1apb	100	72.493	Mola_mola
ENSPFOG00000003938	trnau1apb	99	75.796	ENSMALG00000003772	trnau1apb	100	75.633	Monopterus_albus
ENSPFOG00000003938	trnau1apb	97	81.388	ENSNBRG00000000751	trnau1apb	99	81.388	Neolamprologus_brichardi
ENSPFOG00000003938	trnau1apb	99	79.683	ENSONIG00000016639	trnau1apb	100	79.683	Oreochromis_niloticus
ENSPFOG00000003938	trnau1apb	100	77.168	ENSORLG00000013265	trnau1apb	100	81.844	Oryzias_latipes
ENSPFOG00000003938	trnau1apb	100	76.657	ENSORLG00020004464	trnau1apb	100	81.268	Oryzias_latipes_hni
ENSPFOG00000003938	trnau1apb	100	76.657	ENSORLG00015021098	trnau1apb	100	81.268	Oryzias_latipes_hsok
ENSPFOG00000003938	trnau1apb	100	78.674	ENSOMEG00000016531	trnau1apb	100	84.150	Oryzias_melastigma
ENSPFOG00000003938	trnau1apb	99	55.172	ENSPKIG00000007995	trnau1apb	99	61.446	Paramormyrops_kingsleyae
ENSPFOG00000003938	trnau1apb	69	43.243	ENSPSIG00000004189	-	78	42.986	Pelodiscus_sinensis
ENSPFOG00000003938	trnau1apb	99	64.955	ENSPMGG00000018509	trnau1apb	97	77.824	Periophthalmus_magnuspinnatus
ENSPFOG00000003938	trnau1apb	100	100.000	ENSPLAG00000015480	trnau1apb	100	100.000	Poecilia_latipinna
ENSPFOG00000003938	trnau1apb	100	100.000	ENSPMEG00000012743	trnau1apb	100	100.000	Poecilia_mexicana
ENSPFOG00000003938	trnau1apb	100	97.093	ENSPREG00000015035	trnau1apb	100	97.093	Poecilia_reticulata
ENSPFOG00000003938	trnau1apb	100	78.899	ENSPNYG00000012127	trnau1apb	100	78.899	Pundamilia_nyererei
ENSPFOG00000003938	trnau1apb	99	63.692	ENSPNAG00000019138	trnau1apb	98	65.528	Pygocentrus_nattereri
ENSPFOG00000003938	trnau1apb	99	61.212	ENSSFOG00015014158	trnau1apb	99	63.473	Scleropages_formosus
ENSPFOG00000003938	trnau1apb	99	79.360	ENSSMAG00000001745	trnau1apb	99	79.651	Scophthalmus_maximus
ENSPFOG00000003938	trnau1apb	99	83.478	ENSSDUG00000011109	trnau1apb	99	81.844	Seriola_dumerili
ENSPFOG00000003938	trnau1apb	99	83.188	ENSSLDG00000012947	trnau1apb	99	81.268	Seriola_lalandi_dorsalis
ENSPFOG00000003938	trnau1apb	71	33.948	ENSSPUG00000016701	-	82	36.260	Sphenodon_punctatus
ENSPFOG00000003938	trnau1apb	99	84.971	ENSSPAG00000006917	trnau1apb	100	83.908	Stegastes_partitus
ENSPFOG00000003938	trnau1apb	100	76.012	ENSTRUG00000008608	trnau1apb	100	76.945	Takifugu_rubripes
ENSPFOG00000003938	trnau1apb	99	72.293	ENSTNIG00000000916	trnau1apb	100	71.019	Tetraodon_nigroviridis
ENSPFOG00000003938	trnau1apb	94	84.877	ENSXCOG00000007974	trnau1apb	94	84.877	Xiphophorus_couchianus
ENSPFOG00000003938	trnau1apb	100	98.256	ENSXMAG00000029918	trnau1apb	100	98.256	Xiphophorus_maculatus