EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000004025 (Gene tree)
Gene ID: 103148922
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 5982 bases
Position: chrKI519825.1:118853-124834
Accession: 103148922
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000003951	PRP38	PF03371.15	1.8e-55	1	1
ENSPFOP00000024171	PRP38	PF03371.15	6e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000003959	-	2556	-	ENSPFOP00000003951	463 (aa)	XP_007567978	A0A087XDU8
ENSPFOT00000022216	-	836	-	ENSPFOP00000024171	189 (aa)	-	A0A096LYD0

Gene Model

Click here to download ENSPFOG00000004025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000004025's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000004025	-	88	95.210	ENSACIG00000016459	-	97	95.210	Amphilophus_citrinellus
ENSPFOG00000004025	-	100	84.731	ENSATEG00000014482	-	100	84.516	Anabas_testudineus
ENSPFOG00000004025	-	81	93.464	ENSAMXG00000039494	-	50	85.223	Astyanax_mexicanus
ENSPFOG00000004025	-	81	92.208	ENSBTAG00000047874	PRPF38B	85	61.925	Bos_taurus
ENSPFOG00000004025	-	77	54.795	WBGene00022434	Y108G3AL.2	61	53.266	Caenorhabditis_elegans
ENSPFOG00000004025	-	71	92.647	ENSCAFG00020010992	-	91	57.534	Canis_lupus_dingo
ENSPFOG00000004025	-	81	92.208	ENSCHIG00000024357	-	85	61.925	Capra_hircus
ENSPFOG00000004025	-	78	95.238	ENSCPOG00000039545	-	82	63.656	Cavia_porcellus
ENSPFOG00000004025	-	78	95.238	ENSCLAG00000005801	-	82	62.821	Chinchilla_lanigera
ENSPFOG00000004025	-	61	93.103	ENSCHOG00000008972	-	98	59.773	Choloepus_hoffmanni
ENSPFOG00000004025	-	84	90.000	ENSCPBG00000028299	-	83	64.331	Chrysemys_picta_bellii
ENSPFOG00000004025	-	77	74.483	ENSCSAVG00000009443	-	71	74.479	Ciona_savignyi
ENSPFOG00000004025	-	87	95.122	ENSCSEG00000015030	-	100	78.755	Cynoglossus_semilaevis
ENSPFOG00000004025	-	98	98.387	ENSCVAG00000005543	-	89	98.387	Cyprinodon_variegatus
ENSPFOG00000004025	-	83	71.154	FBgn0030468	CG1622	89	75.316	Drosophila_melanogaster
ENSPFOG00000004025	-	77	93.151	ENSETEG00000014690	-	85	68.814	Echinops_telfairi
ENSPFOG00000004025	-	88	88.690	ENSELUG00000010390	-	97	69.674	Esox_lucius
ENSPFOG00000004025	-	50	94.681	ENSFALG00000002673	-	86	58.202	Ficedula_albicollis
ENSPFOG00000004025	-	87	90.854	ENSGMOG00000012080	-	99	75.840	Gadus_morhua
ENSPFOG00000004025	-	84	90.506	ENSGALG00000001972	-	92	62.008	Gallus_gallus
ENSPFOG00000004025	-	100	98.704	ENSGAFG00000008943	-	100	98.704	Gambusia_affinis
ENSPFOG00000004025	-	84	90.000	ENSGAGG00000001563	-	83	64.331	Gopherus_agassizii
ENSPFOG00000004025	-	78	95.238	ENSHGLG00000016583	PRPF38B	82	63.113	Heterocephalus_glaber_female
ENSPFOG00000004025	-	78	95.238	ENSHGLG00100015525	-	82	62.900	Heterocephalus_glaber_male
ENSPFOG00000004025	-	100	79.140	ENSHCOG00000001071	-	100	79.310	Hippocampus_comes
ENSPFOG00000004025	-	87	95.732	ENSKMAG00000005540	-	100	82.030	Kryptolebias_marmoratus
ENSPFOG00000004025	-	88	83.908	ENSLACG00000015511	-	76	66.262	Latimeria_chalumnae
ENSPFOG00000004025	-	80	92.810	ENSMOCG00000020285	-	82	62.876	Microtus_ochrogaster
ENSPFOG00000004025	-	100	82.479	ENSMMOG00000011639	-	100	79.399	Mola_mola
ENSPFOG00000004025	-	78	95.238	ENSMODG00000002350	-	87	84.672	Monodelphis_domestica
ENSPFOG00000004025	-	100	87.179	ENSMALG00000019479	-	100	84.086	Monopterus_albus
ENSPFOG00000004025	-	87	95.152	ENSNBRG00000019221	-	98	95.152	Neolamprologus_brichardi
ENSPFOG00000004025	-	100	87.957	ENSONIG00000010129	-	100	87.312	Oreochromis_niloticus
ENSPFOG00000004025	-	85	89.441	ENSOANG00000007343	-	92	62.069	Ornithorhynchus_anatinus
ENSPFOG00000004025	-	92	97.688	ENSORLG00000015621	-	100	97.688	Oryzias_latipes
ENSPFOG00000004025	-	92	97.701	ENSORLG00020016276	-	100	97.701	Oryzias_latipes_hni
ENSPFOG00000004025	-	98	97.312	ENSORLG00015016270	-	90	97.312	Oryzias_latipes_hsok
ENSPFOG00000004025	-	97	96.739	ENSOMEG00000022050	-	100	96.739	Oryzias_melastigma
ENSPFOG00000004025	-	78	95.238	ENSOGAG00000027048	-	80	64.474	Otolemur_garnettii
ENSPFOG00000004025	-	75	95.775	ENSOARG00000018899	-	82	63.297	Ovis_aries
ENSPFOG00000004025	-	87	90.419	ENSPKIG00000017291	-	84	65.885	Paramormyrops_kingsleyae
ENSPFOG00000004025	-	81	94.118	ENSPKIG00000004815	-	96	64.754	Paramormyrops_kingsleyae
ENSPFOG00000004025	-	84	90.000	ENSPSIG00000016569	-	83	63.057	Pelodiscus_sinensis
ENSPFOG00000004025	-	85	90.062	ENSPMGG00000017585	-	99	90.062	Periophthalmus_magnuspinnatus
ENSPFOG00000004025	-	75	78.912	ENSPMAG00000007150	-	94	78.378	Petromyzon_marinus
ENSPFOG00000004025	-	100	99.784	ENSPLAG00000019842	-	100	99.784	Poecilia_latipinna
ENSPFOG00000004025	-	100	99.784	ENSPMEG00000004807	-	97	99.784	Poecilia_mexicana
ENSPFOG00000004025	-	100	98.272	ENSPREG00000015599	-	99	100.000	Poecilia_reticulata
ENSPFOG00000004025	-	81	92.810	ENSPNAG00000017484	-	95	69.136	Pygocentrus_nattereri
ENSPFOG00000004025	-	78	95.238	ENSRNOG00000020438	Prpf38b	83	63.113	Rattus_norvegicus
ENSPFOG00000004025	-	97	86.486	ENSSFOG00015011251	-	96	86.486	Scleropages_formosus
ENSPFOG00000004025	-	89	83.929	ENSSFOG00015004405	-	99	78.261	Scleropages_formosus
ENSPFOG00000004025	-	97	92.896	ENSSMAG00000001781	-	99	92.896	Scophthalmus_maximus
ENSPFOG00000004025	-	97	94.536	ENSSDUG00000016574	-	99	94.536	Seriola_dumerili
ENSPFOG00000004025	-	97	94.536	ENSSLDG00000023487	-	99	94.536	Seriola_lalandi_dorsalis
ENSPFOG00000004025	-	83	90.506	ENSSPUG00000017742	-	91	61.905	Sphenodon_punctatus
ENSPFOG00000004025	-	99	78.879	ENSTRUG00000011765	-	100	78.017	Takifugu_rubripes
ENSPFOG00000004025	-	86	92.638	ENSTNIG00000015299	-	99	71.183	Tetraodon_nigroviridis
ENSPFOG00000004025	-	78	78.231	ENSTBEG00000007504	-	87	57.792	Tupaia_belangeri
ENSPFOG00000004025	-	78	95.238	ENSTTRG00000006479	-	85	61.715	Tursiops_truncatus
ENSPFOG00000004025	-	76	69.930	ENSVPAG00000005541	-	81	55.044	Vicugna_pacos
ENSPFOG00000004025	-	80	94.118	ENSXETG00000005260	prpf38b	88	61.915	Xenopus_tropicalis
ENSPFOG00000004025	-	100	98.488	ENSXCOG00000008329	-	100	98.488	Xiphophorus_couchianus
ENSPFOG00000004025	-	100	98.488	ENSXMAG00000023831	-	100	98.488	Xiphophorus_maculatus