EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000004458 (Gene tree)
Gene ID: 103136364
Gene Symbol: ptcd1
Alias: -
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 5429 bases
Position: chrKI519642.1:217223-222651
Accession: 103136364
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000004493	PPR	PF01535.20	5.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000004501	-	3730	-	ENSPFOP00000004493	700 (aa)	XP_007549629	A0A087XFE0

Gene Model

Click here to download ENSPFOG00000004458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000004458's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000004458	ptcd1	82	46.812	ENSG00000248919	ATP5MF-PTCD1	80	45.677	Homo_sapiens
ENSPFOG00000004458	ptcd1	82	46.812	ENSG00000106246	PTCD1	86	45.677	Homo_sapiens
ENSPFOG00000004458	ptcd1	88	62.440	ENSAPOG00000010679	ptcd1	96	61.958	Acanthochromis_polyacanthus
ENSPFOG00000004458	ptcd1	82	49.000	ENSAMEG00000006224	-	78	48.833	Ailuropoda_melanoleuca
ENSPFOG00000004458	ptcd1	87	70.161	ENSACIG00000017861	ptcd1	90	70.161	Amphilophus_citrinellus
ENSPFOG00000004458	ptcd1	98	62.571	ENSAOCG00000020741	-	98	61.506	Amphiprion_ocellaris
ENSPFOG00000004458	ptcd1	87	64.526	ENSAOCG00000022617	ptcd1	93	63.724	Amphiprion_ocellaris
ENSPFOG00000004458	ptcd1	99	61.798	ENSAPEG00000022632	ptcd1	99	60.839	Amphiprion_percula
ENSPFOG00000004458	ptcd1	95	64.307	ENSATEG00000007016	ptcd1	95	64.173	Anabas_testudineus
ENSPFOG00000004458	ptcd1	82	47.350	ENSAPLG00000006862	-	86	48.624	Anas_platyrhynchos
ENSPFOG00000004458	ptcd1	87	45.800	ENSACAG00000012871	-	80	46.569	Anolis_carolinensis
ENSPFOG00000004458	ptcd1	82	47.333	ENSANAG00000035790	-	86	47.264	Aotus_nancymaae
ENSPFOG00000004458	ptcd1	99	65.223	ENSACLG00000002824	ptcd1	99	65.223	Astatotilapia_calliptera
ENSPFOG00000004458	ptcd1	88	48.792	ENSAMXG00000037292	ptcd1	87	50.560	Astyanax_mexicanus
ENSPFOG00000004458	ptcd1	84	47.419	ENSBTAG00000020440	-	75	47.581	Bos_taurus
ENSPFOG00000004458	ptcd1	82	47.667	ENSCJAG00000015815	-	90	45.879	Callithrix_jacchus
ENSPFOG00000004458	ptcd1	86	48.107	ENSCAFG00000015055	-	83	47.476	Canis_familiaris
ENSPFOG00000004458	ptcd1	86	48.107	ENSCAFG00020014480	-	83	47.476	Canis_lupus_dingo
ENSPFOG00000004458	ptcd1	92	46.302	ENSCHIG00000027000	-	93	45.710	Capra_hircus
ENSPFOG00000004458	ptcd1	82	46.922	ENSTSYG00000029495	-	84	46.854	Carlito_syrichta
ENSPFOG00000004458	ptcd1	83	47.360	ENSCAPG00000014660	-	90	47.754	Cavia_aperea
ENSPFOG00000004458	ptcd1	83	48.419	ENSCPOG00000001780	-	85	48.419	Cavia_porcellus
ENSPFOG00000004458	ptcd1	82	48.485	ENSCCAG00000034025	-	84	48.409	Cebus_capucinus
ENSPFOG00000004458	ptcd1	82	48.398	ENSCATG00000040859	-	90	46.395	Cercocebus_atys
ENSPFOG00000004458	ptcd1	82	48.409	ENSCLAG00000006354	-	84	48.099	Chinchilla_lanigera
ENSPFOG00000004458	ptcd1	77	46.643	ENSCSAG00000017794	-	82	46.221	Chlorocebus_sabaeus
ENSPFOG00000004458	ptcd1	83	45.354	ENSCPBG00000020866	-	85	45.197	Chrysemys_picta_bellii
ENSPFOG00000004458	ptcd1	86	44.757	ENSCANG00000023441	-	90	44.757	Colobus_angolensis_palliatus
ENSPFOG00000004458	ptcd1	83	47.525	ENSCGRG00001023686	Ptcd1	83	47.731	Cricetulus_griseus_chok1gshd
ENSPFOG00000004458	ptcd1	83	47.525	ENSCGRG00000015031	Ptcd1	83	47.731	Cricetulus_griseus_crigri
ENSPFOG00000004458	ptcd1	92	60.511	ENSCSEG00000002378	ptcd1	93	60.301	Cynoglossus_semilaevis
ENSPFOG00000004458	ptcd1	99	74.499	ENSCVAG00000015826	ptcd1	98	73.926	Cyprinodon_variegatus
ENSPFOG00000004458	ptcd1	93	75.460	ENSCVAG00000003621	ptcd1	98	75.153	Cyprinodon_variegatus
ENSPFOG00000004458	ptcd1	92	48.204	ENSDARG00000076176	ptcd1	94	48.060	Danio_rerio
ENSPFOG00000004458	ptcd1	82	48.662	ENSDNOG00000009957	-	84	48.425	Dasypus_novemcinctus
ENSPFOG00000004458	ptcd1	82	45.439	ENSDORG00000000740	Ptcd1	86	45.663	Dipodomys_ordii
ENSPFOG00000004458	ptcd1	83	38.426	ENSEBUG00000014515	ptcd1	93	39.107	Eptatretus_burgeri
ENSPFOG00000004458	ptcd1	82	48.926	ENSEASG00005002480	-	86	48.408	Equus_asinus_asinus
ENSPFOG00000004458	ptcd1	82	49.091	ENSECAG00000016617	-	86	48.408	Equus_caballus
ENSPFOG00000004458	ptcd1	84	57.416	ENSELUG00000016517	ptcd1	82	57.861	Esox_lucius
ENSPFOG00000004458	ptcd1	86	47.244	ENSFCAG00000015069	-	89	47.402	Felis_catus
ENSPFOG00000004458	ptcd1	89	44.294	ENSFALG00000013803	-	91	44.411	Ficedula_albicollis
ENSPFOG00000004458	ptcd1	84	48.071	ENSFDAG00000006393	-	86	48.071	Fukomys_damarensis
ENSPFOG00000004458	ptcd1	79	78.584	ENSFHEG00000012491	ptcd1	95	78.584	Fundulus_heteroclitus
ENSPFOG00000004458	ptcd1	87	62.058	ENSGMOG00000007639	ptcd1	98	61.353	Gadus_morhua
ENSPFOG00000004458	ptcd1	82	46.217	ENSGALG00000004711	-	78	48.115	Gallus_gallus
ENSPFOG00000004458	ptcd1	99	90.844	ENSGAFG00000013175	ptcd1	100	90.844	Gambusia_affinis
ENSPFOG00000004458	ptcd1	90	67.141	ENSGACG00000016607	ptcd1	97	67.035	Gasterosteus_aculeatus
ENSPFOG00000004458	ptcd1	78	46.561	ENSGAGG00000021832	-	84	45.890	Gopherus_agassizii
ENSPFOG00000004458	ptcd1	85	45.048	ENSGGOG00000015123	-	86	45.677	Gorilla_gorilla
ENSPFOG00000004458	ptcd1	92	68.293	ENSHBUG00000018275	ptcd1	91	68.293	Haplochromis_burtoni
ENSPFOG00000004458	ptcd1	87	47.105	ENSHGLG00000017621	-	89	47.261	Heterocephalus_glaber_female
ENSPFOG00000004458	ptcd1	87	47.105	ENSHGLG00100007218	-	89	47.261	Heterocephalus_glaber_male
ENSPFOG00000004458	ptcd1	91	58.842	ENSHCOG00000010784	ptcd1	91	58.787	Hippocampus_comes
ENSPFOG00000004458	ptcd1	84	47.720	ENSSTOG00000001682	-	89	47.567	Ictidomys_tridecemlineatus
ENSPFOG00000004458	ptcd1	89	45.524	ENSJJAG00000000319	Ptcd1	89	45.984	Jaculus_jaculus
ENSPFOG00000004458	ptcd1	94	69.701	ENSKMAG00000008708	ptcd1	94	69.254	Kryptolebias_marmoratus
ENSPFOG00000004458	ptcd1	99	61.570	ENSLBEG00000008061	ptcd1	99	61.088	Labrus_bergylta
ENSPFOG00000004458	ptcd1	84	49.261	ENSLACG00000011172	ptcd1	82	49.239	Latimeria_chalumnae
ENSPFOG00000004458	ptcd1	85	49.768	ENSLOCG00000004833	ptcd1	93	49.916	Lepisosteus_oculatus
ENSPFOG00000004458	ptcd1	83	47.195	ENSLAFG00000002588	-	76	48.807	Loxodonta_africana
ENSPFOG00000004458	ptcd1	82	48.398	ENSMFAG00000041324	-	90	46.395	Macaca_fascicularis
ENSPFOG00000004458	ptcd1	82	48.229	ENSMMUG00000030408	-	90	46.238	Macaca_mulatta
ENSPFOG00000004458	ptcd1	82	48.398	ENSMNEG00000043786	-	90	46.395	Macaca_nemestrina
ENSPFOG00000004458	ptcd1	82	36.426	ENSMLEG00000031179	-	81	36.410	Mandrillus_leucophaeus
ENSPFOG00000004458	ptcd1	99	63.077	ENSMAMG00000007623	ptcd1	97	62.937	Mastacembelus_armatus
ENSPFOG00000004458	ptcd1	99	65.363	ENSMZEG00005012722	ptcd1	99	65.363	Maylandia_zebra
ENSPFOG00000004458	ptcd1	81	47.333	ENSMGAG00000004211	-	72	48.370	Meleagris_gallopavo
ENSPFOG00000004458	ptcd1	82	46.901	ENSMICG00000017428	-	84	47.088	Microcebus_murinus
ENSPFOG00000004458	ptcd1	99	64.286	ENSMMOG00000020243	ptcd1	94	70.147	Mola_mola
ENSPFOG00000004458	ptcd1	87	44.946	ENSMODG00000001350	-	82	46.305	Monodelphis_domestica
ENSPFOG00000004458	ptcd1	99	61.773	ENSMALG00000018442	ptcd1	99	62.117	Monopterus_albus
ENSPFOG00000004458	ptcd1	87	45.652	MGP_CAROLIEiJ_G0028011	Ptcd1	91	45.652	Mus_caroli
ENSPFOG00000004458	ptcd1	87	44.632	ENSMUSG00000029624	Ptcd1	91	45.497	Mus_musculus
ENSPFOG00000004458	ptcd1	82	48.229	MGP_PahariEiJ_G0024580	Ptcd1	84	48.229	Mus_pahari
ENSPFOG00000004458	ptcd1	87	44.632	MGP_SPRETEiJ_G0029012	Ptcd1	91	45.807	Mus_spretus
ENSPFOG00000004458	ptcd1	92	45.627	ENSMPUG00000016518	-	89	47.950	Mustela_putorius_furo
ENSPFOG00000004458	ptcd1	82	48.911	ENSMLUG00000010994	-	78	49.167	Myotis_lucifugus
ENSPFOG00000004458	ptcd1	97	63.909	ENSNBRG00000010079	ptcd1	95	67.223	Neolamprologus_brichardi
ENSPFOG00000004458	ptcd1	72	46.780	ENSNLEG00000011060	-	88	46.780	Nomascus_leucogenys
ENSPFOG00000004458	ptcd1	83	46.179	ENSMEUG00000006930	-	86	45.634	Notamacropus_eugenii
ENSPFOG00000004458	ptcd1	75	58.621	ENSOPRG00000013647	-	74	61.345	Ochotona_princeps
ENSPFOG00000004458	ptcd1	86	67.377	ENSONIG00000003168	ptcd1	100	67.377	Oreochromis_niloticus
ENSPFOG00000004458	ptcd1	82	45.305	ENSOANG00000007728	-	79	44.811	Ornithorhynchus_anatinus
ENSPFOG00000004458	ptcd1	87	46.519	ENSOCUG00000010584	-	82	47.245	Oryctolagus_cuniculus
ENSPFOG00000004458	ptcd1	89	69.968	ENSORLG00000009275	ptcd1	91	68.998	Oryzias_latipes
ENSPFOG00000004458	ptcd1	96	66.617	ENSORLG00020000988	ptcd1	98	65.735	Oryzias_latipes_hni
ENSPFOG00000004458	ptcd1	96	65.932	ENSORLG00015010557	ptcd1	98	65.198	Oryzias_latipes_hsok
ENSPFOG00000004458	ptcd1	96	66.276	ENSOMEG00000020627	ptcd1	96	67.580	Oryzias_melastigma
ENSPFOG00000004458	ptcd1	82	46.644	ENSOGAG00000010877	-	85	46.578	Otolemur_garnettii
ENSPFOG00000004458	ptcd1	89	42.365	ENSOARG00000018676	-	87	43.333	Ovis_aries
ENSPFOG00000004458	ptcd1	82	46.812	ENSPPAG00000036024	-	83	46.231	Pan_paniscus
ENSPFOG00000004458	ptcd1	82	49.164	ENSPPRG00000003478	-	84	49.164	Panthera_pardus
ENSPFOG00000004458	ptcd1	82	46.812	ENSPTRG00000019452	-	83	46.231	Pan_troglodytes
ENSPFOG00000004458	ptcd1	82	48.567	ENSPANG00000016730	-	90	46.552	Papio_anubis
ENSPFOG00000004458	ptcd1	82	50.761	ENSPKIG00000014215	ptcd1	85	51.273	Paramormyrops_kingsleyae
ENSPFOG00000004458	ptcd1	82	46.141	ENSPSIG00000011184	-	92	46.486	Pelodiscus_sinensis
ENSPFOG00000004458	ptcd1	71	40.927	ENSPMAG00000009667	ptcd1	99	40.927	Petromyzon_marinus
ENSPFOG00000004458	ptcd1	82	46.154	ENSPCIG00000024778	-	81	45.752	Phascolarctos_cinereus
ENSPFOG00000004458	ptcd1	100	98.857	ENSPLAG00000011051	ptcd1	100	98.857	Poecilia_latipinna
ENSPFOG00000004458	ptcd1	100	98.714	ENSPMEG00000020547	ptcd1	100	98.714	Poecilia_mexicana
ENSPFOG00000004458	ptcd1	100	92.571	ENSPREG00000000059	ptcd1	100	92.286	Poecilia_reticulata
ENSPFOG00000004458	ptcd1	82	46.922	ENSPPYG00000017377	-	89	46.922	Pongo_abelii
ENSPFOG00000004458	ptcd1	72	61.417	ENSPCAG00000001852	-	82	61.417	Procavia_capensis
ENSPFOG00000004458	ptcd1	82	47.723	ENSPCOG00000018596	-	84	47.739	Propithecus_coquereli
ENSPFOG00000004458	ptcd1	53	56.618	ENSPVAG00000007529	-	53	61.674	Pteropus_vampyrus
ENSPFOG00000004458	ptcd1	92	68.293	ENSPNYG00000019993	ptcd1	91	68.293	Pundamilia_nyererei
ENSPFOG00000004458	ptcd1	90	50.855	ENSPNAG00000014931	ptcd1	95	49.403	Pygocentrus_nattereri
ENSPFOG00000004458	ptcd1	85	46.538	ENSRNOG00000000987	Ptcd1	87	47.117	Rattus_norvegicus
ENSPFOG00000004458	ptcd1	91	44.328	ENSRBIG00000043393	-	90	45.383	Rhinopithecus_bieti
ENSPFOG00000004458	ptcd1	91	44.048	ENSRROG00000036420	-	90	46.384	Rhinopithecus_roxellana
ENSPFOG00000004458	ptcd1	82	47.819	ENSSBOG00000024114	-	90	45.227	Saimiri_boliviensis_boliviensis
ENSPFOG00000004458	ptcd1	82	47.455	ENSSHAG00000011376	-	88	48.136	Sarcophilus_harrisii
ENSPFOG00000004458	ptcd1	86	50.558	ENSSFOG00015007909	ptcd1	81	51.316	Scleropages_formosus
ENSPFOG00000004458	ptcd1	89	65.135	ENSSMAG00000000218	ptcd1	99	64.734	Scophthalmus_maximus
ENSPFOG00000004458	ptcd1	89	67.244	ENSSDUG00000015671	ptcd1	88	70.016	Seriola_dumerili
ENSPFOG00000004458	ptcd1	89	66.875	ENSSLDG00000014261	ptcd1	87	70.000	Seriola_lalandi_dorsalis
ENSPFOG00000004458	ptcd1	88	43.862	ENSSPUG00000003540	-	89	43.910	Sphenodon_punctatus
ENSPFOG00000004458	ptcd1	99	64.880	ENSSPAG00000011049	ptcd1	98	64.714	Stegastes_partitus
ENSPFOG00000004458	ptcd1	82	48.571	ENSSSCG00000007622	-	89	48.495	Sus_scrofa
ENSPFOG00000004458	ptcd1	82	46.508	ENSTGUG00000007563	-	95	46.520	Taeniopygia_guttata
ENSPFOG00000004458	ptcd1	90	67.130	ENSTRUG00000013471	ptcd1	90	66.717	Takifugu_rubripes
ENSPFOG00000004458	ptcd1	90	65.785	ENSTNIG00000008271	ptcd1	90	66.987	Tetraodon_nigroviridis
ENSPFOG00000004458	ptcd1	82	48.013	ENSTBEG00000011021	-	84	48.013	Tupaia_belangeri
ENSPFOG00000004458	ptcd1	84	47.267	ENSTTRG00000003006	-	87	47.267	Tursiops_truncatus
ENSPFOG00000004458	ptcd1	82	47.833	ENSUAMG00000008049	-	84	48.167	Ursus_americanus
ENSPFOG00000004458	ptcd1	86	47.950	ENSVVUG00000008836	-	89	47.319	Vulpes_vulpes
ENSPFOG00000004458	ptcd1	84	46.926	ENSXETG00000009891	ptcd1	87	46.290	Xenopus_tropicalis
ENSPFOG00000004458	ptcd1	99	91.989	ENSXMAG00000015540	ptcd1	100	91.989	Xiphophorus_maculatus