EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000005025 (Gene tree)
Gene ID: 103151704
Gene Symbol: polr1a
Alias: -
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 26318 bases
Position: chrKI519899.1:596244-622561
Accession: 103151704
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000005723	RNA_pol_Rpb1_5	PF04998.17	5.2e-100	1	1
ENSPFOP00000022828	RNA_pol_Rpb1_5	PF04998.17	8.5e-100	1	1
ENSPFOP00000005723	RNA_pol_Rpb1_4	PF05000.17	2.2e-21	1	1
ENSPFOP00000022828	RNA_pol_Rpb1_4	PF05000.17	2.9e-21	1	1
ENSPFOP00000005723	RNA_pol_Rpb1_2	PF00623.20	2.7e-68	1	1
ENSPFOP00000022828	RNA_pol_Rpb1_2	PF00623.20	3.2e-68	1	1
ENSPFOP00000005723	RNA_pol_Rpb1_3	PF04983.18	2.6e-36	1	1
ENSPFOP00000022828	RNA_pol_Rpb1_3	PF04983.18	1.5e-35	1	1
ENSPFOP00000022828	RNA_pol_Rpb1_1	PF04997.12	6e-24	1	1
ENSPFOP00000005723	RNA_pol_Rpb1_1	PF04997.12	1.6e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000005732	-	5938	XM_007571885	ENSPFOP00000005723	1693 (aa)	XP_007571947	A0A087XIX0
ENSPFOT00000027220	-	5965	-	ENSPFOP00000022828	1702 (aa)	-	A0A096LUI7

Gene Model

Click here to download ENSPFOG00000005025's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000005025's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000005025	polr1a	69	34.286	ENSPFOG00000007890	polr2a	59	34.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000005025	polr1a	100	65.643	ENSG00000068654	POLR1A	100	65.701	Homo_sapiens
ENSPFOG00000005025	polr1a	69	84.354	ENSAPOG00000017945	polr1a	99	84.380	Acanthochromis_polyacanthus
ENSPFOG00000005025	polr1a	100	64.771	ENSAMEG00000005807	POLR1A	100	68.163	Ailuropoda_melanoleuca
ENSPFOG00000005025	polr1a	100	78.066	ENSACIG00000022147	polr1a	100	77.673	Amphilophus_citrinellus
ENSPFOG00000005025	polr1a	100	83.001	ENSAOCG00000017336	polr1a	100	83.511	Amphiprion_ocellaris
ENSPFOG00000005025	polr1a	100	82.943	ENSAPEG00000016105	polr1a	100	82.933	Amphiprion_percula
ENSPFOG00000005025	polr1a	100	82.951	ENSATEG00000016773	polr1a	100	83.118	Anabas_testudineus
ENSPFOG00000005025	polr1a	86	66.577	ENSAPLG00000013871	POLR1A	99	66.893	Anas_platyrhynchos
ENSPFOG00000005025	polr1a	99	64.555	ENSACAG00000012141	POLR1A	99	64.207	Anolis_carolinensis
ENSPFOG00000005025	polr1a	100	65.026	ENSANAG00000033927	POLR1A	100	65.104	Aotus_nancymaae
ENSPFOG00000005025	polr1a	100	76.824	ENSACLG00000020541	polr1a	100	76.106	Astatotilapia_calliptera
ENSPFOG00000005025	polr1a	100	64.145	ENSBTAG00000006481	POLR1A	100	64.542	Bos_taurus
ENSPFOG00000005025	polr1a	99	38.876	WBGene00012999	rpoa-1	98	38.873	Caenorhabditis_elegans
ENSPFOG00000005025	polr1a	100	65.006	ENSCJAG00000019547	POLR1A	100	65.142	Callithrix_jacchus
ENSPFOG00000005025	polr1a	100	64.481	ENSCAFG00000007613	POLR1A	100	64.658	Canis_familiaris
ENSPFOG00000005025	polr1a	100	64.412	ENSCAFG00020014752	POLR1A	100	64.471	Canis_lupus_dingo
ENSPFOG00000005025	polr1a	100	64.477	ENSCHIG00000018204	POLR1A	100	64.165	Capra_hircus
ENSPFOG00000005025	polr1a	100	65.177	ENSTSYG00000002761	POLR1A	100	65.119	Carlito_syrichta
ENSPFOG00000005025	polr1a	97	61.788	ENSCAPG00000010132	POLR1A	99	61.968	Cavia_aperea
ENSPFOG00000005025	polr1a	100	64.713	ENSCPOG00000012350	POLR1A	100	65.006	Cavia_porcellus
ENSPFOG00000005025	polr1a	100	65.258	ENSCCAG00000019839	POLR1A	100	65.394	Cebus_capucinus
ENSPFOG00000005025	polr1a	100	65.585	ENSCATG00000029786	POLR1A	100	65.643	Cercocebus_atys
ENSPFOG00000005025	polr1a	100	64.290	ENSCLAG00000005187	POLR1A	100	64.290	Chinchilla_lanigera
ENSPFOG00000005025	polr1a	100	65.527	ENSCSAG00000016251	POLR1A	100	65.585	Chlorocebus_sabaeus
ENSPFOG00000005025	polr1a	99	66.028	ENSCPBG00000001115	POLR1A	99	65.625	Chrysemys_picta_bellii
ENSPFOG00000005025	polr1a	99	47.690	ENSCSAVG00000007184	-	99	47.690	Ciona_savignyi
ENSPFOG00000005025	polr1a	100	62.884	ENSCANG00000031785	POLR1A	100	62.652	Colobus_angolensis_palliatus
ENSPFOG00000005025	polr1a	100	59.676	ENSCGRG00001006651	Polr1a	100	60.369	Cricetulus_griseus_chok1gshd
ENSPFOG00000005025	polr1a	60	63.557	ENSCGRG00000010834	Polr1a	100	62.656	Cricetulus_griseus_crigri
ENSPFOG00000005025	polr1a	100	75.528	ENSCSEG00000020190	polr1a	100	75.176	Cynoglossus_semilaevis
ENSPFOG00000005025	polr1a	100	84.760	ENSCVAG00000020941	polr1a	100	84.818	Cyprinodon_variegatus
ENSPFOG00000005025	polr1a	100	71.904	ENSDARG00000098375	polr1a	100	71.454	Danio_rerio
ENSPFOG00000005025	polr1a	100	61.739	ENSDNOG00000010829	POLR1A	100	61.601	Dasypus_novemcinctus
ENSPFOG00000005025	polr1a	100	63.793	ENSDORG00000008298	Polr1a	100	64.501	Dipodomys_ordii
ENSPFOG00000005025	polr1a	79	44.113	FBgn0019938	RpI1	99	42.849	Drosophila_melanogaster
ENSPFOG00000005025	polr1a	72	87.500	ENSETEG00000000412	-	71	87.500	Echinops_telfairi
ENSPFOG00000005025	polr1a	89	48.491	ENSEBUG00000005667	-	99	47.468	Eptatretus_burgeri
ENSPFOG00000005025	polr1a	100	64.039	ENSEASG00005001625	POLR1A	100	64.777	Equus_asinus_asinus
ENSPFOG00000005025	polr1a	95	69.326	ENSECAG00000010092	POLR1A	99	69.326	Equus_caballus
ENSPFOG00000005025	polr1a	95	69.326	ENSECAG00000036306	-	99	69.326	Equus_caballus
ENSPFOG00000005025	polr1a	95	69.326	ENSECAG00000030510	-	99	69.326	Equus_caballus
ENSPFOG00000005025	polr1a	84	76.671	ENSEEUG00000000676	POLR1A	84	76.881	Erinaceus_europaeus
ENSPFOG00000005025	polr1a	100	72.319	ENSELUG00000012769	polr1a	99	72.727	Esox_lucius
ENSPFOG00000005025	polr1a	100	64.187	ENSFCAG00000008966	POLR1A	100	64.870	Felis_catus
ENSPFOG00000005025	polr1a	99	65.064	ENSFALG00000010082	POLR1A	99	64.419	Ficedula_albicollis
ENSPFOG00000005025	polr1a	100	63.805	ENSFDAG00000013726	POLR1A	100	64.282	Fukomys_damarensis
ENSPFOG00000005025	polr1a	100	81.850	ENSFHEG00000005996	polr1a	100	81.743	Fundulus_heteroclitus
ENSPFOG00000005025	polr1a	100	67.591	ENSGMOG00000002230	polr1a	100	67.710	Gadus_morhua
ENSPFOG00000005025	polr1a	89	63.407	ENSGALG00000038160	-	98	63.212	Gallus_gallus
ENSPFOG00000005025	polr1a	100	91.091	ENSGAFG00000015266	polr1a	100	90.737	Gambusia_affinis
ENSPFOG00000005025	polr1a	100	76.572	ENSGACG00000018791	polr1a	100	76.301	Gasterosteus_aculeatus
ENSPFOG00000005025	polr1a	89	67.257	ENSGAGG00000004984	-	95	71.009	Gopherus_agassizii
ENSPFOG00000005025	polr1a	100	65.585	ENSGGOG00000001788	POLR1A	100	65.701	Gorilla_gorilla
ENSPFOG00000005025	polr1a	90	77.930	ENSHBUG00000020021	polr1a	96	85.022	Haplochromis_burtoni
ENSPFOG00000005025	polr1a	100	64.709	ENSHGLG00000006334	POLR1A	100	64.535	Heterocephalus_glaber_female
ENSPFOG00000005025	polr1a	100	64.522	ENSHGLG00100006614	POLR1A	100	64.348	Heterocephalus_glaber_male
ENSPFOG00000005025	polr1a	100	74.499	ENSHCOG00000003345	polr1a	100	74.205	Hippocampus_comes
ENSPFOG00000005025	polr1a	100	70.245	ENSIPUG00000013174	polr1a	100	70.221	Ictalurus_punctatus
ENSPFOG00000005025	polr1a	100	64.257	ENSSTOG00000012580	POLR1A	100	64.692	Ictidomys_tridecemlineatus
ENSPFOG00000005025	polr1a	100	64.559	ENSJJAG00000013113	Polr1a	100	64.381	Jaculus_jaculus
ENSPFOG00000005025	polr1a	100	84.049	ENSKMAG00000007399	polr1a	100	83.706	Kryptolebias_marmoratus
ENSPFOG00000005025	polr1a	94	82.575	ENSLBEG00000015401	polr1a	99	82.219	Labrus_bergylta
ENSPFOG00000005025	polr1a	54	68.534	ENSLACG00000003218	polr1a	100	69.348	Latimeria_chalumnae
ENSPFOG00000005025	polr1a	100	69.686	ENSLOCG00000010881	polr1a	100	68.960	Lepisosteus_oculatus
ENSPFOG00000005025	polr1a	100	64.716	ENSLAFG00000014948	POLR1A	100	64.658	Loxodonta_africana
ENSPFOG00000005025	polr1a	100	65.122	ENSMFAG00000046097	POLR1A	100	65.585	Macaca_fascicularis
ENSPFOG00000005025	polr1a	100	65.064	ENSMMUG00000015815	POLR1A	100	65.527	Macaca_mulatta
ENSPFOG00000005025	polr1a	100	65.064	ENSMNEG00000043313	POLR1A	100	65.527	Macaca_nemestrina
ENSPFOG00000005025	polr1a	100	65.104	ENSMLEG00000042428	POLR1A	100	65.162	Mandrillus_leucophaeus
ENSPFOG00000005025	polr1a	100	81.909	ENSMAMG00000016565	polr1a	100	81.438	Mastacembelus_armatus
ENSPFOG00000005025	polr1a	100	82.529	ENSMZEG00005004915	polr1a	100	81.888	Maylandia_zebra
ENSPFOG00000005025	polr1a	99	62.117	ENSMGAG00000013111	POLR1A	99	61.921	Meleagris_gallopavo
ENSPFOG00000005025	polr1a	91	64.661	ENSMAUG00000008497	Polr1a	99	64.598	Mesocricetus_auratus
ENSPFOG00000005025	polr1a	100	64.195	ENSMICG00000000757	POLR1A	100	64.910	Microcebus_murinus
ENSPFOG00000005025	polr1a	100	65.081	ENSMOCG00000000122	Polr1a	100	64.907	Microtus_ochrogaster
ENSPFOG00000005025	polr1a	100	77.673	ENSMMOG00000010216	polr1a	100	77.732	Mola_mola
ENSPFOG00000005025	polr1a	100	61.276	ENSMODG00000009335	POLR1A	100	61.105	Monodelphis_domestica
ENSPFOG00000005025	polr1a	100	80.762	ENSMALG00000013363	polr1a	100	80.787	Monopterus_albus
ENSPFOG00000005025	polr1a	100	64.037	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.037	Mus_caroli
ENSPFOG00000005025	polr1a	100	64.290	ENSMUSG00000049553	Polr1a	100	64.269	Mus_musculus
ENSPFOG00000005025	polr1a	100	64.037	MGP_PahariEiJ_G0022230	Polr1a	100	63.979	Mus_pahari
ENSPFOG00000005025	polr1a	100	63.056	MGP_SPRETEiJ_G0029499	Polr1a	100	63.512	Mus_spretus
ENSPFOG00000005025	polr1a	100	64.907	ENSMPUG00000009135	POLR1A	100	64.907	Mustela_putorius_furo
ENSPFOG00000005025	polr1a	100	64.642	ENSMLUG00000015723	POLR1A	100	65.283	Myotis_lucifugus
ENSPFOG00000005025	polr1a	100	64.812	ENSNGAG00000017907	Polr1a	100	64.754	Nannospalax_galili
ENSPFOG00000005025	polr1a	100	81.968	ENSNBRG00000000519	polr1a	100	81.770	Neolamprologus_brichardi
ENSPFOG00000005025	polr1a	100	63.668	ENSNLEG00000002264	POLR1A	100	63.552	Nomascus_leucogenys
ENSPFOG00000005025	polr1a	75	81.890	ENSMEUG00000011665	-	75	81.890	Notamacropus_eugenii
ENSPFOG00000005025	polr1a	99	59.506	ENSOPRG00000008269	POLR1A	100	59.329	Ochotona_princeps
ENSPFOG00000005025	polr1a	100	64.675	ENSODEG00000003542	POLR1A	100	64.631	Octodon_degus
ENSPFOG00000005025	polr1a	100	81.871	ENSONIG00000015895	polr1a	100	81.477	Oreochromis_niloticus
ENSPFOG00000005025	polr1a	100	64.808	ENSOCUG00000010138	POLR1A	100	64.808	Oryctolagus_cuniculus
ENSPFOG00000005025	polr1a	100	80.529	ENSORLG00000008753	polr1a	99	80.529	Oryzias_latipes
ENSPFOG00000005025	polr1a	100	77.045	ENSORLG00020020726	polr1a	99	76.941	Oryzias_latipes_hni
ENSPFOG00000005025	polr1a	95	86.170	ENSORLG00015016071	polr1a	98	86.170	Oryzias_latipes_hsok
ENSPFOG00000005025	polr1a	100	64.228	ENSOGAG00000004031	POLR1A	100	64.484	Otolemur_garnettii
ENSPFOG00000005025	polr1a	100	64.120	ENSOARG00000020601	POLR1A	100	64.583	Ovis_aries
ENSPFOG00000005025	polr1a	100	65.411	ENSPPAG00000042450	POLR1A	100	65.469	Pan_paniscus
ENSPFOG00000005025	polr1a	100	64.129	ENSPPRG00000006702	POLR1A	100	64.928	Panthera_pardus
ENSPFOG00000005025	polr1a	100	63.736	ENSPTIG00000018783	POLR1A	100	64.529	Panthera_tigris_altaica
ENSPFOG00000005025	polr1a	100	64.890	ENSPTRG00000012147	POLR1A	100	65.411	Pan_troglodytes
ENSPFOG00000005025	polr1a	100	65.353	ENSPANG00000025908	POLR1A	100	65.411	Papio_anubis
ENSPFOG00000005025	polr1a	100	70.281	ENSPKIG00000005468	polr1a	98	73.611	Paramormyrops_kingsleyae
ENSPFOG00000005025	polr1a	63	63.960	ENSPSIG00000009321	-	99	64.495	Pelodiscus_sinensis
ENSPFOG00000005025	polr1a	55	78.982	ENSPMGG00000009718	polr1a	95	78.873	Periophthalmus_magnuspinnatus
ENSPFOG00000005025	polr1a	100	64.617	ENSPEMG00000022224	Polr1a	100	64.443	Peromyscus_maniculatus_bairdii
ENSPFOG00000005025	polr1a	95	62.812	ENSPCIG00000004222	POLR1A	99	63.116	Phascolarctos_cinereus
ENSPFOG00000005025	polr1a	100	99.173	ENSPLAG00000021389	polr1a	100	99.173	Poecilia_latipinna
ENSPFOG00000005025	polr1a	100	95.532	ENSPMEG00000006463	polr1a	100	95.532	Poecilia_mexicana
ENSPFOG00000005025	polr1a	100	97.404	ENSPREG00000002389	polr1a	100	97.404	Poecilia_reticulata
ENSPFOG00000005025	polr1a	100	65.295	ENSPPYG00000012217	POLR1A	100	65.353	Pongo_abelii
ENSPFOG00000005025	polr1a	91	65.070	ENSPCAG00000011582	POLR1A	91	65.070	Procavia_capensis
ENSPFOG00000005025	polr1a	100	64.126	ENSPCOG00000026987	POLR1A	100	64.794	Propithecus_coquereli
ENSPFOG00000005025	polr1a	95	63.425	ENSPVAG00000012674	POLR1A	95	64.333	Pteropus_vampyrus
ENSPFOG00000005025	polr1a	100	82.471	ENSPNYG00000000026	polr1a	100	81.829	Pundamilia_nyererei
ENSPFOG00000005025	polr1a	100	71.120	ENSPNAG00000019223	polr1a	100	71.062	Pygocentrus_nattereri
ENSPFOG00000005025	polr1a	100	64.153	ENSRNOG00000009545	Polr1a	100	64.153	Rattus_norvegicus
ENSPFOG00000005025	polr1a	100	65.122	ENSRBIG00000028335	POLR1A	100	65.527	Rhinopithecus_bieti
ENSPFOG00000005025	polr1a	100	65.122	ENSRROG00000031473	POLR1A	100	65.527	Rhinopithecus_roxellana
ENSPFOG00000005025	polr1a	99	36.297	YOR341W	RPA190	99	35.775	Saccharomyces_cerevisiae
ENSPFOG00000005025	polr1a	100	65.026	ENSSBOG00000030262	POLR1A	100	65.162	Saimiri_boliviensis_boliviensis
ENSPFOG00000005025	polr1a	100	59.505	ENSSHAG00000014739	POLR1A	100	59.505	Sarcophilus_harrisii
ENSPFOG00000005025	polr1a	100	68.837	ENSSFOG00015019716	polr1a	100	69.271	Scleropages_formosus
ENSPFOG00000005025	polr1a	100	81.309	ENSSMAG00000014342	polr1a	100	81.191	Scophthalmus_maximus
ENSPFOG00000005025	polr1a	100	83.196	ENSSDUG00000014631	polr1a	100	82.902	Seriola_dumerili
ENSPFOG00000005025	polr1a	100	79.567	ENSSLDG00000024095	polr1a	100	79.274	Seriola_lalandi_dorsalis
ENSPFOG00000005025	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSPFOG00000005025	polr1a	95	70.769	ENSSPUG00000004215	POLR1A	98	70.769	Sphenodon_punctatus
ENSPFOG00000005025	polr1a	66	84.869	ENSSPAG00000016341	polr1a	96	84.869	Stegastes_partitus
ENSPFOG00000005025	polr1a	84	65.532	ENSSSCG00000008226	POLR1A	99	65.806	Sus_scrofa
ENSPFOG00000005025	polr1a	99	64.609	ENSTGUG00000010704	POLR1A	100	64.315	Taeniopygia_guttata
ENSPFOG00000005025	polr1a	100	76.457	ENSTRUG00000002210	polr1a	99	76.751	Takifugu_rubripes
ENSPFOG00000005025	polr1a	100	70.616	ENSTNIG00000010116	polr1a	100	70.534	Tetraodon_nigroviridis
ENSPFOG00000005025	polr1a	73	80.531	ENSTBEG00000008646	POLR1A	74	80.531	Tupaia_belangeri
ENSPFOG00000005025	polr1a	100	62.391	ENSTTRG00000008597	POLR1A	100	62.275	Tursiops_truncatus
ENSPFOG00000005025	polr1a	69	65.622	ENSUAMG00000012158	-	94	65.625	Ursus_americanus
ENSPFOG00000005025	polr1a	100	64.399	ENSUMAG00000006700	POLR1A	97	67.732	Ursus_maritimus
ENSPFOG00000005025	polr1a	100	64.539	ENSVVUG00000001245	POLR1A	100	64.713	Vulpes_vulpes
ENSPFOG00000005025	polr1a	100	62.197	ENSXETG00000001952	polr1a	99	63.452	Xenopus_tropicalis
ENSPFOG00000005025	polr1a	100	93.761	ENSXMAG00000004032	polr1a	100	93.879	Xiphophorus_maculatus