EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000005521 (Gene tree)
Gene ID: 107833109
Gene Symbol: si:ch1073-385f13.3
Alias: -
Full Name: si:ch1073-385f13.3
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 5346 bases
Position: chrKI519940.1:471591-476936
Accession: ZDB-GENE-131127-357
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000005389	RNase_T	PF00929.24	8.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000005398	-	588	-	ENSPFOP00000005389	196 (aa)	-	A0A087XHY6

Gene Model

Click here to download ENSPFOG00000005521's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000005521's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000005521	si:ch1073-385f13.3	95	80.108	ENSPFOG00000021742	-	98	80.108

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000005521	si:ch1073-385f13.3	88	38.286	ENSAOCG00000011593	si:ch1073-296i8.2	62	38.286	Amphiprion_ocellaris
ENSPFOG00000005521	si:ch1073-385f13.3	88	38.286	ENSAPEG00000012492	si:ch1073-296i8.2	62	38.286	Amphiprion_percula
ENSPFOG00000005521	si:ch1073-385f13.3	97	36.458	ENSATEG00000021547	si:ch1073-296i8.2	75	36.458	Anabas_testudineus
ENSPFOG00000005521	si:ch1073-385f13.3	99	59.487	ENSATEG00000021542	si:ch1073-385f13.3	100	59.487	Anabas_testudineus
ENSPFOG00000005521	si:ch1073-385f13.3	90	61.017	ENSACLG00000023991	-	54	61.017	Astatotilapia_calliptera
ENSPFOG00000005521	si:ch1073-385f13.3	96	65.426	ENSCVAG00000001533	-	96	65.426	Cyprinodon_variegatus
ENSPFOG00000005521	si:ch1073-385f13.3	90	43.889	ENSDARG00000092584	si:ch1073-385f13.3	73	43.889	Danio_rerio
ENSPFOG00000005521	si:ch1073-385f13.3	95	43.085	ENSDARG00000093773	si:ch1073-296i8.2	79	43.085	Danio_rerio
ENSPFOG00000005521	si:ch1073-385f13.3	95	39.153	ENSFHEG00000018188	si:ch1073-296i8.2	76	39.153	Fundulus_heteroclitus
ENSPFOG00000005521	si:ch1073-385f13.3	99	61.856	ENSFHEG00000018181	-	98	61.856	Fundulus_heteroclitus
ENSPFOG00000005521	si:ch1073-385f13.3	89	44.318	ENSGMOG00000019335	si:ch1073-296i8.2	98	44.318	Gadus_morhua
ENSPFOG00000005521	si:ch1073-385f13.3	93	54.645	ENSGMOG00000019565	-	97	54.645	Gadus_morhua
ENSPFOG00000005521	si:ch1073-385f13.3	89	41.477	ENSGACG00000007185	si:ch1073-296i8.2	97	41.477	Gasterosteus_aculeatus
ENSPFOG00000005521	si:ch1073-385f13.3	98	64.249	ENSHBUG00000007541	si:ch1073-385f13.3	98	64.249	Haplochromis_burtoni
ENSPFOG00000005521	si:ch1073-385f13.3	96	38.947	ENSHCOG00000008574	si:ch1073-296i8.2	79	38.947	Hippocampus_comes
ENSPFOG00000005521	si:ch1073-385f13.3	96	40.314	ENSKMAG00000015660	si:ch1073-296i8.2	85	40.314	Kryptolebias_marmoratus
ENSPFOG00000005521	si:ch1073-385f13.3	97	62.105	ENSKMAG00000015669	-	96	62.105	Kryptolebias_marmoratus
ENSPFOG00000005521	si:ch1073-385f13.3	90	43.575	ENSLBEG00000019623	si:ch1073-296i8.2	70	43.575	Labrus_bergylta
ENSPFOG00000005521	si:ch1073-385f13.3	91	53.591	ENSLOCG00000014933	-	90	53.591	Lepisosteus_oculatus
ENSPFOG00000005521	si:ch1073-385f13.3	93	58.242	ENSMAMG00000023075	si:ch1073-385f13.3	94	58.242	Mastacembelus_armatus
ENSPFOG00000005521	si:ch1073-385f13.3	72	39.161	ENSMMOG00000018979	si:ch1073-296i8.2	67	39.161	Mola_mola
ENSPFOG00000005521	si:ch1073-385f13.3	95	60.847	ENSMALG00000015952	si:ch1073-385f13.3	97	60.847	Monopterus_albus
ENSPFOG00000005521	si:ch1073-385f13.3	98	62.694	ENSONIG00000012794	si:ch1073-385f13.3	98	62.694	Oreochromis_niloticus
ENSPFOG00000005521	si:ch1073-385f13.3	99	63.402	ENSORLG00000030645	si:ch1073-385f13.3	88	63.402	Oryzias_latipes
ENSPFOG00000005521	si:ch1073-385f13.3	96	38.220	ENSORLG00000023958	si:ch1073-296i8.2	86	38.220	Oryzias_latipes
ENSPFOG00000005521	si:ch1073-385f13.3	99	61.856	ENSORLG00020021903	-	99	61.856	Oryzias_latipes_hni
ENSPFOG00000005521	si:ch1073-385f13.3	96	38.220	ENSORLG00020021912	si:ch1073-296i8.2	86	38.220	Oryzias_latipes_hni
ENSPFOG00000005521	si:ch1073-385f13.3	96	38.220	ENSORLG00015015303	si:ch1073-296i8.2	86	38.220	Oryzias_latipes_hsok
ENSPFOG00000005521	si:ch1073-385f13.3	95	48.421	ENSPKIG00000023552	-	87	48.421	Paramormyrops_kingsleyae
ENSPFOG00000005521	si:ch1073-385f13.3	98	78.125	ENSPMEG00000013087	si:ch1073-385f13.3	100	78.125	Poecilia_mexicana
ENSPFOG00000005521	si:ch1073-385f13.3	99	98.462	ENSPMEG00000013096	si:ch1073-385f13.3	99	98.462	Poecilia_mexicana
ENSPFOG00000005521	si:ch1073-385f13.3	94	71.226	ENSPREG00000013537	-	81	71.226	Poecilia_reticulata
ENSPFOG00000005521	si:ch1073-385f13.3	89	47.701	ENSPNAG00000018956	si:ch1073-385f13.3	92	47.701	Pygocentrus_nattereri
ENSPFOG00000005521	si:ch1073-385f13.3	95	39.683	ENSSMAG00000004874	si:ch1073-296i8.2	72	39.683	Scophthalmus_maximus
ENSPFOG00000005521	si:ch1073-385f13.3	97	61.257	ENSSLDG00000002379	si:ch1073-385f13.3	97	61.257	Seriola_lalandi_dorsalis
ENSPFOG00000005521	si:ch1073-385f13.3	95	39.153	ENSSPAG00000012797	si:ch1073-296i8.2	96	39.153	Stegastes_partitus
ENSPFOG00000005521	si:ch1073-385f13.3	92	39.344	ENSTNIG00000010399	si:ch1073-296i8.2	79	39.344	Tetraodon_nigroviridis
ENSPFOG00000005521	si:ch1073-385f13.3	99	83.590	ENSXMAG00000021869	si:ch1073-385f13.3	99	83.590	Xiphophorus_maculatus