EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPFOG00000005917 (Gene tree)
Gene ID
103151587
Gene Symbol
pabpc1b
Alias
-
Full Name
poly A binding protein%2C cytoplasmic 1 b
Gene Type
protein_coding
Species
Poecilia_formosa
Status
putative
Strand
Minus strand
Length
8447 bases
Position
chrKI519896.1:709026-717472
Accession
ZDB-GENE-050308-1
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPFOP00000005886PABPPF00658.185e-3211
ENSPFOP00000005886RRM_5PF13893.61.1e-0812
ENSPFOP00000005886RRM_5PF13893.61.1e-0822
ENSPFOP00000005886RRM_1PF00076.221.6e-8714
ENSPFOP00000005886RRM_1PF00076.221.6e-8724
ENSPFOP00000005886RRM_1PF00076.221.6e-8734
ENSPFOP00000005886RRM_1PF00076.221.6e-8744
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPFOT00000005895-3148-ENSPFOP00000005886633 (aa)-A0A087XJD3
Gene Model
Click here to download ENSPFOG00000005917's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000005917's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPFOG00000005917pabpc1b5930.464ENSPFOG00000003436ELAVL27830.464
ENSPFOG00000005917pabpc1b9870.551ENSPFOG00000013241pabpc1l9970.523
ENSPFOG00000005917pabpc1b10088.462ENSPFOG00000010815pabpc1a10088.290
ENSPFOG00000005917pabpc1b5637.333ENSPFOG00000015300rbm195837.333
ENSPFOG00000005917pabpc1b5931.579ENSPFOG00000004811elavl410030.645
ENSPFOG00000005917pabpc1b9976.312ENSPFOG00000002682pabpc49876.153
ENSPFOG00000005917pabpc1b5830.208ENSPFOG00000004539-7130.208
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPFOG00000005917pabpc1b5879.082ENSG00000186288PABPC1L2A9879.082Homo_sapiens
ENSPFOG00000005917pabpc1b5879.082ENSG00000184388PABPC1L2B9879.082Homo_sapiens
ENSPFOG00000005917pabpc1b10090.125ENSAPOG00000015105pabpc1a10089.812Acanthochromis_polyacanthus
ENSPFOG00000005917pabpc1b10095.426ENSAPOG00000017776pabpc1b10095.426Acanthochromis_polyacanthus
ENSPFOG00000005917pabpc1b5879.082ENSAMEG00000019441-9879.082Ailuropoda_melanoleuca
ENSPFOG00000005917pabpc1b10089.812ENSACIG00000004685pabpc1a10089.655Amphilophus_citrinellus
ENSPFOG00000005917pabpc1b10089.590ENSACIG00000018366pabpc1b10087.037Amphilophus_citrinellus
ENSPFOG00000005917pabpc1b10095.268ENSAOCG00000019839pabpc1b10095.268Amphiprion_ocellaris
ENSPFOG00000005917pabpc1b10089.812ENSAOCG00000011656pabpc1a10088.715Amphiprion_ocellaris
ENSPFOG00000005917pabpc1b10095.268ENSAPEG00000010435pabpc1b10095.268Amphiprion_percula
ENSPFOG00000005917pabpc1b10089.812ENSAPEG00000006963pabpc1a10088.715Amphiprion_percula
ENSPFOG00000005917pabpc1b10089.812ENSATEG00000024852pabpc1a10089.655Anabas_testudineus
ENSPFOG00000005917pabpc1b10094.340ENSATEG00000012917pabpc1b10094.340Anabas_testudineus
ENSPFOG00000005917pabpc1b5879.082ENSANAG00000019431-9879.082Aotus_nancymaae
ENSPFOG00000005917pabpc1b5879.082ENSANAG00000019429-9879.082Aotus_nancymaae
ENSPFOG00000005917pabpc1b9991.136ENSACLG00000009399pabpc1a10094.231Astatotilapia_calliptera
ENSPFOG00000005917pabpc1b10093.691ENSACLG00000014335pabpc1b10093.691Astatotilapia_calliptera
ENSPFOG00000005917pabpc1b10093.228ENSAMXG00000008599pabpc1b10092.756Astyanax_mexicanus
ENSPFOG00000005917pabpc1b5978.049ENSBTAG00000050902-9878.049Bos_taurus
ENSPFOG00000005917pabpc1b5976.077ENSBTAG00000052491-9876.077Bos_taurus
ENSPFOG00000005917pabpc1b5879.082ENSCJAG00000041326-9879.082Callithrix_jacchus
ENSPFOG00000005917pabpc1b5978.049ENSCAFG00020002052-9878.049Canis_lupus_dingo
ENSPFOG00000005917pabpc1b5879.082ENSCHIG00000006283-9879.082Capra_hircus
ENSPFOG00000005917pabpc1b5879.082ENSCHIG00000011138-9879.082Capra_hircus
ENSPFOG00000005917pabpc1b5879.082ENSTSYG00000001775-9879.082Carlito_syrichta
ENSPFOG00000005917pabpc1b5879.082ENSCPOG00000009525-9879.082Cavia_porcellus
ENSPFOG00000005917pabpc1b5879.082ENSCCAG00000031524-9879.082Cebus_capucinus
ENSPFOG00000005917pabpc1b5879.082ENSCATG00000042826-9879.082Cercocebus_atys
ENSPFOG00000005917pabpc1b5879.082ENSCATG00000043125-9879.082Cercocebus_atys
ENSPFOG00000005917pabpc1b5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSPFOG00000005917pabpc1b5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSPFOG00000005917pabpc1b5879.082ENSCSAG00000000102-9879.082Chlorocebus_sabaeus
ENSPFOG00000005917pabpc1b5879.558ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSPFOG00000005917pabpc1b10090.694ENSCSEG00000015241-10090.694Cynoglossus_semilaevis
ENSPFOG00000005917pabpc1b9989.590ENSCSEG00000013324pabpc1a10089.432Cynoglossus_semilaevis
ENSPFOG00000005917pabpc1b10089.812ENSCVAG00000021872pabpc1a10088.715Cyprinodon_variegatus
ENSPFOG00000005917pabpc1b10095.906ENSCVAG00000005489pabpc1b10095.906Cyprinodon_variegatus
ENSPFOG00000005917pabpc1b10092.598ENSDARG00000021140pabpc1b9998.473Danio_rerio
ENSPFOG00000005917pabpc1b10090.094ENSDARG00000017219pabpc1a10089.465Danio_rerio
ENSPFOG00000005917pabpc1b5879.894ENSDNOG00000030926-9877.551Dasypus_novemcinctus
ENSPFOG00000005917pabpc1b5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSPFOG00000005917pabpc1b5977.670ENSEASG00005010399-9877.670Equus_asinus_asinus
ENSPFOG00000005917pabpc1b5977.670ENSECAG00000002620-9877.670Equus_caballus
ENSPFOG00000005917pabpc1b5974.490ENSEEUG00000008203-9874.490Erinaceus_europaeus
ENSPFOG00000005917pabpc1b9990.566ENSELUG00000003614pabpc1a10089.780Esox_lucius
ENSPFOG00000005917pabpc1b5957.759ENSELUG00000005389-9757.759Esox_lucius
ENSPFOG00000005917pabpc1b10091.366ENSELUG00000015062-10091.366Esox_lucius
ENSPFOG00000005917pabpc1b5879.082ENSFCAG00000039701-9879.082Felis_catus
ENSPFOG00000005917pabpc1b5879.082ENSFDAG00000005484-9879.082Fukomys_damarensis
ENSPFOG00000005917pabpc1b10097.003ENSFHEG00000008186pabpc1b10097.003Fundulus_heteroclitus
ENSPFOG00000005917pabpc1b10089.655ENSFHEG00000018979pabpc1a10089.498Fundulus_heteroclitus
ENSPFOG00000005917pabpc1b9987.869ENSGMOG00000013448pabpc1a9987.869Gadus_morhua
ENSPFOG00000005917pabpc1b10083.178ENSGMOG00000002448-10082.555Gadus_morhua
ENSPFOG00000005917pabpc1b10089.342ENSGAFG00000019750pabpc1a10088.401Gambusia_affinis
ENSPFOG00000005917pabpc1b10099.054ENSGAFG00000010193pabpc1b10099.054Gambusia_affinis
ENSPFOG00000005917pabpc1b10089.969ENSGACG00000003572pabpc1a10089.812Gasterosteus_aculeatus
ENSPFOG00000005917pabpc1b10091.719ENSGACG00000003771pabpc1b10091.719Gasterosteus_aculeatus
ENSPFOG00000005917pabpc1b5879.082ENSGGOG00000043933-9879.082Gorilla_gorilla
ENSPFOG00000005917pabpc1b5879.082ENSGGOG00000038606-9879.082Gorilla_gorilla
ENSPFOG00000005917pabpc1b9991.136ENSHBUG00000020487pabpc1a10094.231Haplochromis_burtoni
ENSPFOG00000005917pabpc1b10093.691ENSHBUG00000002075pabpc1b10093.691Haplochromis_burtoni
ENSPFOG00000005917pabpc1b5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSPFOG00000005917pabpc1b5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSPFOG00000005917pabpc1b5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSPFOG00000005917pabpc1b9876.368ENSHCOG00000003175pabpc1b9981.915Hippocampus_comes
ENSPFOG00000005917pabpc1b10089.655ENSHCOG00000013502pabpc1a10089.498Hippocampus_comes
ENSPFOG00000005917pabpc1b10086.457ENSIPUG00000010791-10086.299Ictalurus_punctatus
ENSPFOG00000005917pabpc1b7355.224ENSIPUG00000018724-7655.224Ictalurus_punctatus
ENSPFOG00000005917pabpc1b10088.504ENSIPUG00000008848pabpc1a10088.346Ictalurus_punctatus
ENSPFOG00000005917pabpc1b7455.532ENSIPUG00000021244-6555.532Ictalurus_punctatus
ENSPFOG00000005917pabpc1b5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSPFOG00000005917pabpc1b5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSPFOG00000005917pabpc1b5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSPFOG00000005917pabpc1b10094.006ENSKMAG00000008049pabpc1b10093.533Kryptolebias_marmoratus
ENSPFOG00000005917pabpc1b10089.812ENSKMAG00000000605pabpc1a10089.655Kryptolebias_marmoratus
ENSPFOG00000005917pabpc1b10089.498ENSLBEG00000024002-10089.342Labrus_bergylta
ENSPFOG00000005917pabpc1b10093.849ENSLBEG00000026845pabpc1b10093.849Labrus_bergylta
ENSPFOG00000005917pabpc1b5878.462ENSLAFG00000023096-9878.462Loxodonta_africana
ENSPFOG00000005917pabpc1b5878.680ENSMFAG00000028878-9878.680Macaca_fascicularis
ENSPFOG00000005917pabpc1b5879.082ENSMMUG00000039929-9879.082Macaca_mulatta
ENSPFOG00000005917pabpc1b5879.082ENSMMUG00000009740-9879.082Macaca_mulatta
ENSPFOG00000005917pabpc1b5879.082ENSMMUG00000037681-9879.082Macaca_mulatta
ENSPFOG00000005917pabpc1b5879.082ENSMNEG00000037732-9879.082Macaca_nemestrina
ENSPFOG00000005917pabpc1b5879.082ENSMLEG00000027495-9879.082Mandrillus_leucophaeus
ENSPFOG00000005917pabpc1b10089.498ENSMAMG00000004502-10089.342Mastacembelus_armatus
ENSPFOG00000005917pabpc1b10095.268ENSMAMG00000014610pabpc1b10095.268Mastacembelus_armatus
ENSPFOG00000005917pabpc1b9991.136ENSMZEG00005025416pabpc1a10094.231Maylandia_zebra
ENSPFOG00000005917pabpc1b10093.691ENSMZEG00005026745pabpc1b10093.691Maylandia_zebra
ENSPFOG00000005917pabpc1b5879.082ENSMICG00000047642-9879.082Microcebus_murinus
ENSPFOG00000005917pabpc1b9989.773ENSMMOG00000018044pabpc1a10094.231Mola_mola
ENSPFOG00000005917pabpc1b10087.855ENSMMOG00000018009pabpc1b10087.697Mola_mola
ENSPFOG00000005917pabpc1b9873.089ENSMODG00000013156-9873.280Monodelphis_domestica
ENSPFOG00000005917pabpc1b9966.667ENSMODG00000015024-9966.137Monodelphis_domestica
ENSPFOG00000005917pabpc1b10088.871ENSMALG00000013020-10088.871Monopterus_albus
ENSPFOG00000005917pabpc1b10089.117ENSMALG00000006066pabpc1b10089.274Monopterus_albus
ENSPFOG00000005917pabpc1b5881.421ENSNGAG00000012688-9878.571Nannospalax_galili
ENSPFOG00000005917pabpc1b9991.136ENSNBRG00000003068-10094.231Neolamprologus_brichardi
ENSPFOG00000005917pabpc1b10093.691ENSNBRG00000013737pabpc1b10093.691Neolamprologus_brichardi
ENSPFOG00000005917pabpc1b5879.082ENSNLEG00000018128-9879.082Nomascus_leucogenys
ENSPFOG00000005917pabpc1b5878.571ENSODEG00000018540-9878.571Octodon_degus
ENSPFOG00000005917pabpc1b10089.655ENSONIG00000006871-10089.342Oreochromis_niloticus
ENSPFOG00000005917pabpc1b10093.375ENSONIG00000002717pabpc1b10093.375Oreochromis_niloticus
ENSPFOG00000005917pabpc1b5879.082ENSOCUG00000002565-9879.082Oryctolagus_cuniculus
ENSPFOG00000005917pabpc1b9993.349ENSORLG00000002691pabpc1a9693.349Oryzias_latipes
ENSPFOG00000005917pabpc1b10086.435ENSORLG00000003008-10085.647Oryzias_latipes
ENSPFOG00000005917pabpc1b10089.655ENSORLG00020022398pabpc1a10089.498Oryzias_latipes_hni
ENSPFOG00000005917pabpc1b10086.435ENSORLG00020022259-10085.647Oryzias_latipes_hni
ENSPFOG00000005917pabpc1b10086.751ENSORLG00015010932-10085.962Oryzias_latipes_hsok
ENSPFOG00000005917pabpc1b10089.498ENSORLG00015013633pabpc110089.342Oryzias_latipes_hsok
ENSPFOG00000005917pabpc1b9984.897ENSOMEG00000013627pabpc1b10084.897Oryzias_melastigma
ENSPFOG00000005917pabpc1b10089.969ENSOMEG00000020219pabpc1a10089.812Oryzias_melastigma
ENSPFOG00000005917pabpc1b5879.082ENSOGAG00000029513-9879.082Otolemur_garnettii
ENSPFOG00000005917pabpc1b5879.082ENSOGAG00000026047-9879.082Otolemur_garnettii
ENSPFOG00000005917pabpc1b5879.082ENSOARG00000005943-9879.082Ovis_aries
ENSPFOG00000005917pabpc1b5879.082ENSPPAG00000012920-9879.082Pan_paniscus
ENSPFOG00000005917pabpc1b5879.082ENSPPRG00000011804-9879.082Panthera_pardus
ENSPFOG00000005917pabpc1b5879.082ENSPPRG00000011809-9879.082Panthera_pardus
ENSPFOG00000005917pabpc1b5879.082ENSPTRG00000028252-9879.082Pan_troglodytes
ENSPFOG00000005917pabpc1b5879.082ENSPANG00000011549-9879.082Papio_anubis
ENSPFOG00000005917pabpc1b10093.543ENSPKIG00000005676pabpc1b10093.228Paramormyrops_kingsleyae
ENSPFOG00000005917pabpc1b7094.395ENSPMGG00000023134-9794.395Periophthalmus_magnuspinnatus
ENSPFOG00000005917pabpc1b7092.601ENSPMGG00000022487pabpc1a9292.601Periophthalmus_magnuspinnatus
ENSPFOG00000005917pabpc1b9971.383ENSPCIG00000016995-5470.880Phascolarctos_cinereus
ENSPFOG00000005917pabpc1b10089.969ENSPLAG00000004114pabpc1a10088.871Poecilia_latipinna
ENSPFOG00000005917pabpc1b10099.685ENSPLAG00000001388pabpc1b10099.685Poecilia_latipinna
ENSPFOG00000005917pabpc1b10099.685ENSPMEG00000014399pabpc1b10099.685Poecilia_mexicana
ENSPFOG00000005917pabpc1b10089.969ENSPMEG00000001334pabpc1a10088.871Poecilia_mexicana
ENSPFOG00000005917pabpc1b9990.682ENSPREG00000019595pabpc1a10094.231Poecilia_reticulata
ENSPFOG00000005917pabpc1b10099.685ENSPREG00000010911pabpc1b10099.685Poecilia_reticulata
ENSPFOG00000005917pabpc1b5879.082ENSPPYG00000020468-9879.082Pongo_abelii
ENSPFOG00000005917pabpc1b5979.082ENSPCAG00000005308-9879.082Procavia_capensis
ENSPFOG00000005917pabpc1b5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSPFOG00000005917pabpc1b5979.487ENSPVAG00000016117-9879.487Pteropus_vampyrus
ENSPFOG00000005917pabpc1b10093.691ENSPNYG00000012578pabpc1b10093.691Pundamilia_nyererei
ENSPFOG00000005917pabpc1b10089.655ENSPNYG00000005192pabpc1a10089.498Pundamilia_nyererei
ENSPFOG00000005917pabpc1b10093.228ENSPNAG00000024626pabpc1b10092.756Pygocentrus_nattereri
ENSPFOG00000005917pabpc1b10089.623ENSPNAG00000028408pabpc1a10088.994Pygocentrus_nattereri
ENSPFOG00000005917pabpc1b5879.082ENSRBIG00000027173-9879.082Rhinopithecus_bieti
ENSPFOG00000005917pabpc1b9990.780ENSRBIG00000028738-9590.780Rhinopithecus_bieti
ENSPFOG00000005917pabpc1b5879.082ENSRROG00000017404-9879.082Rhinopithecus_roxellana
ENSPFOG00000005917pabpc1b9863.666ENSSHAG00000000511-10063.344Sarcophilus_harrisii
ENSPFOG00000005917pabpc1b10092.902ENSSFOG00015002752-10092.902Scleropages_formosus
ENSPFOG00000005917pabpc1b7079.191ENSSFOG00015019668-9179.191Scleropages_formosus
ENSPFOG00000005917pabpc1b10090.709ENSSFOG00015006662pabpc1a10090.709Scleropages_formosus
ENSPFOG00000005917pabpc1b10094.164ENSSMAG00000006869pabpc1b10094.164Scophthalmus_maximus
ENSPFOG00000005917pabpc1b10089.655ENSSMAG00000010803pabpc1a10089.498Scophthalmus_maximus
ENSPFOG00000005917pabpc1b10093.218ENSSDUG00000011965pabpc1b10093.218Seriola_dumerili
ENSPFOG00000005917pabpc1b10089.655ENSSDUG00000006675pabpc1a10089.498Seriola_dumerili
ENSPFOG00000005917pabpc1b10094.836ENSSLDG00000014156pabpc1b10094.836Seriola_lalandi_dorsalis
ENSPFOG00000005917pabpc1b10089.655ENSSLDG00000011661pabpc1a10089.498Seriola_lalandi_dorsalis
ENSPFOG00000005917pabpc1b10095.741ENSSPAG00000019265pabpc1b10095.741Stegastes_partitus
ENSPFOG00000005917pabpc1b10089.969ENSSPAG00000014453-10089.812Stegastes_partitus
ENSPFOG00000005917pabpc1b5879.082ENSSSCG00000036336-9879.082Sus_scrofa
ENSPFOG00000005917pabpc1b5879.082ENSSSCG00000032167-9879.082Sus_scrofa
ENSPFOG00000005917pabpc1b10090.866ENSTRUG00000003767-10090.236Takifugu_rubripes
ENSPFOG00000005917pabpc1b10089.028ENSTRUG00000011577-10089.028Takifugu_rubripes
ENSPFOG00000005917pabpc1b10086.090ENSTNIG00000013307pabpc1a10086.090Tetraodon_nigroviridis
ENSPFOG00000005917pabpc1b10090.909ENSTNIG00000009153pabpc1b10090.439Tetraodon_nigroviridis
ENSPFOG00000005917pabpc1b5879.082ENSTTRG00000013181-9879.082Tursiops_truncatus
ENSPFOG00000005917pabpc1b5879.082ENSUAMG00000008089-9879.082Ursus_americanus
ENSPFOG00000005917pabpc1b5879.082ENSUMAG00000003364-9879.082Ursus_maritimus
ENSPFOG00000005917pabpc1b9753.809ENSUMAG00000023926-8968.232Ursus_maritimus
ENSPFOG00000005917pabpc1b5878.000ENSVVUG00000015892-9778.000Vulpes_vulpes
ENSPFOG00000005917pabpc1b9945.946ENSXETG00000015439-10045.270Xenopus_tropicalis
ENSPFOG00000005917pabpc1b10092.271ENSXCOG00000019901pabpc1b10091.956Xiphophorus_couchianus
ENSPFOG00000005917pabpc1b10086.278ENSXCOG00000017066pabpc1a10086.435Xiphophorus_couchianus
ENSPFOG00000005917pabpc1b10099.211ENSXMAG00000003753pabpc1b10099.211Xiphophorus_maculatus
ENSPFOG00000005917pabpc1b10089.812ENSXMAG00000002555pabpc1a10089.655Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us