EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000006683 (Gene tree)
Gene ID: 103147087
Gene Symbol: a1cf
Alias: -
Full Name: APOBEC1 complementation factor-like
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 7254 bases
Position: chrKI519783.1:1387123-1394376
Accession: 103147087
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000006661	DND1_DSRM	PF14709.7	4.6e-26	1	1
ENSPFOP00000006661	RRM_1	PF00076.22	1.2e-40	1	3
ENSPFOP00000006661	RRM_1	PF00076.22	1.2e-40	2	3
ENSPFOP00000006661	RRM_1	PF00076.22	1.2e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000006673	-	1966	XM_016678085	ENSPFOP00000006661	614 (aa)	XP_007565308	A0A087XLK8

Gene Model

Click here to download ENSPFOG00000006683's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000006683's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000006683	a1cf	87	52.897	ENSPFOG00000007997	rbm47	75	50.926
ENSPFOG00000006683	a1cf	100	99.674	ENSPFOG00000007437	-	100	99.674
ENSPFOG00000006683	a1cf	52	51.875	ENSPFOG00000017273	-	62	53.925
ENSPFOG00000006683	a1cf	86	49.453	ENSPFOG00000001079	rbm46	94	48.976

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000006683	a1cf	100	77.362	ENSG00000148584	A1CF	100	87.129	Homo_sapiens
ENSPFOG00000006683	a1cf	100	84.665	ENSAPOG00000008259	a1cf	100	84.039	Acanthochromis_polyacanthus
ENSPFOG00000006683	a1cf	100	76.384	ENSAMEG00000000523	A1CF	100	75.733	Ailuropoda_melanoleuca
ENSPFOG00000006683	a1cf	100	87.480	ENSACIG00000008632	a1cf	100	89.268	Amphilophus_citrinellus
ENSPFOG00000006683	a1cf	100	86.319	ENSAOCG00000023744	a1cf	97	89.459	Amphiprion_ocellaris
ENSPFOG00000006683	a1cf	100	87.459	ENSAPEG00000009537	a1cf	100	87.296	Amphiprion_percula
ENSPFOG00000006683	a1cf	100	90.554	ENSATEG00000013720	a1cf	100	90.554	Anabas_testudineus
ENSPFOG00000006683	a1cf	100	77.524	ENSAPLG00000002964	A1CF	100	76.059	Anas_platyrhynchos
ENSPFOG00000006683	a1cf	100	76.059	ENSACAG00000015269	A1CF	100	75.570	Anolis_carolinensis
ENSPFOG00000006683	a1cf	100	77.199	ENSANAG00000019974	A1CF	100	75.407	Aotus_nancymaae
ENSPFOG00000006683	a1cf	100	84.878	ENSACLG00000017428	a1cf	100	84.065	Astatotilapia_calliptera
ENSPFOG00000006683	a1cf	100	76.699	ENSAMXG00000018180	a1cf	100	75.728	Astyanax_mexicanus
ENSPFOG00000006683	a1cf	100	76.547	ENSBTAG00000021195	A1CF	100	75.407	Bos_taurus
ENSPFOG00000006683	a1cf	100	78.176	ENSCJAG00000005045	A1CF	100	76.384	Callithrix_jacchus
ENSPFOG00000006683	a1cf	100	77.199	ENSCAFG00000015581	A1CF	100	75.570	Canis_familiaris
ENSPFOG00000006683	a1cf	100	77.199	ENSCAFG00020026421	A1CF	98	82.274	Canis_lupus_dingo
ENSPFOG00000006683	a1cf	100	78.176	ENSCHIG00000020411	A1CF	100	77.036	Capra_hircus
ENSPFOG00000006683	a1cf	94	77.241	ENSTSYG00000001755	A1CF	100	74.655	Carlito_syrichta
ENSPFOG00000006683	a1cf	100	73.178	ENSCAPG00000017386	A1CF	100	75.080	Cavia_aperea
ENSPFOG00000006683	a1cf	100	76.873	ENSCPOG00000009807	A1CF	100	75.244	Cavia_porcellus
ENSPFOG00000006683	a1cf	100	78.176	ENSCCAG00000018168	A1CF	100	76.221	Cebus_capucinus
ENSPFOG00000006683	a1cf	100	76.384	ENSCATG00000043715	A1CF	100	74.919	Cercocebus_atys
ENSPFOG00000006683	a1cf	100	76.710	ENSCLAG00000010424	A1CF	100	74.756	Chinchilla_lanigera
ENSPFOG00000006683	a1cf	100	77.362	ENSCSAG00000007032	A1CF	100	75.896	Chlorocebus_sabaeus
ENSPFOG00000006683	a1cf	98	73.311	ENSCHOG00000009089	A1CF	94	73.973	Choloepus_hoffmanni
ENSPFOG00000006683	a1cf	100	78.013	ENSCPBG00000026464	A1CF	100	76.221	Chrysemys_picta_bellii
ENSPFOG00000006683	a1cf	100	77.524	ENSCANG00000038032	A1CF	100	76.059	Colobus_angolensis_palliatus
ENSPFOG00000006683	a1cf	100	76.873	ENSCGRG00001017413	A1cf	100	75.570	Cricetulus_griseus_chok1gshd
ENSPFOG00000006683	a1cf	100	75.812	ENSCGRG00000017332	A1cf	100	74.919	Cricetulus_griseus_crigri
ENSPFOG00000006683	a1cf	100	86.016	ENSCSEG00000002361	a1cf	100	86.268	Cynoglossus_semilaevis
ENSPFOG00000006683	a1cf	100	94.625	ENSCVAG00000010520	a1cf	100	94.625	Cyprinodon_variegatus
ENSPFOG00000006683	a1cf	100	81.759	ENSDARG00000002968	a1cf	100	80.456	Danio_rerio
ENSPFOG00000006683	a1cf	100	77.362	ENSDNOG00000002829	A1CF	100	76.059	Dasypus_novemcinctus
ENSPFOG00000006683	a1cf	81	84.058	ENSETEG00000012527	A1CF	81	84.058	Echinops_telfairi
ENSPFOG00000006683	a1cf	100	77.561	ENSEASG00005012924	A1CF	100	76.098	Equus_asinus_asinus
ENSPFOG00000006683	a1cf	100	77.236	ENSECAG00000010424	A1CF	100	75.772	Equus_caballus
ENSPFOG00000006683	a1cf	79	66.322	ENSEEUG00000000013	A1CF	97	65.451	Erinaceus_europaeus
ENSPFOG00000006683	a1cf	100	82.248	ENSELUG00000003159	a1cf	100	81.270	Esox_lucius
ENSPFOG00000006683	a1cf	100	75.487	ENSFCAG00000011179	A1CF	100	74.593	Felis_catus
ENSPFOG00000006683	a1cf	100	77.036	ENSFALG00000013183	A1CF	100	75.407	Ficedula_albicollis
ENSPFOG00000006683	a1cf	100	76.221	ENSFDAG00000019371	A1CF	100	74.756	Fukomys_damarensis
ENSPFOG00000006683	a1cf	100	87.948	ENSFHEG00000019652	a1cf	96	96.094	Fundulus_heteroclitus
ENSPFOG00000006683	a1cf	100	79.479	ENSGMOG00000018943	a1cf	100	78.339	Gadus_morhua
ENSPFOG00000006683	a1cf	96	76.740	ENSGALG00000003765	A1CF	96	75.559	Gallus_gallus
ENSPFOG00000006683	a1cf	100	88.599	ENSGAFG00000014868	a1cf	100	88.111	Gambusia_affinis
ENSPFOG00000006683	a1cf	100	87.134	ENSGACG00000010241	a1cf	100	86.156	Gasterosteus_aculeatus
ENSPFOG00000006683	a1cf	96	76.740	ENSGAGG00000016508	A1CF	98	74.873	Gopherus_agassizii
ENSPFOG00000006683	a1cf	100	77.362	ENSGGOG00000009670	A1CF	100	75.896	Gorilla_gorilla
ENSPFOG00000006683	a1cf	100	87.642	ENSHBUG00000021959	a1cf	100	87.805	Haplochromis_burtoni
ENSPFOG00000006683	a1cf	100	77.524	ENSHGLG00000008955	A1CF	100	75.570	Heterocephalus_glaber_female
ENSPFOG00000006683	a1cf	100	76.873	ENSHGLG00100000518	A1CF	100	74.919	Heterocephalus_glaber_male
ENSPFOG00000006683	a1cf	100	75.080	ENSHCOG00000017669	a1cf	100	77.010	Hippocampus_comes
ENSPFOG00000006683	a1cf	89	84.375	ENSIPUG00000010367	a1cf	95	83.272	Ictalurus_punctatus
ENSPFOG00000006683	a1cf	100	91.248	ENSKMAG00000006568	a1cf	100	89.303	Kryptolebias_marmoratus
ENSPFOG00000006683	a1cf	99	89.577	ENSLBEG00000020994	a1cf	99	89.414	Labrus_bergylta
ENSPFOG00000006683	a1cf	100	77.687	ENSLACG00000008061	A1CF	100	75.896	Latimeria_chalumnae
ENSPFOG00000006683	a1cf	100	82.899	ENSLOCG00000006302	a1cf	100	81.107	Lepisosteus_oculatus
ENSPFOG00000006683	a1cf	100	77.524	ENSLAFG00000015462	A1CF	100	76.710	Loxodonta_africana
ENSPFOG00000006683	a1cf	100	76.384	ENSMFAG00000035948	A1CF	100	74.919	Macaca_fascicularis
ENSPFOG00000006683	a1cf	100	76.384	ENSMMUG00000007077	A1CF	100	74.919	Macaca_mulatta
ENSPFOG00000006683	a1cf	100	76.221	ENSMNEG00000031454	A1CF	100	74.756	Macaca_nemestrina
ENSPFOG00000006683	a1cf	100	77.524	ENSMLEG00000037223	A1CF	100	76.059	Mandrillus_leucophaeus
ENSPFOG00000006683	a1cf	100	87.805	ENSMAMG00000010402	a1cf	100	86.504	Mastacembelus_armatus
ENSPFOG00000006683	a1cf	100	86.971	ENSMZEG00005013245	a1cf	100	85.227	Maylandia_zebra
ENSPFOG00000006683	a1cf	100	76.911	ENSMGAG00000001507	A1CF	100	75.285	Meleagris_gallopavo
ENSPFOG00000006683	a1cf	100	76.384	ENSMAUG00000007422	A1cf	100	75.244	Mesocricetus_auratus
ENSPFOG00000006683	a1cf	100	75.487	ENSMICG00000003377	A1CF	100	74.838	Microcebus_murinus
ENSPFOG00000006683	a1cf	100	76.710	ENSMOCG00000021536	A1cf	100	75.244	Microtus_ochrogaster
ENSPFOG00000006683	a1cf	100	76.221	ENSMMOG00000009422	a1cf	100	75.244	Mola_mola
ENSPFOG00000006683	a1cf	89	77.798	ENSMODG00000016478	A1CF	97	75.963	Monodelphis_domestica
ENSPFOG00000006683	a1cf	100	79.126	ENSMALG00000012992	a1cf	100	78.664	Monopterus_albus
ENSPFOG00000006683	a1cf	100	76.547	MGP_CAROLIEiJ_G0022873	A1cf	100	75.081	Mus_caroli
ENSPFOG00000006683	a1cf	100	76.547	ENSMUSG00000052595	A1cf	99	82.292	Mus_musculus
ENSPFOG00000006683	a1cf	100	75.733	MGP_PahariEiJ_G0014366	A1cf	100	74.267	Mus_pahari
ENSPFOG00000006683	a1cf	100	76.547	MGP_SPRETEiJ_G0023792	A1cf	100	75.081	Mus_spretus
ENSPFOG00000006683	a1cf	100	72.313	ENSMPUG00000016971	A1CF	100	70.684	Mustela_putorius_furo
ENSPFOG00000006683	a1cf	100	77.110	ENSMLUG00000016071	A1CF	100	76.221	Myotis_lucifugus
ENSPFOG00000006683	a1cf	100	77.362	ENSNGAG00000015136	A1cf	100	75.733	Nannospalax_galili
ENSPFOG00000006683	a1cf	100	87.805	ENSNBRG00000001712	a1cf	100	87.967	Neolamprologus_brichardi
ENSPFOG00000006683	a1cf	100	78.013	ENSNLEG00000012028	A1CF	100	76.547	Nomascus_leucogenys
ENSPFOG00000006683	a1cf	94	76.379	ENSMEUG00000015909	A1CF	100	73.966	Notamacropus_eugenii
ENSPFOG00000006683	a1cf	88	70.425	ENSOPRG00000010667	A1CF	100	67.496	Ochotona_princeps
ENSPFOG00000006683	a1cf	100	88.293	ENSONIG00000019105	a1cf	100	87.642	Oreochromis_niloticus
ENSPFOG00000006683	a1cf	78	77.226	ENSOANG00000007360	A1CF	99	76.605	Ornithorhynchus_anatinus
ENSPFOG00000006683	a1cf	100	75.570	ENSOCUG00000011587	A1CF	100	74.104	Oryctolagus_cuniculus
ENSPFOG00000006683	a1cf	100	85.505	ENSORLG00000013342	a1cf	100	85.691	Oryzias_latipes
ENSPFOG00000006683	a1cf	100	88.130	ENSORLG00020000586	a1cf	100	88.293	Oryzias_latipes_hni
ENSPFOG00000006683	a1cf	100	88.130	ENSORLG00015018569	a1cf	100	88.293	Oryzias_latipes_hsok
ENSPFOG00000006683	a1cf	100	86.971	ENSOMEG00000013531	a1cf	100	86.645	Oryzias_melastigma
ENSPFOG00000006683	a1cf	100	76.710	ENSOGAG00000012884	A1CF	100	76.059	Otolemur_garnettii
ENSPFOG00000006683	a1cf	100	77.850	ENSOARG00000013695	A1CF	100	76.710	Ovis_aries
ENSPFOG00000006683	a1cf	97	75.798	ENSPPAG00000028115	A1CF	99	79.216	Pan_paniscus
ENSPFOG00000006683	a1cf	100	76.623	ENSPPRG00000012180	A1CF	100	75.733	Panthera_pardus
ENSPFOG00000006683	a1cf	100	76.623	ENSPTIG00000021223	A1CF	100	75.733	Panthera_tigris_altaica
ENSPFOG00000006683	a1cf	100	77.362	ENSPTRG00000002508	A1CF	100	75.896	Pan_troglodytes
ENSPFOG00000006683	a1cf	100	76.384	ENSPANG00000021988	A1CF	100	74.919	Papio_anubis
ENSPFOG00000006683	a1cf	100	81.107	ENSPKIG00000025176	a1cf	100	80.130	Paramormyrops_kingsleyae
ENSPFOG00000006683	a1cf	100	76.710	ENSPSIG00000010318	A1CF	100	75.081	Pelodiscus_sinensis
ENSPFOG00000006683	a1cf	98	69.702	ENSPMGG00000013359	a1cf	99	69.294	Periophthalmus_magnuspinnatus
ENSPFOG00000006683	a1cf	100	77.036	ENSPEMG00000015021	A1cf	100	75.570	Peromyscus_maniculatus_bairdii
ENSPFOG00000006683	a1cf	100	76.384	ENSPCIG00000002175	A1CF	100	74.756	Phascolarctos_cinereus
ENSPFOG00000006683	a1cf	100	98.208	ENSPLAG00000001210	-	100	98.208	Poecilia_latipinna
ENSPFOG00000006683	a1cf	100	98.208	ENSPLAG00000000026	a1cf	100	98.208	Poecilia_latipinna
ENSPFOG00000006683	a1cf	100	89.414	ENSPMEG00000015529	-	100	89.414	Poecilia_mexicana
ENSPFOG00000006683	a1cf	100	88.111	ENSPMEG00000000921	a1cf	100	88.111	Poecilia_mexicana
ENSPFOG00000006683	a1cf	100	98.208	ENSPREG00000016298	a1cf	100	98.208	Poecilia_reticulata
ENSPFOG00000006683	a1cf	100	76.873	ENSPPYG00000002819	A1CF	100	75.407	Pongo_abelii
ENSPFOG00000006683	a1cf	80	60.081	ENSPCAG00000006463	A1CF	79	59.470	Procavia_capensis
ENSPFOG00000006683	a1cf	100	76.547	ENSPCOG00000024172	A1CF	100	75.733	Propithecus_coquereli
ENSPFOG00000006683	a1cf	100	89.268	ENSPNYG00000017944	a1cf	100	89.431	Pundamilia_nyererei
ENSPFOG00000006683	a1cf	100	82.305	ENSPNAG00000007704	a1cf	100	81.494	Pygocentrus_nattereri
ENSPFOG00000006683	a1cf	100	75.733	ENSRNOG00000033195	A1cf	100	74.267	Rattus_norvegicus
ENSPFOG00000006683	a1cf	100	71.753	ENSRBIG00000042892	A1CF	100	72.401	Rhinopithecus_bieti
ENSPFOG00000006683	a1cf	100	77.524	ENSRROG00000041398	A1CF	100	76.059	Rhinopithecus_roxellana
ENSPFOG00000006683	a1cf	100	78.176	ENSSBOG00000021930	A1CF	100	76.710	Saimiri_boliviensis_boliviensis
ENSPFOG00000006683	a1cf	100	77.362	ENSSHAG00000005096	A1CF	100	75.081	Sarcophilus_harrisii
ENSPFOG00000006683	a1cf	100	81.656	ENSSFOG00015011774	a1cf	100	81.006	Scleropages_formosus
ENSPFOG00000006683	a1cf	100	89.448	ENSSMAG00000013271	a1cf	100	89.448	Scophthalmus_maximus
ENSPFOG00000006683	a1cf	100	89.902	ENSSDUG00000013930	a1cf	100	89.577	Seriola_dumerili
ENSPFOG00000006683	a1cf	100	81.270	ENSSLDG00000004290	a1cf	100	81.596	Seriola_lalandi_dorsalis
ENSPFOG00000006683	a1cf	95	68.439	ENSSARG00000005940	A1CF	95	67.925	Sorex_araneus
ENSPFOG00000006683	a1cf	95	76.621	ENSSPUG00000006797	A1CF	95	74.490	Sphenodon_punctatus
ENSPFOG00000006683	a1cf	100	78.013	ENSSSCG00000010431	A1CF	100	76.710	Sus_scrofa
ENSPFOG00000006683	a1cf	100	78.537	ENSTGUG00000005090	A1CF	100	76.748	Taeniopygia_guttata
ENSPFOG00000006683	a1cf	100	87.642	ENSTRUG00000001982	a1cf	100	88.130	Takifugu_rubripes
ENSPFOG00000006683	a1cf	100	86.851	ENSTNIG00000003580	a1cf	100	86.851	Tetraodon_nigroviridis
ENSPFOG00000006683	a1cf	95	72.213	ENSTTRG00000013190	A1CF	94	71.012	Tursiops_truncatus
ENSPFOG00000006683	a1cf	100	76.059	ENSUAMG00000020065	A1CF	100	74.430	Ursus_americanus
ENSPFOG00000006683	a1cf	100	76.710	ENSUMAG00000011162	A1CF	100	75.244	Ursus_maritimus
ENSPFOG00000006683	a1cf	87	73.420	ENSVPAG00000006130	A1CF	86	71.747	Vicugna_pacos
ENSPFOG00000006683	a1cf	100	76.221	ENSVVUG00000002504	A1CF	100	74.593	Vulpes_vulpes
ENSPFOG00000006683	a1cf	100	72.313	ENSXETG00000006611	a1cf	100	71.498	Xenopus_tropicalis
ENSPFOG00000006683	a1cf	100	96.580	ENSXCOG00000003302	a1cf	100	96.580	Xiphophorus_couchianus
ENSPFOG00000006683	a1cf	100	97.883	ENSXMAG00000016703	a1cf	100	97.883	Xiphophorus_maculatus