EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000007289 (Gene tree)
Gene ID: -
Gene Symbol: pum1
Alias: -
Full Name: pumilio RNA-binding family member 1
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 23787 bases
Position: chrKI519631.1:1493622-1517408
Accession: ZDB-GENE-030131-2074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	1	8
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	2	8
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	3	8
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	4	8
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	5	8
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	6	8
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	7	8
ENSPFOP00000007561	PUF	PF00806.19	3.3e-72	8	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	1	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	2	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	3	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	4	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	5	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	6	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	7	8
ENSPFOP00000030991	PUF	PF00806.19	4.9e-70	8	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	1	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	2	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	3	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	4	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	5	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	6	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	7	8
ENSPFOP00000026964	PUF	PF00806.19	6e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000031541	-	7116	-	ENSPFOP00000026964	1138 (aa)	-	A0A096M6C3
ENSPFOT00000007573	-	5997	-	ENSPFOP00000007561	650 (aa)	-	A0A087XP58
ENSPFOT00000030874	-	7044	-	ENSPFOP00000030991	1114 (aa)	-	A0A096MHV0

Gene Model

Click here to download ENSPFOG00000007289's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000007289's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000007289	pum1	99	70.431	ENSPFOG00000019208	pum2	94	62.991

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000007289	pum1	93	90.361	ENSG00000134644	PUM1	93	90.843	Homo_sapiens
ENSPFOG00000007289	pum1	99	97.994	ENSAPOG00000021632	pum1	95	97.484	Acanthochromis_polyacanthus
ENSPFOG00000007289	pum1	99	82.443	ENSAMEG00000017656	PUM1	92	77.340	Ailuropoda_melanoleuca
ENSPFOG00000007289	pum1	100	97.307	ENSACIG00000021013	pum1	96	97.307	Amphilophus_citrinellus
ENSPFOG00000007289	pum1	99	97.994	ENSAOCG00000003944	pum1	100	98.072	Amphiprion_ocellaris
ENSPFOG00000007289	pum1	99	97.994	ENSAPEG00000014550	pum1	100	98.072	Amphiprion_percula
ENSPFOG00000007289	pum1	99	97.685	ENSATEG00000016004	pum1	100	98.072	Anabas_testudineus
ENSPFOG00000007289	pum1	99	83.180	ENSAPLG00000009351	PUM1	95	77.933	Anas_platyrhynchos
ENSPFOG00000007289	pum1	99	83.282	ENSACAG00000000682	PUM1	93	77.544	Anolis_carolinensis
ENSPFOG00000007289	pum1	93	90.120	ENSANAG00000027865	PUM1	94	90.602	Aotus_nancymaae
ENSPFOG00000007289	pum1	99	97.685	ENSACLG00000019354	pum1	100	97.191	Astatotilapia_calliptera
ENSPFOG00000007289	pum1	99	85.340	ENSAMXG00000020607	pum1	92	82.948	Astyanax_mexicanus
ENSPFOG00000007289	pum1	93	90.843	ENSBTAG00000018979	PUM1	94	91.325	Bos_taurus
ENSPFOG00000007289	pum1	93	90.361	ENSCJAG00000006035	PUM1	94	90.843	Callithrix_jacchus
ENSPFOG00000007289	pum1	99	80.492	ENSCAFG00000011205	PUM1	94	75.614	Canis_familiaris
ENSPFOG00000007289	pum1	99	82.569	ENSCAFG00020024616	PUM1	98	90.843	Canis_lupus_dingo
ENSPFOG00000007289	pum1	93	90.361	ENSCHIG00000012952	PUM1	94	90.843	Capra_hircus
ENSPFOG00000007289	pum1	99	82.263	ENSTSYG00000008868	PUM1	93	83.744	Carlito_syrichta
ENSPFOG00000007289	pum1	99	82.110	ENSCPOG00000031613	PUM1	93	83.498	Cavia_porcellus
ENSPFOG00000007289	pum1	93	90.843	ENSCATG00000017991	PUM1	94	91.325	Cercocebus_atys
ENSPFOG00000007289	pum1	93	90.120	ENSCLAG00000007662	PUM1	94	90.602	Chinchilla_lanigera
ENSPFOG00000007289	pum1	99	82.416	ENSCSAG00000001028	PUM1	95	76.149	Chlorocebus_sabaeus
ENSPFOG00000007289	pum1	93	68.118	ENSCHOG00000010245	PUM1	87	67.030	Choloepus_hoffmanni
ENSPFOG00000007289	pum1	93	91.325	ENSCPBG00000009288	PUM1	94	91.325	Chrysemys_picta_bellii
ENSPFOG00000007289	pum1	93	90.361	ENSCANG00000042606	PUM1	94	90.843	Colobus_angolensis_palliatus
ENSPFOG00000007289	pum1	99	82.083	ENSCGRG00001024949	Pum1	93	83.477	Cricetulus_griseus_chok1gshd
ENSPFOG00000007289	pum1	99	82.083	ENSCGRG00000014197	Pum1	93	83.477	Cricetulus_griseus_crigri
ENSPFOG00000007289	pum1	99	96.759	ENSCSEG00000015981	pum1	100	95.229	Cynoglossus_semilaevis
ENSPFOG00000007289	pum1	99	98.457	ENSCVAG00000007043	pum1	95	97.664	Cyprinodon_variegatus
ENSPFOG00000007289	pum1	99	87.211	ENSDARG00000099256	pum1	95	82.327	Danio_rerio
ENSPFOG00000007289	pum1	99	83.028	ENSDNOG00000010939	PUM1	95	77.408	Dasypus_novemcinctus
ENSPFOG00000007289	pum1	90	90.120	ENSDORG00000001875	Pum1	100	90.602	Dipodomys_ordii
ENSPFOG00000007289	pum1	96	73.486	ENSETEG00000004355	PUM1	87	72.579	Echinops_telfairi
ENSPFOG00000007289	pum1	99	82.569	ENSEASG00005010813	PUM1	95	77.408	Equus_asinus_asinus
ENSPFOG00000007289	pum1	99	82.569	ENSECAG00000021369	PUM1	95	77.320	Equus_caballus
ENSPFOG00000007289	pum1	75	90.000	ENSEEUG00000003871	PUM1	69	90.444	Erinaceus_europaeus
ENSPFOG00000007289	pum1	99	91.525	ENSELUG00000002409	pum1	94	96.667	Esox_lucius
ENSPFOG00000007289	pum1	93	90.843	ENSFCAG00000010374	PUM1	94	91.325	Felis_catus
ENSPFOG00000007289	pum1	99	82.549	ENSFALG00000001214	PUM1	92	76.809	Ficedula_albicollis
ENSPFOG00000007289	pum1	99	82.110	ENSFDAG00000011319	PUM1	93	83.374	Fukomys_damarensis
ENSPFOG00000007289	pum1	81	97.353	ENSGMOG00000010491	pum1	95	90.000	Gadus_morhua
ENSPFOG00000007289	pum1	96	89.940	ENSGALG00000042598	PUM1	94	89.940	Gallus_gallus
ENSPFOG00000007289	pum1	99	98.473	ENSGAFG00000015617	pum1	95	98.473	Gambusia_affinis
ENSPFOG00000007289	pum1	99	96.914	ENSGACG00000005717	pum1	96	93.896	Gasterosteus_aculeatus
ENSPFOG00000007289	pum1	96	90.141	ENSGAGG00000001290	PUM1	94	90.141	Gopherus_agassizii
ENSPFOG00000007289	pum1	93	90.361	ENSGGOG00000011983	PUM1	94	90.843	Gorilla_gorilla
ENSPFOG00000007289	pum1	99	97.685	ENSHBUG00000018718	pum1	95	97.305	Haplochromis_burtoni
ENSPFOG00000007289	pum1	99	81.957	ENSHGLG00000013819	Pum1	93	83.374	Heterocephalus_glaber_female
ENSPFOG00000007289	pum1	99	81.957	ENSHGLG00100008621	Pum1	93	83.374	Heterocephalus_glaber_male
ENSPFOG00000007289	pum1	99	86.287	ENSHCOG00000005149	pum1	100	89.149	Hippocampus_comes
ENSPFOG00000007289	pum1	99	87.328	ENSIPUG00000020421	pum1	95	82.259	Ictalurus_punctatus
ENSPFOG00000007289	pum1	99	82.416	ENSSTOG00000010757	PUM1	93	83.744	Ictidomys_tridecemlineatus
ENSPFOG00000007289	pum1	99	82.263	ENSJJAG00000000530	Pum1	93	83.498	Jaculus_jaculus
ENSPFOG00000007289	pum1	99	97.994	ENSKMAG00000003481	pum1	95	97.125	Kryptolebias_marmoratus
ENSPFOG00000007289	pum1	99	97.222	ENSLBEG00000002527	pum1	95	96.226	Labrus_bergylta
ENSPFOG00000007289	pum1	99	79.300	ENSLACG00000017188	PUM1	94	75.154	Latimeria_chalumnae
ENSPFOG00000007289	pum1	99	87.365	ENSLOCG00000005210	pum1	94	82.597	Lepisosteus_oculatus
ENSPFOG00000007289	pum1	99	83.792	ENSLAFG00000003178	PUM1	95	77.671	Loxodonta_africana
ENSPFOG00000007289	pum1	93	90.843	ENSMFAG00000010291	PUM1	94	91.325	Macaca_fascicularis
ENSPFOG00000007289	pum1	93	90.361	ENSMMUG00000013520	PUM1	94	90.843	Macaca_mulatta
ENSPFOG00000007289	pum1	93	90.361	ENSMNEG00000034639	PUM1	94	90.843	Macaca_nemestrina
ENSPFOG00000007289	pum1	93	90.361	ENSMLEG00000038743	PUM1	94	90.843	Mandrillus_leucophaeus
ENSPFOG00000007289	pum1	99	97.377	ENSMAMG00000011606	pum1	95	96.945	Mastacembelus_armatus
ENSPFOG00000007289	pum1	99	97.685	ENSMZEG00005005834	pum1	95	97.305	Maylandia_zebra
ENSPFOG00000007289	pum1	99	83.461	ENSMGAG00000000724	PUM1	95	77.145	Meleagris_gallopavo
ENSPFOG00000007289	pum1	99	82.389	ENSMAUG00000022090	Pum1	93	83.580	Mesocricetus_auratus
ENSPFOG00000007289	pum1	93	89.423	ENSMICG00000012213	-	94	87.952	Microcebus_murinus
ENSPFOG00000007289	pum1	93	90.361	ENSMICG00000007713	-	94	90.843	Microcebus_murinus
ENSPFOG00000007289	pum1	99	82.083	ENSMOCG00000015463	Pum1	93	83.477	Microtus_ochrogaster
ENSPFOG00000007289	pum1	96	97.349	ENSMMOG00000019817	pum1	100	70.914	Mola_mola
ENSPFOG00000007289	pum1	99	83.028	ENSMODG00000017067	PUM1	94	77.165	Monodelphis_domestica
ENSPFOG00000007289	pum1	90	98.072	ENSMALG00000016399	pum1	100	98.072	Monopterus_albus
ENSPFOG00000007289	pum1	99	81.651	MGP_CAROLIEiJ_G0026549	Pum1	93	83.374	Mus_caroli
ENSPFOG00000007289	pum1	99	81.498	ENSMUSG00000028580	Pum1	93	83.251	Mus_musculus
ENSPFOG00000007289	pum1	99	81.498	MGP_PahariEiJ_G0028881	Pum1	93	83.251	Mus_pahari
ENSPFOG00000007289	pum1	99	81.498	MGP_SPRETEiJ_G0027529	Pum1	93	83.128	Mus_spretus
ENSPFOG00000007289	pum1	99	82.722	ENSMPUG00000015454	PUM1	95	77.320	Mustela_putorius_furo
ENSPFOG00000007289	pum1	99	82.416	ENSMLUG00000006490	PUM1	95	76.970	Myotis_lucifugus
ENSPFOG00000007289	pum1	99	82.416	ENSNGAG00000002378	Pum1	93	83.744	Nannospalax_galili
ENSPFOG00000007289	pum1	99	97.531	ENSNBRG00000010689	pum1	93	98.500	Neolamprologus_brichardi
ENSPFOG00000007289	pum1	93	87.229	ENSNLEG00000001151	PUM1	94	87.711	Nomascus_leucogenys
ENSPFOG00000007289	pum1	89	77.931	ENSMEUG00000000976	-	63	80.108	Notamacropus_eugenii
ENSPFOG00000007289	pum1	82	91.589	ENSOPRG00000001776	PUM1	69	91.589	Ochotona_princeps
ENSPFOG00000007289	pum1	99	81.498	ENSODEG00000003465	PUM1	93	83.498	Octodon_degus
ENSPFOG00000007289	pum1	99	97.994	ENSONIG00000002290	pum1	95	97.484	Oreochromis_niloticus
ENSPFOG00000007289	pum1	96	65.154	ENSOANG00000004902	-	100	62.967	Ornithorhynchus_anatinus
ENSPFOG00000007289	pum1	99	82.209	ENSOCUG00000008641	PUM1	94	77.281	Oryctolagus_cuniculus
ENSPFOG00000007289	pum1	99	97.531	ENSORLG00000011482	pum1	95	96.419	Oryzias_latipes
ENSPFOG00000007289	pum1	99	97.531	ENSORLG00020019461	pum1	95	96.419	Oryzias_latipes_hni
ENSPFOG00000007289	pum1	99	97.685	ENSORLG00015011375	pum1	95	96.509	Oryzias_latipes_hsok
ENSPFOG00000007289	pum1	92	97.831	ENSOMEG00000009312	pum1	100	97.831	Oryzias_melastigma
ENSPFOG00000007289	pum1	99	77.439	ENSOGAG00000011063	PUM1	95	74.476	Otolemur_garnettii
ENSPFOG00000007289	pum1	93	90.361	ENSOARG00000001899	PUM1	94	90.843	Ovis_aries
ENSPFOG00000007289	pum1	93	90.361	ENSPPAG00000044003	PUM1	94	90.843	Pan_paniscus
ENSPFOG00000007289	pum1	99	82.569	ENSPPRG00000001370	PUM1	93	83.867	Panthera_pardus
ENSPFOG00000007289	pum1	99	82.569	ENSPTIG00000010798	PUM1	93	83.867	Panthera_tigris_altaica
ENSPFOG00000007289	pum1	93	90.361	ENSPTRG00000000453	PUM1	94	90.843	Pan_troglodytes
ENSPFOG00000007289	pum1	93	90.843	ENSPANG00000016338	PUM1	94	91.325	Papio_anubis
ENSPFOG00000007289	pum1	95	92.771	ENSPKIG00000010578	pum1	94	85.350	Paramormyrops_kingsleyae
ENSPFOG00000007289	pum1	99	83.180	ENSPSIG00000014118	PUM1	95	77.933	Pelodiscus_sinensis
ENSPFOG00000007289	pum1	99	94.360	ENSPMGG00000005836	pum1	94	96.667	Periophthalmus_magnuspinnatus
ENSPFOG00000007289	pum1	99	82.389	ENSPEMG00000010009	Pum1	93	83.580	Peromyscus_maniculatus_bairdii
ENSPFOG00000007289	pum1	93	91.325	ENSPCIG00000014151	PUM1	94	91.084	Phascolarctos_cinereus
ENSPFOG00000007289	pum1	100	99.912	ENSPLAG00000007256	pum1	95	99.912	Poecilia_latipinna
ENSPFOG00000007289	pum1	99	99.228	ENSPMEG00000019543	pum1	99	99.441	Poecilia_mexicana
ENSPFOG00000007289	pum1	99	98.765	ENSPREG00000005195	pum1	94	100.000	Poecilia_reticulata
ENSPFOG00000007289	pum1	99	82.416	ENSPPYG00000001621	PUM1	95	75.729	Pongo_abelii
ENSPFOG00000007289	pum1	77	92.593	ENSPCAG00000001979	PUM1	68	92.593	Procavia_capensis
ENSPFOG00000007289	pum1	93	90.361	ENSPCOG00000004398	PUM1	94	90.843	Propithecus_coquereli
ENSPFOG00000007289	pum1	99	79.052	ENSPVAG00000005207	PUM1	92	75.372	Pteropus_vampyrus
ENSPFOG00000007289	pum1	99	97.685	ENSPNYG00000009518	pum1	95	97.394	Pundamilia_nyererei
ENSPFOG00000007289	pum1	99	89.043	ENSPNAG00000026728	pum1	95	83.304	Pygocentrus_nattereri
ENSPFOG00000007289	pum1	99	81.804	ENSRNOG00000011709	Pum1	95	76.970	Rattus_norvegicus
ENSPFOG00000007289	pum1	93	90.843	ENSRBIG00000042521	PUM1	94	91.325	Rhinopithecus_bieti
ENSPFOG00000007289	pum1	93	90.361	ENSRROG00000020156	PUM1	94	90.843	Rhinopithecus_roxellana
ENSPFOG00000007289	pum1	93	90.361	ENSSBOG00000032037	PUM1	94	90.843	Saimiri_boliviensis_boliviensis
ENSPFOG00000007289	pum1	99	82.875	ENSSHAG00000010918	PUM1	94	77.165	Sarcophilus_harrisii
ENSPFOG00000007289	pum1	99	97.222	ENSSMAG00000010918	pum1	100	98.072	Scophthalmus_maximus
ENSPFOG00000007289	pum1	99	97.840	ENSSDUG00000009021	pum1	95	97.305	Seriola_dumerili
ENSPFOG00000007289	pum1	99	97.840	ENSSLDG00000009667	pum1	95	97.574	Seriola_lalandi_dorsalis
ENSPFOG00000007289	pum1	99	82.722	ENSSARG00000003055	PUM1	83	81.808	Sorex_araneus
ENSPFOG00000007289	pum1	99	83.028	ENSSPUG00000006267	PUM1	95	77.758	Sphenodon_punctatus
ENSPFOG00000007289	pum1	99	97.994	ENSSPAG00000016636	pum1	100	98.072	Stegastes_partitus
ENSPFOG00000007289	pum1	100	88.531	ENSSSCG00000003591	PUM1	94	91.325	Sus_scrofa
ENSPFOG00000007289	pum1	99	97.377	ENSTRUG00000013121	pum1	94	97.875	Takifugu_rubripes
ENSPFOG00000007289	pum1	99	97.072	ENSTNIG00000016983	pum1	95	96.140	Tetraodon_nigroviridis
ENSPFOG00000007289	pum1	86	89.024	ENSTBEG00000013810	PUM1	83	89.024	Tupaia_belangeri
ENSPFOG00000007289	pum1	99	82.263	ENSTTRG00000007436	PUM1	88	78.020	Tursiops_truncatus
ENSPFOG00000007289	pum1	97	80.000	ENSUAMG00000018262	-	94	75.530	Ursus_americanus
ENSPFOG00000007289	pum1	93	90.843	ENSUMAG00000009211	PUM1	94	91.325	Ursus_maritimus
ENSPFOG00000007289	pum1	99	82.569	ENSVPAG00000005902	PUM1	87	84.236	Vicugna_pacos
ENSPFOG00000007289	pum1	93	90.843	ENSVVUG00000014631	PUM1	94	91.325	Vulpes_vulpes
ENSPFOG00000007289	pum1	99	76.911	ENSXETG00000012904	pum1	94	73.791	Xenopus_tropicalis
ENSPFOG00000007289	pum1	99	98.473	ENSXMAG00000002945	pum1	95	98.629	Xiphophorus_maculatus