EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000007890 (Gene tree)
Gene ID: 103137507
Gene Symbol: polr2a
Alias: -
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 14120 bases
Position: chrKI519651.1:497401-511520
Accession: 103137507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000008106	RNA_pol_Rpb1_5	PF04998.17	2.5e-101	1	1
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	1	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	2	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	3	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	4	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	5	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	6	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	7	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	8	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	9	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	10	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	11	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	12	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	13	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	14	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	15	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	16	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	17	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	18	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	19	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	20	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	21	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	22	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	23	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	24	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	25	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	26	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	27	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	28	29
ENSPFOP00000008106	RNA_pol_Rpb1_R	PF05001.13	4.3e-18	29	29
ENSPFOP00000008106	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSPFOP00000008106	RNA_pol_Rpb1_2	PF00623.20	8.9e-75	1	1
ENSPFOP00000008106	RNA_pol_Rpb1_3	PF04983.18	2.5e-50	1	1
ENSPFOP00000008106	RNA_pol_Rpb1_1	PF04997.12	6.4e-109	1	1
ENSPFOP00000008106	RNA_pol_Rpb1_7	PF04990.12	5.7e-55	1	1
ENSPFOP00000008106	RNA_pol_Rpb1_6	PF04992.14	4.5e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000008118	-	8086	XM_007551261	ENSPFOP00000008106	1907 (aa)	XP_007551323	A0A087XQQ3

Gene Model

Click here to download ENSPFOG00000007890's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000007890's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000007890	polr2a	59	34.286	ENSPFOG00000005025	polr1a	69	34.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000007890	polr2a	89	98.573	ENSAPOG00000006552	polr2a	88	98.573	Acanthochromis_polyacanthus
ENSPFOG00000007890	polr2a	99	94.238	ENSAMEG00000016265	-	85	94.245	Ailuropoda_melanoleuca
ENSPFOG00000007890	polr2a	85	95.533	ENSACIG00000015982	polr2a	99	96.728	Amphilophus_citrinellus
ENSPFOG00000007890	polr2a	85	98.697	ENSAOCG00000004255	polr2a	85	96.340	Amphiprion_ocellaris
ENSPFOG00000007890	polr2a	99	98.892	ENSAPEG00000012623	polr2a	99	98.892	Amphiprion_percula
ENSPFOG00000007890	polr2a	99	98.364	ENSATEG00000019644	polr2a	99	98.364	Anabas_testudineus
ENSPFOG00000007890	polr2a	99	94.720	ENSACAG00000014561	POLR2A	85	94.727	Anolis_carolinensis
ENSPFOG00000007890	polr2a	99	94.600	ENSANAG00000020093	-	91	92.436	Aotus_nancymaae
ENSPFOG00000007890	polr2a	99	98.153	ENSACLG00000006735	polr2a	99	98.153	Astatotilapia_calliptera
ENSPFOG00000007890	polr2a	99	97.731	ENSAMXG00000020046	polr2a	99	97.731	Astyanax_mexicanus
ENSPFOG00000007890	polr2a	99	94.600	ENSBTAG00000046765	POLR2A	85	94.606	Bos_taurus
ENSPFOG00000007890	polr2a	96	94.538	ENSCAFG00000016532	POLR2A	97	94.544	Canis_familiaris
ENSPFOG00000007890	polr2a	99	93.672	ENSCAFG00020007929	-	91	91.692	Canis_lupus_dingo
ENSPFOG00000007890	polr2a	99	94.600	ENSCHIG00000027173	-	85	94.606	Capra_hircus
ENSPFOG00000007890	polr2a	84	92.055	ENSTSYG00000012803	-	91	92.436	Carlito_syrichta
ENSPFOG00000007890	polr2a	98	91.051	ENSCAPG00000001882	-	88	93.616	Cavia_aperea
ENSPFOG00000007890	polr2a	99	91.038	ENSCPOG00000014812	-	91	93.428	Cavia_porcellus
ENSPFOG00000007890	polr2a	99	94.600	ENSCCAG00000020938	-	91	92.436	Cebus_capucinus
ENSPFOG00000007890	polr2a	99	94.600	ENSCATG00000013680	-	91	91.754	Cercocebus_atys
ENSPFOG00000007890	polr2a	99	94.475	ENSCLAG00000012196	-	91	92.312	Chinchilla_lanigera
ENSPFOG00000007890	polr2a	99	85.811	ENSCSAG00000011644	-	85	85.829	Chlorocebus_sabaeus
ENSPFOG00000007890	polr2a	95	90.932	ENSCPBG00000012697	POLR2A	99	83.648	Chrysemys_picta_bellii
ENSPFOG00000007890	polr2a	96	76.671	ENSCING00000007884	-	88	77.228	Ciona_intestinalis
ENSPFOG00000007890	polr2a	93	79.630	ENSCSAVG00000008334	-	96	81.560	Ciona_savignyi
ENSPFOG00000007890	polr2a	99	93.917	ENSCANG00000010622	-	91	90.915	Colobus_angolensis_palliatus
ENSPFOG00000007890	polr2a	84	88.199	ENSCGRG00001003538	Polr2a	84	88.275	Cricetulus_griseus_chok1gshd
ENSPFOG00000007890	polr2a	84	90.904	ENSCGRG00000012105	Polr2a	85	90.870	Cricetulus_griseus_crigri
ENSPFOG00000007890	polr2a	99	97.361	ENSCSEG00000002635	polr2a	99	97.361	Cynoglossus_semilaevis
ENSPFOG00000007890	polr2a	99	99.736	ENSCVAG00000005156	polr2a	99	99.736	Cyprinodon_variegatus
ENSPFOG00000007890	polr2a	99	97.416	ENSDARG00000099966	polr2a	99	97.416	Danio_rerio
ENSPFOG00000007890	polr2a	99	91.167	ENSDNOG00000016482	-	85	91.178	Dasypus_novemcinctus
ENSPFOG00000007890	polr2a	99	94.600	ENSDORG00000008667	Polr2a	91	92.436	Dipodomys_ordii
ENSPFOG00000007890	polr2a	99	70.095	FBgn0003277	RpII215	90	75.217	Drosophila_melanogaster
ENSPFOG00000007890	polr2a	94	90.407	ENSETEG00000002540	-	88	91.524	Echinops_telfairi
ENSPFOG00000007890	polr2a	84	87.274	ENSEBUG00000013967	polr2a	89	87.259	Eptatretus_burgeri
ENSPFOG00000007890	polr2a	96	92.551	ENSEASG00005019114	-	91	90.391	Equus_asinus_asinus
ENSPFOG00000007890	polr2a	99	94.600	ENSECAG00000018485	POLR2A	85	94.606	Equus_caballus
ENSPFOG00000007890	polr2a	86	94.459	ENSEEUG00000001154	-	95	94.459	Erinaceus_europaeus
ENSPFOG00000007890	polr2a	91	92.478	ENSELUG00000014284	polr2a	84	93.157	Esox_lucius
ENSPFOG00000007890	polr2a	99	94.538	ENSFDAG00000008287	-	85	94.544	Fukomys_damarensis
ENSPFOG00000007890	polr2a	99	99.472	ENSFHEG00000001768	polr2a	99	99.472	Fundulus_heteroclitus
ENSPFOG00000007890	polr2a	96	93.253	ENSGMOG00000007725	polr2a	100	93.281	Gadus_morhua
ENSPFOG00000007890	polr2a	100	94.661	ENSGAFG00000005389	polr2a	100	95.217	Gambusia_affinis
ENSPFOG00000007890	polr2a	99	94.015	ENSGACG00000019366	polr2a	100	93.792	Gasterosteus_aculeatus
ENSPFOG00000007890	polr2a	99	92.508	ENSGGOG00000014800	-	96	93.096	Gorilla_gorilla
ENSPFOG00000007890	polr2a	99	98.153	ENSHBUG00000018937	polr2a	99	98.153	Haplochromis_burtoni
ENSPFOG00000007890	polr2a	99	94.538	ENSHGLG00000012381	POLR2A	91	92.374	Heterocephalus_glaber_female
ENSPFOG00000007890	polr2a	99	94.538	ENSHGLG00100014843	POLR2A	91	92.374	Heterocephalus_glaber_male
ENSPFOG00000007890	polr2a	99	97.942	ENSHCOG00000011874	polr2a	99	97.942	Hippocampus_comes
ENSPFOG00000007890	polr2a	99	97.256	ENSIPUG00000002613	Polr2a	99	97.256	Ictalurus_punctatus
ENSPFOG00000007890	polr2a	99	94.600	ENSSTOG00000001304	-	91	92.436	Ictidomys_tridecemlineatus
ENSPFOG00000007890	polr2a	99	94.600	ENSJJAG00000013049	Polr2a	91	92.436	Jaculus_jaculus
ENSPFOG00000007890	polr2a	84	92.308	ENSKMAG00000016343	polr2a	86	92.308	Kryptolebias_marmoratus
ENSPFOG00000007890	polr2a	99	98.311	ENSLBEG00000027652	polr2a	99	98.311	Labrus_bergylta
ENSPFOG00000007890	polr2a	95	85.389	ENSLACG00000012071	POLR2A	88	85.461	Latimeria_chalumnae
ENSPFOG00000007890	polr2a	88	97.227	ENSLOCG00000013863	polr2a	86	96.772	Lepisosteus_oculatus
ENSPFOG00000007890	polr2a	99	94.600	ENSLAFG00000008626	-	86	94.606	Loxodonta_africana
ENSPFOG00000007890	polr2a	51	93.361	ENSMFAG00000007042	-	99	93.361	Macaca_fascicularis
ENSPFOG00000007890	polr2a	99	94.600	ENSMMUG00000023620	-	91	92.436	Macaca_mulatta
ENSPFOG00000007890	polr2a	99	94.165	ENSMNEG00000040407	-	91	92.683	Macaca_nemestrina
ENSPFOG00000007890	polr2a	98	90.127	ENSMLEG00000030263	-	99	93.361	Mandrillus_leucophaeus
ENSPFOG00000007890	polr2a	99	98.470	ENSMAMG00000003351	polr2a	99	98.470	Mastacembelus_armatus
ENSPFOG00000007890	polr2a	99	98.153	ENSMZEG00005021429	polr2a	99	98.153	Maylandia_zebra
ENSPFOG00000007890	polr2a	51	94.190	ENSMAUG00000021055	-	99	94.190	Mesocricetus_auratus
ENSPFOG00000007890	polr2a	99	94.538	ENSMICG00000013372	-	98	93.756	Microcebus_murinus
ENSPFOG00000007890	polr2a	99	90.025	ENSMOCG00000018279	Polr2a	97	90.235	Microtus_ochrogaster
ENSPFOG00000007890	polr2a	99	97.826	ENSMMOG00000012515	polr2a	96	97.826	Mola_mola
ENSPFOG00000007890	polr2a	99	94.351	ENSMODG00000007009	-	85	94.358	Monodelphis_domestica
ENSPFOG00000007890	polr2a	99	97.999	ENSMALG00000008716	polr2a	96	97.999	Monopterus_albus
ENSPFOG00000007890	polr2a	99	94.600	MGP_CAROLIEiJ_G0016587	Polr2a	91	92.436	Mus_caroli
ENSPFOG00000007890	polr2a	99	94.600	ENSMUSG00000005198	Polr2a	91	92.436	Mus_musculus
ENSPFOG00000007890	polr2a	99	92.460	MGP_PahariEiJ_G0017718	Polr2a	85	92.469	Mus_pahari
ENSPFOG00000007890	polr2a	99	94.600	MGP_SPRETEiJ_G0017423	Polr2a	91	92.436	Mus_spretus
ENSPFOG00000007890	polr2a	99	94.475	ENSMPUG00000009648	-	85	94.482	Mustela_putorius_furo
ENSPFOG00000007890	polr2a	99	93.986	ENSMLUG00000009088	-	85	93.994	Myotis_lucifugus
ENSPFOG00000007890	polr2a	99	94.600	ENSNGAG00000002543	Polr2a	91	92.436	Nannospalax_galili
ENSPFOG00000007890	polr2a	85	95.099	ENSNBRG00000002005	polr2a	99	96.306	Neolamprologus_brichardi
ENSPFOG00000007890	polr2a	99	93.127	ENSNLEG00000009460	-	91	92.436	Nomascus_leucogenys
ENSPFOG00000007890	polr2a	93	95.316	ENSMEUG00000008611	-	95	86.775	Notamacropus_eugenii
ENSPFOG00000007890	polr2a	83	94.315	ENSOPRG00000015116	-	99	94.315	Ochotona_princeps
ENSPFOG00000007890	polr2a	78	94.456	ENSODEG00000017674	-	100	89.914	Octodon_degus
ENSPFOG00000007890	polr2a	99	98.417	ENSONIG00000009231	polr2a	99	98.417	Oreochromis_niloticus
ENSPFOG00000007890	polr2a	98	90.517	ENSOCUG00000017929	-	99	94.482	Oryctolagus_cuniculus
ENSPFOG00000007890	polr2a	99	98.681	ENSORLG00000006431	polr2a	99	98.681	Oryzias_latipes
ENSPFOG00000007890	polr2a	99	98.681	ENSORLG00020010235	polr2a	99	98.681	Oryzias_latipes_hni
ENSPFOG00000007890	polr2a	99	98.575	ENSORLG00015007075	polr2a	99	98.575	Oryzias_latipes_hsok
ENSPFOG00000007890	polr2a	97	98.382	ENSOMEG00000010713	polr2a	100	98.382	Oryzias_melastigma
ENSPFOG00000007890	polr2a	99	94.600	ENSOGAG00000033608	-	85	94.606	Otolemur_garnettii
ENSPFOG00000007890	polr2a	89	94.600	ENSOARG00000013874	-	89	94.606	Ovis_aries
ENSPFOG00000007890	polr2a	84	91.943	ENSPPAG00000043734	-	83	92.152	Pan_paniscus
ENSPFOG00000007890	polr2a	99	93.127	ENSPTRG00000008691	POLR2A	91	92.436	Pan_troglodytes
ENSPFOG00000007890	polr2a	99	93.917	ENSPANG00000024099	-	91	91.754	Papio_anubis
ENSPFOG00000007890	polr2a	80	95.721	ENSPKIG00000005727	polr2a	85	95.656	Paramormyrops_kingsleyae
ENSPFOG00000007890	polr2a	98	92.770	ENSPSIG00000014006	POLR2A	100	92.689	Pelodiscus_sinensis
ENSPFOG00000007890	polr2a	100	97.567	ENSPMGG00000019734	polr2a	100	97.567	Periophthalmus_magnuspinnatus
ENSPFOG00000007890	polr2a	99	94.600	ENSPEMG00000012521	Polr2a	91	92.436	Peromyscus_maniculatus_bairdii
ENSPFOG00000007890	polr2a	88	94.355	ENSPCIG00000028851	-	82	94.355	Phascolarctos_cinereus
ENSPFOG00000007890	polr2a	100	100.000	ENSPLAG00000007399	polr2a	100	100.000	Poecilia_latipinna
ENSPFOG00000007890	polr2a	100	100.000	ENSPMEG00000002071	polr2a	100	100.000	Poecilia_mexicana
ENSPFOG00000007890	polr2a	99	99.947	ENSPREG00000013122	polr2a	99	99.947	Poecilia_reticulata
ENSPFOG00000007890	polr2a	91	94.868	ENSPCAG00000006951	-	77	94.868	Procavia_capensis
ENSPFOG00000007890	polr2a	99	93.296	ENSPCOG00000025260	-	91	92.436	Propithecus_coquereli
ENSPFOG00000007890	polr2a	99	94.289	ENSPVAG00000005069	-	85	94.296	Pteropus_vampyrus
ENSPFOG00000007890	polr2a	99	98.206	ENSPNYG00000022340	polr2a	99	98.206	Pundamilia_nyererei
ENSPFOG00000007890	polr2a	99	97.889	ENSPNAG00000011237	polr2a	99	97.889	Pygocentrus_nattereri
ENSPFOG00000007890	polr2a	99	94.538	ENSRNOG00000028834	Polr2a	85	94.544	Rattus_norvegicus
ENSPFOG00000007890	polr2a	84	94.227	ENSRBIG00000002471	-	86	94.234	Rhinopithecus_bieti
ENSPFOG00000007890	polr2a	96	94.600	ENSRROG00000029583	-	85	94.606	Rhinopithecus_roxellana
ENSPFOG00000007890	polr2a	84	49.815	YDL140C	RPO21	98	81.081	Saccharomyces_cerevisiae
ENSPFOG00000007890	polr2a	99	94.600	ENSSBOG00000000808	-	91	92.436	Saimiri_boliviensis_boliviensis
ENSPFOG00000007890	polr2a	84	94.351	ENSSHAG00000002858	-	84	94.358	Sarcophilus_harrisii
ENSPFOG00000007890	polr2a	99	97.889	ENSSFOG00015023275	polr2a	99	97.889	Scleropages_formosus
ENSPFOG00000007890	polr2a	85	97.705	ENSSMAG00000009137	polr2a	85	97.705	Scophthalmus_maximus
ENSPFOG00000007890	polr2a	99	98.575	ENSSDUG00000020466	polr2a	99	98.575	Seriola_dumerili
ENSPFOG00000007890	polr2a	99	98.522	ENSSLDG00000020613	polr2a	99	98.522	Seriola_lalandi_dorsalis
ENSPFOG00000007890	polr2a	98	90.191	ENSSARG00000005875	-	99	91.016	Sorex_araneus
ENSPFOG00000007890	polr2a	100	98.629	ENSSPAG00000016741	polr2a	95	98.629	Stegastes_partitus
ENSPFOG00000007890	polr2a	99	93.669	ENSSSCG00000028278	-	85	93.676	Sus_scrofa
ENSPFOG00000007890	polr2a	99	92.374	ENSTRUG00000012320	polr2a	81	92.374	Takifugu_rubripes
ENSPFOG00000007890	polr2a	97	96.712	ENSTNIG00000010136	polr2a	100	96.712	Tetraodon_nigroviridis
ENSPFOG00000007890	polr2a	73	94.481	ENSTBEG00000013294	-	56	94.481	Tupaia_belangeri
ENSPFOG00000007890	polr2a	99	92.924	ENSTTRG00000014273	-	85	92.932	Tursiops_truncatus
ENSPFOG00000007890	polr2a	90	94.180	ENSUAMG00000014866	-	95	91.651	Ursus_americanus
ENSPFOG00000007890	polr2a	92	91.991	ENSUMAG00000015732	-	83	92.003	Ursus_maritimus
ENSPFOG00000007890	polr2a	64	98.370	ENSVPAG00000008842	-	76	98.370	Vicugna_pacos
ENSPFOG00000007890	polr2a	84	94.538	ENSVVUG00000027878	-	83	94.544	Vulpes_vulpes
ENSPFOG00000007890	polr2a	83	94.147	ENSXETG00000012465	polr2a	85	94.155	Xenopus_tropicalis
ENSPFOG00000007890	polr2a	95	96.472	ENSXCOG00000001804	polr2a	99	97.023	Xiphophorus_couchianus
ENSPFOG00000007890	polr2a	99	99.894	ENSXMAG00000015687	polr2a	99	99.894	Xiphophorus_maculatus