EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000009950 (Gene tree)
Gene ID: 103142413
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine (psi) synthase family member 1
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 6202 bases
Position: chrKI519614.1:675111-681312
Accession: ZDB-GENE-080723-73
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000009910	TruB_N	PF01509.18	2.7e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000009925	-	3844	-	ENSPFOP00000009910	273 (aa)	-	A0A087XVV7

Gene Model

Click here to download ENSPFOG00000009950's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000009950's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000009950	trub1	72	33.500	ENSPFOG00000018018	trub2	52	33.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000009950	trub1	90	66.122	ENSG00000165832	TRUB1	70	66.122	Homo_sapiens
ENSPFOG00000009950	trub1	89	85.246	ENSAPOG00000020565	trub1	98	80.297	Acanthochromis_polyacanthus
ENSPFOG00000009950	trub1	90	65.992	ENSAMEG00000014931	TRUB1	70	65.992	Ailuropoda_melanoleuca
ENSPFOG00000009950	trub1	97	76.981	ENSACIG00000003060	trub1	89	76.981	Amphilophus_citrinellus
ENSPFOG00000009950	trub1	89	85.246	ENSAOCG00000017188	trub1	95	82.308	Amphiprion_ocellaris
ENSPFOG00000009950	trub1	94	83.268	ENSAPEG00000015209	trub1	98	80.297	Amphiprion_percula
ENSPFOG00000009950	trub1	90	84.959	ENSATEG00000023291	trub1	88	84.959	Anabas_testudineus
ENSPFOG00000009950	trub1	89	67.623	ENSAPLG00000006808	TRUB1	87	67.623	Anas_platyrhynchos
ENSPFOG00000009950	trub1	90	64.082	ENSACAG00000009282	TRUB1	88	64.082	Anolis_carolinensis
ENSPFOG00000009950	trub1	90	66.122	ENSANAG00000022870	TRUB1	70	66.122	Aotus_nancymaae
ENSPFOG00000009950	trub1	95	83.784	ENSACLG00000000823	trub1	93	83.784	Astatotilapia_calliptera
ENSPFOG00000009950	trub1	91	77.510	ENSAMXG00000015845	trub1	83	77.510	Astyanax_mexicanus
ENSPFOG00000009950	trub1	90	67.347	ENSBTAG00000012955	TRUB1	70	67.347	Bos_taurus
ENSPFOG00000009950	trub1	90	66.122	ENSCJAG00000047815	TRUB1	70	66.122	Callithrix_jacchus
ENSPFOG00000009950	trub1	90	66.531	ENSCAFG00000011688	TRUB1	70	66.531	Canis_familiaris
ENSPFOG00000009950	trub1	90	66.531	ENSCAFG00020013237	TRUB1	70	66.531	Canis_lupus_dingo
ENSPFOG00000009950	trub1	90	66.531	ENSCHIG00000020884	TRUB1	73	66.531	Capra_hircus
ENSPFOG00000009950	trub1	90	64.898	ENSTSYG00000000446	TRUB1	70	64.898	Carlito_syrichta
ENSPFOG00000009950	trub1	77	59.242	ENSCAPG00000017088	TRUB1	82	59.242	Cavia_aperea
ENSPFOG00000009950	trub1	68	64.516	ENSCPOG00000030129	-	72	64.516	Cavia_porcellus
ENSPFOG00000009950	trub1	67	65.574	ENSCPOG00000040236	-	75	65.574	Cavia_porcellus
ENSPFOG00000009950	trub1	90	66.122	ENSCCAG00000028842	TRUB1	70	66.122	Cebus_capucinus
ENSPFOG00000009950	trub1	90	66.122	ENSCATG00000033431	TRUB1	70	66.122	Cercocebus_atys
ENSPFOG00000009950	trub1	67	64.481	ENSCLAG00000008664	TRUB1	75	64.481	Chinchilla_lanigera
ENSPFOG00000009950	trub1	90	66.122	ENSCSAG00000004891	TRUB1	70	66.122	Chlorocebus_sabaeus
ENSPFOG00000009950	trub1	89	59.259	ENSCHOG00000011931	TRUB1	70	59.259	Choloepus_hoffmanni
ENSPFOG00000009950	trub1	90	69.796	ENSCPBG00000003051	TRUB1	84	69.796	Chrysemys_picta_bellii
ENSPFOG00000009950	trub1	90	66.122	ENSCANG00000029445	TRUB1	70	66.122	Colobus_angolensis_palliatus
ENSPFOG00000009950	trub1	87	57.563	ENSCGRG00001010322	-	66	57.143	Cricetulus_griseus_chok1gshd
ENSPFOG00000009950	trub1	78	66.509	ENSCGRG00001016772	-	71	66.355	Cricetulus_griseus_chok1gshd
ENSPFOG00000009950	trub1	87	65.126	ENSCGRG00000010806	Trub1	80	63.077	Cricetulus_griseus_crigri
ENSPFOG00000009950	trub1	93	78.346	ENSCSEG00000011261	trub1	82	78.346	Cynoglossus_semilaevis
ENSPFOG00000009950	trub1	93	85.490	ENSCVAG00000008791	trub1	78	85.490	Cyprinodon_variegatus
ENSPFOG00000009950	trub1	97	70.149	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSPFOG00000009950	trub1	90	64.082	ENSDNOG00000001069	TRUB1	70	64.082	Dasypus_novemcinctus
ENSPFOG00000009950	trub1	87	65.546	ENSDORG00000010431	Trub1	71	65.306	Dipodomys_ordii
ENSPFOG00000009950	trub1	66	64.234	ENSETEG00000009183	TRUB1	50	64.234	Echinops_telfairi
ENSPFOG00000009950	trub1	90	65.714	ENSEASG00005014739	TRUB1	70	65.714	Equus_asinus_asinus
ENSPFOG00000009950	trub1	90	65.714	ENSECAG00000007177	TRUB1	70	65.714	Equus_caballus
ENSPFOG00000009950	trub1	90	57.959	ENSEEUG00000013993	TRUB1	68	57.959	Erinaceus_europaeus
ENSPFOG00000009950	trub1	92	80.080	ENSELUG00000000502	trub1	88	80.080	Esox_lucius
ENSPFOG00000009950	trub1	90	66.531	ENSFCAG00000031927	TRUB1	70	66.531	Felis_catus
ENSPFOG00000009950	trub1	79	67.442	ENSFALG00000002232	TRUB1	83	67.442	Ficedula_albicollis
ENSPFOG00000009950	trub1	67	66.120	ENSFDAG00000008140	TRUB1	75	66.120	Fukomys_damarensis
ENSPFOG00000009950	trub1	99	86.347	ENSFHEG00000004016	trub1	93	86.347	Fundulus_heteroclitus
ENSPFOG00000009950	trub1	90	65.587	ENSGALG00000009091	TRUB1	87	65.587	Gallus_gallus
ENSPFOG00000009950	trub1	92	94.862	ENSGAFG00000009193	trub1	89	94.862	Gambusia_affinis
ENSPFOG00000009950	trub1	72	85.714	ENSGACG00000015387	trub1	96	85.714	Gasterosteus_aculeatus
ENSPFOG00000009950	trub1	90	69.796	ENSGAGG00000009758	TRUB1	70	69.796	Gopherus_agassizii
ENSPFOG00000009950	trub1	90	66.122	ENSGGOG00000004583	TRUB1	70	66.122	Gorilla_gorilla
ENSPFOG00000009950	trub1	95	83.398	ENSHBUG00000016787	trub1	93	83.398	Haplochromis_burtoni
ENSPFOG00000009950	trub1	90	64.490	ENSHGLG00000015314	TRUB1	70	64.490	Heterocephalus_glaber_female
ENSPFOG00000009950	trub1	67	65.574	ENSHGLG00100009183	TRUB1	77	65.574	Heterocephalus_glaber_male
ENSPFOG00000009950	trub1	99	79.121	ENSHCOG00000017877	trub1	99	79.121	Hippocampus_comes
ENSPFOG00000009950	trub1	90	78.138	ENSIPUG00000017559	trub1	87	78.138	Ictalurus_punctatus
ENSPFOG00000009950	trub1	86	68.085	ENSSTOG00000003641	TRUB1	71	68.085	Ictidomys_tridecemlineatus
ENSPFOG00000009950	trub1	90	65.306	ENSJJAG00000011800	Trub1	72	65.306	Jaculus_jaculus
ENSPFOG00000009950	trub1	100	79.927	ENSKMAG00000006232	trub1	99	79.927	Kryptolebias_marmoratus
ENSPFOG00000009950	trub1	98	79.851	ENSLBEG00000026722	trub1	94	79.851	Labrus_bergylta
ENSPFOG00000009950	trub1	90	73.984	ENSLACG00000014885	TRUB1	82	73.984	Latimeria_chalumnae
ENSPFOG00000009950	trub1	94	73.359	ENSLOCG00000012979	trub1	88	73.359	Lepisosteus_oculatus
ENSPFOG00000009950	trub1	91	65.873	ENSLAFG00000015452	TRUB1	72	65.873	Loxodonta_africana
ENSPFOG00000009950	trub1	90	66.122	ENSMFAG00000031767	TRUB1	70	66.122	Macaca_fascicularis
ENSPFOG00000009950	trub1	90	66.122	ENSMMUG00000001902	TRUB1	70	66.122	Macaca_mulatta
ENSPFOG00000009950	trub1	90	60.408	ENSMNEG00000044646	TRUB1	69	60.408	Macaca_nemestrina
ENSPFOG00000009950	trub1	90	66.122	ENSMLEG00000042655	TRUB1	70	66.122	Mandrillus_leucophaeus
ENSPFOG00000009950	trub1	95	83.784	ENSMZEG00005024095	trub1	93	83.784	Maylandia_zebra
ENSPFOG00000009950	trub1	90	66.397	ENSMGAG00000011135	TRUB1	85	66.397	Meleagris_gallopavo
ENSPFOG00000009950	trub1	87	63.025	ENSMAUG00000011101	Trub1	72	62.857	Mesocricetus_auratus
ENSPFOG00000009950	trub1	90	65.714	ENSMICG00000016324	TRUB1	70	65.714	Microcebus_murinus
ENSPFOG00000009950	trub1	88	66.109	ENSMOCG00000017759	Trub1	74	65.854	Microtus_ochrogaster
ENSPFOG00000009950	trub1	89	67.213	ENSMODG00000009676	TRUB1	71	65.625	Monodelphis_domestica
ENSPFOG00000009950	trub1	89	66.129	MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	Mus_caroli
ENSPFOG00000009950	trub1	89	65.323	ENSMUSG00000025086	Trub1	76	66.310	Mus_musculus
ENSPFOG00000009950	trub1	91	65.079	MGP_PahariEiJ_G0014588	Trub1	75	65.079	Mus_pahari
ENSPFOG00000009950	trub1	89	65.323	MGP_SPRETEiJ_G0024021	Trub1	76	66.310	Mus_spretus
ENSPFOG00000009950	trub1	90	66.531	ENSMPUG00000003556	TRUB1	70	66.531	Mustela_putorius_furo
ENSPFOG00000009950	trub1	90	65.306	ENSMLUG00000017686	TRUB1	72	65.306	Myotis_lucifugus
ENSPFOG00000009950	trub1	90	65.714	ENSNGAG00000018682	Trub1	70	65.714	Nannospalax_galili
ENSPFOG00000009950	trub1	93	83.137	ENSNBRG00000023393	trub1	91	83.137	Neolamprologus_brichardi
ENSPFOG00000009950	trub1	90	66.122	ENSNLEG00000016345	TRUB1	70	66.122	Nomascus_leucogenys
ENSPFOG00000009950	trub1	74	70.149	ENSMEUG00000006603	TRUB1	80	67.442	Notamacropus_eugenii
ENSPFOG00000009950	trub1	90	65.306	ENSOPRG00000009371	TRUB1	71	65.306	Ochotona_princeps
ENSPFOG00000009950	trub1	90	64.082	ENSODEG00000010854	TRUB1	70	64.082	Octodon_degus
ENSPFOG00000009950	trub1	94	82.422	ENSONIG00000007249	trub1	93	82.422	Oreochromis_niloticus
ENSPFOG00000009950	trub1	91	66.532	ENSOANG00000001556	TRUB1	83	66.135	Ornithorhynchus_anatinus
ENSPFOG00000009950	trub1	90	65.714	ENSOCUG00000009456	TRUB1	71	65.714	Oryctolagus_cuniculus
ENSPFOG00000009950	trub1	94	81.783	ENSORLG00000029719	trub1	96	80.524	Oryzias_latipes
ENSPFOG00000009950	trub1	94	81.395	ENSORLG00020016767	trub1	94	80.150	Oryzias_latipes_hni
ENSPFOG00000009950	trub1	94	80.620	ENSORLG00015014728	trub1	96	79.401	Oryzias_latipes_hsok
ENSPFOG00000009950	trub1	93	81.961	ENSOMEG00000014556	trub1	89	81.961	Oryzias_melastigma
ENSPFOG00000009950	trub1	90	66.122	ENSOGAG00000015895	TRUB1	70	66.122	Otolemur_garnettii
ENSPFOG00000009950	trub1	90	64.683	ENSOARG00000015591	TRUB1	72	64.683	Ovis_aries
ENSPFOG00000009950	trub1	90	66.122	ENSPPAG00000043645	TRUB1	70	66.122	Pan_paniscus
ENSPFOG00000009950	trub1	90	66.122	ENSPPRG00000007096	TRUB1	70	66.122	Panthera_pardus
ENSPFOG00000009950	trub1	90	66.122	ENSPTIG00000006378	TRUB1	70	66.122	Panthera_tigris_altaica
ENSPFOG00000009950	trub1	90	66.122	ENSPTRG00000002964	TRUB1	70	66.122	Pan_troglodytes
ENSPFOG00000009950	trub1	90	66.122	ENSPANG00000020712	TRUB1	70	66.122	Papio_anubis
ENSPFOG00000009950	trub1	63	77.778	ENSPKIG00000003852	trub1	74	77.778	Paramormyrops_kingsleyae
ENSPFOG00000009950	trub1	90	69.512	ENSPSIG00000012877	TRUB1	84	69.512	Pelodiscus_sinensis
ENSPFOG00000009950	trub1	93	77.255	ENSPMGG00000000075	trub1	92	77.255	Periophthalmus_magnuspinnatus
ENSPFOG00000009950	trub1	96	62.879	ENSPEMG00000011156	Trub1	78	62.879	Peromyscus_maniculatus_bairdii
ENSPFOG00000009950	trub1	89	67.213	ENSPCIG00000009729	TRUB1	70	65.116	Phascolarctos_cinereus
ENSPFOG00000009950	trub1	100	99.634	ENSPLAG00000013855	trub1	96	99.634	Poecilia_latipinna
ENSPFOG00000009950	trub1	100	99.634	ENSPMEG00000009064	trub1	99	99.634	Poecilia_mexicana
ENSPFOG00000009950	trub1	100	97.436	ENSPREG00000003343	trub1	99	97.436	Poecilia_reticulata
ENSPFOG00000009950	trub1	90	65.714	ENSPPYG00000002676	TRUB1	70	65.714	Pongo_abelii
ENSPFOG00000009950	trub1	91	59.921	ENSPCAG00000008427	TRUB1	72	59.921	Procavia_capensis
ENSPFOG00000009950	trub1	90	60.000	ENSPCOG00000024360	TRUB1	68	60.000	Propithecus_coquereli
ENSPFOG00000009950	trub1	74	68.812	ENSPVAG00000007575	TRUB1	77	68.812	Pteropus_vampyrus
ENSPFOG00000009950	trub1	95	83.784	ENSPNYG00000018614	trub1	93	83.784	Pundamilia_nyererei
ENSPFOG00000009950	trub1	100	63.736	ENSPNAG00000006881	trub1	87	63.736	Pygocentrus_nattereri
ENSPFOG00000009950	trub1	91	64.286	ENSRNOG00000017321	Trub1	74	64.286	Rattus_norvegicus
ENSPFOG00000009950	trub1	90	57.085	ENSRBIG00000033423	TRUB1	68	57.085	Rhinopithecus_bieti
ENSPFOG00000009950	trub1	90	66.122	ENSRROG00000033902	TRUB1	70	66.122	Rhinopithecus_roxellana
ENSPFOG00000009950	trub1	90	66.122	ENSSBOG00000024237	TRUB1	70	66.122	Saimiri_boliviensis_boliviensis
ENSPFOG00000009950	trub1	78	68.372	ENSSHAG00000009346	TRUB1	72	68.372	Sarcophilus_harrisii
ENSPFOG00000009950	trub1	95	76.154	ENSSFOG00015022124	trub1	89	76.154	Scleropages_formosus
ENSPFOG00000009950	trub1	96	82.576	ENSSMAG00000001020	trub1	94	82.576	Scophthalmus_maximus
ENSPFOG00000009950	trub1	97	80.755	ENSSDUG00000016414	trub1	95	83.396	Seriola_dumerili
ENSPFOG00000009950	trub1	97	80.377	ENSSLDG00000015486	trub1	95	83.019	Seriola_lalandi_dorsalis
ENSPFOG00000009950	trub1	94	66.406	ENSSPUG00000001642	TRUB1	88	66.406	Sphenodon_punctatus
ENSPFOG00000009950	trub1	100	80.657	ENSSPAG00000001217	trub1	95	83.019	Stegastes_partitus
ENSPFOG00000009950	trub1	91	65.476	ENSSSCG00000010653	TRUB1	73	65.476	Sus_scrofa
ENSPFOG00000009950	trub1	89	67.213	ENSTGUG00000010971	TRUB1	91	65.098	Taeniopygia_guttata
ENSPFOG00000009950	trub1	77	57.346	ENSTBEG00000002880	TRUB1	83	57.346	Tupaia_belangeri
ENSPFOG00000009950	trub1	74	68.317	ENSTTRG00000005767	TRUB1	77	68.317	Tursiops_truncatus
ENSPFOG00000009950	trub1	90	66.531	ENSUAMG00000024876	TRUB1	70	66.531	Ursus_americanus
ENSPFOG00000009950	trub1	90	66.531	ENSUMAG00000002411	TRUB1	72	68.306	Ursus_maritimus
ENSPFOG00000009950	trub1	90	66.531	ENSVPAG00000005507	TRUB1	70	66.531	Vicugna_pacos
ENSPFOG00000009950	trub1	90	66.531	ENSVVUG00000010085	TRUB1	59	66.531	Vulpes_vulpes
ENSPFOG00000009950	trub1	90	68.163	ENSXETG00000023828	trub1	88	68.163	Xenopus_tropicalis
ENSPFOG00000009950	trub1	92	96.400	ENSXCOG00000017847	trub1	88	96.400	Xiphophorus_couchianus
ENSPFOG00000009950	trub1	100	96.337	ENSXMAG00000014701	trub1	99	96.337	Xiphophorus_maculatus