EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000010191 (Gene tree)
Gene ID: 103150789
Gene Symbol: smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 15671 bases
Position: chrKI519873.1:114215-129885
Accession: 103150789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000010301	EST1	PF10374.9	5e-24	1	1
ENSPFOP00000010301	EST1_DNA_bind	PF10373.9	1.7e-42	1	1
ENSPFOP00000010301	PIN_4	PF13638.6	1.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000010316	-	5059	XM_007570533	ENSPFOP00000010301	1113 (aa)	XP_007570595	A0A087XWZ8

Gene Model

Click here to download ENSPFOG00000010191's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000010191's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000010191	smg5	99	62.266	ENSG00000198952	SMG5	50	60.405	Homo_sapiens
ENSPFOG00000010191	smg5	100	88.731	ENSAPOG00000019690	smg5	100	88.199	Acanthochromis_polyacanthus
ENSPFOG00000010191	smg5	98	61.060	ENSAMEG00000014458	SMG5	91	77.363	Ailuropoda_melanoleuca
ENSPFOG00000010191	smg5	100	81.088	ENSACIG00000001353	smg5	99	82.159	Amphilophus_citrinellus
ENSPFOG00000010191	smg5	100	88.691	ENSAOCG00000019483	smg5	100	88.780	Amphiprion_ocellaris
ENSPFOG00000010191	smg5	100	88.513	ENSAPEG00000022949	smg5	100	88.780	Amphiprion_percula
ENSPFOG00000010191	smg5	100	86.833	ENSATEG00000005348	smg5	100	86.643	Anabas_testudineus
ENSPFOG00000010191	smg5	98	62.646	ENSAPLG00000010263	SMG5	100	60.772	Anas_platyrhynchos
ENSPFOG00000010191	smg5	99	62.007	ENSANAG00000032899	SMG5	93	75.792	Aotus_nancymaae
ENSPFOG00000010191	smg5	100	87.211	ENSACLG00000009311	smg5	100	87.655	Astatotilapia_calliptera
ENSPFOG00000010191	smg5	100	78.335	ENSAMXG00000024616	smg5	100	78.501	Astyanax_mexicanus
ENSPFOG00000010191	smg5	90	50.608	ENSBTAG00000021747	-	92	50.608	Bos_taurus
ENSPFOG00000010191	smg5	99	62.545	ENSBTAG00000009435	SMG5	50	60.223	Bos_taurus
ENSPFOG00000010191	smg5	99	62.097	ENSCJAG00000005684	SMG5	50	61.152	Callithrix_jacchus
ENSPFOG00000010191	smg5	99	61.601	ENSCAFG00000016839	SMG5	93	75.744	Canis_familiaris
ENSPFOG00000010191	smg5	99	61.601	ENSCAFG00020006061	SMG5	93	75.744	Canis_lupus_dingo
ENSPFOG00000010191	smg5	99	62.366	ENSCHIG00000007709	SMG5	50	60.223	Capra_hircus
ENSPFOG00000010191	smg5	84	50.868	ENSCHIG00000006323	-	93	50.868	Capra_hircus
ENSPFOG00000010191	smg5	95	47.925	ENSCAPG00000003631	SMG5	92	55.762	Cavia_aperea
ENSPFOG00000010191	smg5	99	62.097	ENSCPOG00000015696	SMG5	50	61.524	Cavia_porcellus
ENSPFOG00000010191	smg5	99	62.007	ENSCCAG00000027409	SMG5	51	60.409	Cebus_capucinus
ENSPFOG00000010191	smg5	99	62.177	ENSCATG00000030539	SMG5	50	60.221	Cercocebus_atys
ENSPFOG00000010191	smg5	99	62.007	ENSCLAG00000003983	SMG5	50	61.338	Chinchilla_lanigera
ENSPFOG00000010191	smg5	99	62.177	ENSCSAG00000002120	SMG5	50	60.221	Chlorocebus_sabaeus
ENSPFOG00000010191	smg5	51	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSPFOG00000010191	smg5	72	38.060	ENSCING00000008706	-	83	38.060	Ciona_intestinalis
ENSPFOG00000010191	smg5	99	59.500	ENSCANG00000029208	SMG5	50	54.963	Colobus_angolensis_palliatus
ENSPFOG00000010191	smg5	100	83.081	ENSCSEG00000014220	smg5	100	83.066	Cynoglossus_semilaevis
ENSPFOG00000010191	smg5	100	76.523	ENSCVAG00000000529	smg5	99	75.986	Cyprinodon_variegatus
ENSPFOG00000010191	smg5	100	77.847	ENSDARG00000041481	smg5	100	77.984	Danio_rerio
ENSPFOG00000010191	smg5	78	39.791	ENSDNOG00000039862	-	95	39.005	Dasypus_novemcinctus
ENSPFOG00000010191	smg5	88	78.836	ENSDNOG00000000051	SMG5	93	69.074	Dasypus_novemcinctus
ENSPFOG00000010191	smg5	99	62.623	ENSDORG00000010382	Smg5	50	60.958	Dipodomys_ordii
ENSPFOG00000010191	smg5	76	84.466	ENSETEG00000010336	SMG5	63	84.466	Echinops_telfairi
ENSPFOG00000010191	smg5	64	53.695	ENSEBUG00000003739	smg5	88	53.465	Eptatretus_burgeri
ENSPFOG00000010191	smg5	99	62.567	ENSEASG00005019122	SMG5	50	60.967	Equus_asinus_asinus
ENSPFOG00000010191	smg5	99	62.567	ENSECAG00000001389	SMG5	93	70.814	Equus_caballus
ENSPFOG00000010191	smg5	66	79.155	ENSEEUG00000012690	SMG5	74	78.249	Erinaceus_europaeus
ENSPFOG00000010191	smg5	100	80.460	ENSELUG00000012585	smg5	100	79.101	Esox_lucius
ENSPFOG00000010191	smg5	99	62.084	ENSFCAG00000011783	SMG5	50	60.223	Felis_catus
ENSPFOG00000010191	smg5	60	61.640	ENSFALG00000001166	-	95	60.476	Ficedula_albicollis
ENSPFOG00000010191	smg5	98	82.208	ENSFHEG00000013939	smg5	94	93.968	Fundulus_heteroclitus
ENSPFOG00000010191	smg5	100	76.404	ENSGMOG00000007310	smg5	100	76.990	Gadus_morhua
ENSPFOG00000010191	smg5	99	63.661	ENSGALG00000029918	-	99	62.566	Gallus_gallus
ENSPFOG00000010191	smg5	93	96.486	ENSGAFG00000021691	smg5	99	96.486	Gambusia_affinis
ENSPFOG00000010191	smg5	100	84.588	ENSGACG00000013142	smg5	100	83.791	Gasterosteus_aculeatus
ENSPFOG00000010191	smg5	99	62.087	ENSGGOG00000010932	SMG5	50	60.221	Gorilla_gorilla
ENSPFOG00000010191	smg5	100	87.289	ENSHBUG00000008654	smg5	100	87.911	Haplochromis_burtoni
ENSPFOG00000010191	smg5	99	61.483	ENSHGLG00000019152	SMG5	50	59.410	Heterocephalus_glaber_female
ENSPFOG00000010191	smg5	90	77.162	ENSHCOG00000010229	smg5	94	82.651	Hippocampus_comes
ENSPFOG00000010191	smg5	100	77.293	ENSIPUG00000006624	Smg5	100	76.372	Ictalurus_punctatus
ENSPFOG00000010191	smg5	99	62.097	ENSSTOG00000001780	SMG5	50	60.967	Ictidomys_tridecemlineatus
ENSPFOG00000010191	smg5	100	89.324	ENSKMAG00000014586	smg5	100	89.591	Kryptolebias_marmoratus
ENSPFOG00000010191	smg5	100	87.077	ENSLBEG00000002145	smg5	100	87.255	Labrus_bergylta
ENSPFOG00000010191	smg5	99	57.080	ENSLACG00000010521	SMG5	99	57.689	Latimeria_chalumnae
ENSPFOG00000010191	smg5	100	68.267	ENSLOCG00000008380	smg5	99	72.458	Lepisosteus_oculatus
ENSPFOG00000010191	smg5	99	61.704	ENSLAFG00000006241	SMG5	50	60.037	Loxodonta_africana
ENSPFOG00000010191	smg5	99	62.177	ENSMFAG00000045357	SMG5	50	60.221	Macaca_fascicularis
ENSPFOG00000010191	smg5	92	78.824	ENSMMUG00000000090	SMG5	94	75.964	Macaca_mulatta
ENSPFOG00000010191	smg5	99	62.087	ENSMNEG00000044425	SMG5	50	60.037	Macaca_nemestrina
ENSPFOG00000010191	smg5	99	57.156	ENSMLEG00000041192	SMG5	93	66.516	Mandrillus_leucophaeus
ENSPFOG00000010191	smg5	100	86.554	ENSMAMG00000010683	smg5	100	86.643	Mastacembelus_armatus
ENSPFOG00000010191	smg5	100	77.788	ENSMZEG00005015815	smg5	99	78.234	Maylandia_zebra
ENSPFOG00000010191	smg5	65	74.185	ENSMZEG00005016543	smg5	100	74.185	Maylandia_zebra
ENSPFOG00000010191	smg5	99	62.264	ENSMICG00000002257	SMG5	50	60.223	Microcebus_murinus
ENSPFOG00000010191	smg5	100	82.875	ENSMMOG00000017199	smg5	100	82.609	Mola_mola
ENSPFOG00000010191	smg5	71	35.309	ENSMODG00000004532	-	85	34.815	Monodelphis_domestica
ENSPFOG00000010191	smg5	71	35.310	ENSMODG00000004735	-	89	35.310	Monodelphis_domestica
ENSPFOG00000010191	smg5	71	33.846	ENSMODG00000010675	-	88	34.103	Monodelphis_domestica
ENSPFOG00000010191	smg5	72	35.467	ENSMODG00000004511	-	76	35.467	Monodelphis_domestica
ENSPFOG00000010191	smg5	100	85.116	ENSMALG00000010375	smg5	100	84.938	Monopterus_albus
ENSPFOG00000010191	smg5	99	62.410	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSPFOG00000010191	smg5	99	62.177	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSPFOG00000010191	smg5	99	62.230	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSPFOG00000010191	smg5	99	62.106	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSPFOG00000010191	smg5	94	60.436	ENSMPUG00000004546	SMG5	93	73.740	Mustela_putorius_furo
ENSPFOG00000010191	smg5	99	62.724	ENSMLUG00000008518	SMG5	50	60.781	Myotis_lucifugus
ENSPFOG00000010191	smg5	78	49.877	ENSNGAG00000012101	-	92	49.507	Nannospalax_galili
ENSPFOG00000010191	smg5	97	74.747	ENSNBRG00000004332	smg5	98	75.184	Neolamprologus_brichardi
ENSPFOG00000010191	smg5	99	62.444	ENSNLEG00000012439	SMG5	50	60.405	Nomascus_leucogenys
ENSPFOG00000010191	smg5	99	60.842	ENSMEUG00000012834	SMG5	50	58.135	Notamacropus_eugenii
ENSPFOG00000010191	smg5	99	62.791	ENSOPRG00000009152	SMG5	50	59.851	Ochotona_princeps
ENSPFOG00000010191	smg5	99	61.973	ENSODEG00000012237	SMG5	50	61.152	Octodon_degus
ENSPFOG00000010191	smg5	100	87.111	ENSONIG00000008632	smg5	100	87.022	Oreochromis_niloticus
ENSPFOG00000010191	smg5	75	46.020	ENSOCUG00000023338	-	91	46.020	Oryctolagus_cuniculus
ENSPFOG00000010191	smg5	100	84.821	ENSORLG00000016239	smg5	100	85.142	Oryzias_latipes
ENSPFOG00000010191	smg5	100	84.821	ENSORLG00020013127	smg5	100	85.040	Oryzias_latipes_hni
ENSPFOG00000010191	smg5	100	84.911	ENSORLG00015019014	smg5	100	85.307	Oryzias_latipes_hsok
ENSPFOG00000010191	smg5	84	84.591	ENSOMEG00000021330	smg5	93	85.749	Oryzias_melastigma
ENSPFOG00000010191	smg5	99	61.111	ENSOGAG00000004966	SMG5	50	60.037	Otolemur_garnettii
ENSPFOG00000010191	smg5	85	51.090	ENSOARG00000011963	-	93	51.090	Ovis_aries
ENSPFOG00000010191	smg5	99	62.186	ENSOARG00000005778	SMG5	50	60.223	Ovis_aries
ENSPFOG00000010191	smg5	99	62.177	ENSPPAG00000011996	SMG5	50	60.405	Pan_paniscus
ENSPFOG00000010191	smg5	98	60.018	ENSPPRG00000011901	SMG5	93	76.134	Panthera_pardus
ENSPFOG00000010191	smg5	97	58.287	ENSPTIG00000007892	SMG5	92	73.206	Panthera_tigris_altaica
ENSPFOG00000010191	smg5	86	78.371	ENSPTRG00000049282	-	83	77.465	Pan_troglodytes
ENSPFOG00000010191	smg5	99	62.177	ENSPTRG00000023925	SMG5	50	60.405	Pan_troglodytes
ENSPFOG00000010191	smg5	99	62.177	ENSPANG00000011201	SMG5	50	60.221	Papio_anubis
ENSPFOG00000010191	smg5	100	76.344	ENSPKIG00000009402	smg5	100	75.627	Paramormyrops_kingsleyae
ENSPFOG00000010191	smg5	100	72.103	ENSPMGG00000010465	smg5	100	71.825	Periophthalmus_magnuspinnatus
ENSPFOG00000010191	smg5	89	59.864	ENSPMAG00000000410	smg5	91	62.830	Petromyzon_marinus
ENSPFOG00000010191	smg5	99	61.746	ENSPCIG00000018938	SMG5	50	60.695	Phascolarctos_cinereus
ENSPFOG00000010191	smg5	100	99.461	ENSPLAG00000009332	smg5	100	99.461	Poecilia_latipinna
ENSPFOG00000010191	smg5	100	99.730	ENSPMEG00000014105	smg5	100	99.730	Poecilia_mexicana
ENSPFOG00000010191	smg5	100	98.293	ENSPREG00000017713	smg5	100	98.293	Poecilia_reticulata
ENSPFOG00000010191	smg5	99	62.266	ENSPPYG00000000723	SMG5	50	60.405	Pongo_abelii
ENSPFOG00000010191	smg5	77	78.889	ENSPCAG00000008412	SMG5	74	78.889	Procavia_capensis
ENSPFOG00000010191	smg5	99	60.846	ENSPCOG00000004741	SMG5	51	60.595	Propithecus_coquereli
ENSPFOG00000010191	smg5	99	52.778	ENSPVAG00000016748	SMG5	93	63.122	Pteropus_vampyrus
ENSPFOG00000010191	smg5	100	86.980	ENSPNYG00000013397	smg5	100	87.511	Pundamilia_nyererei
ENSPFOG00000010191	smg5	100	78.910	ENSPNAG00000028363	smg5	100	78.431	Pygocentrus_nattereri
ENSPFOG00000010191	smg5	99	62.266	ENSRBIG00000027428	SMG5	50	60.221	Rhinopithecus_bieti
ENSPFOG00000010191	smg5	99	62.177	ENSRROG00000030035	SMG5	50	60.037	Rhinopithecus_roxellana
ENSPFOG00000010191	smg5	99	62.097	ENSSBOG00000033339	SMG5	50	60.595	Saimiri_boliviensis_boliviensis
ENSPFOG00000010191	smg5	71	41.076	ENSSHAG00000009572	-	80	40.831	Sarcophilus_harrisii
ENSPFOG00000010191	smg5	70	35.821	ENSSHAG00000000561	-	92	34.803	Sarcophilus_harrisii
ENSPFOG00000010191	smg5	98	60.763	ENSSHAG00000014163	SMG5	52	59.783	Sarcophilus_harrisii
ENSPFOG00000010191	smg5	52	35.872	ENSSHAG00000000935	-	82	35.872	Sarcophilus_harrisii
ENSPFOG00000010191	smg5	100	76.821	ENSSFOG00015024175	smg5	100	76.288	Scleropages_formosus
ENSPFOG00000010191	smg5	100	86.441	ENSSMAG00000013059	smg5	100	86.364	Scophthalmus_maximus
ENSPFOG00000010191	smg5	100	87.434	ENSSDUG00000007122	smg5	100	86.814	Seriola_dumerili
ENSPFOG00000010191	smg5	100	87.655	ENSSLDG00000011418	smg5	100	87.655	Seriola_lalandi_dorsalis
ENSPFOG00000010191	smg5	91	55.281	ENSSARG00000012484	SMG5	92	61.959	Sorex_araneus
ENSPFOG00000010191	smg5	94	61.445	ENSSPUG00000002260	SMG5	55	59.206	Sphenodon_punctatus
ENSPFOG00000010191	smg5	100	88.652	ENSSPAG00000014266	smg5	100	88.741	Stegastes_partitus
ENSPFOG00000010191	smg5	57	47.152	ENSSSCG00000039308	-	51	50.558	Sus_scrofa
ENSPFOG00000010191	smg5	99	62.724	ENSSSCG00000006490	-	93	70.588	Sus_scrofa
ENSPFOG00000010191	smg5	99	63.003	ENSTGUG00000003748	-	50	60.584	Taeniopygia_guttata
ENSPFOG00000010191	smg5	100	79.451	ENSTRUG00000012580	smg5	100	79.344	Takifugu_rubripes
ENSPFOG00000010191	smg5	100	79.329	ENSTNIG00000010303	smg5	100	78.817	Tetraodon_nigroviridis
ENSPFOG00000010191	smg5	52	83.744	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSPFOG00000010191	smg5	99	61.386	ENSUAMG00000013721	SMG5	93	75.459	Ursus_americanus
ENSPFOG00000010191	smg5	92	74.515	ENSUMAG00000018041	SMG5	95	73.210	Ursus_maritimus
ENSPFOG00000010191	smg5	92	70.792	ENSVPAG00000009446	SMG5	93	66.429	Vicugna_pacos
ENSPFOG00000010191	smg5	99	61.960	ENSVVUG00000005887	SMG5	91	77.488	Vulpes_vulpes
ENSPFOG00000010191	smg5	91	97.838	ENSXCOG00000004379	smg5	99	98.901	Xiphophorus_couchianus
ENSPFOG00000010191	smg5	100	97.305	ENSXMAG00000013499	smg5	100	97.305	Xiphophorus_maculatus