EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000010418 (Gene tree)
Gene ID: 103147269
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specific factor 3
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 11223 bases
Position: chrKI519788.1:216590-227812
Accession: 103147269
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000010545	CPSF73-100_C	PF11718.8	7.3e-55	1	1
ENSPFOP00000010545	Beta-Casp	PF10996.8	7.5e-34	1	1
ENSPFOP00000010545	Lactamase_B	PF00753.27	9e-19	1	1
ENSPFOP00000010545	RMMBL	PF07521.12	2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000010560	-	5227	-	ENSPFOP00000010545	690 (aa)	XP_007565587	A0A087XXP2

Gene Model

Click here to download ENSPFOG00000010418's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000010418's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000010418	-	100	86.957	ENSPFOG00000015922	cpsf3	100	86.957
ENSPFOG00000010418	-	69	37.882	ENSPFOG00000008512	ints11	81	37.882

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000010418	-	98	87.776	ENSG00000119203	CPSF3	100	99.265	Homo_sapiens
ENSPFOG00000010418	-	75	97.093	ENSAPOG00000012241	CPSF3	92	97.093	Acanthochromis_polyacanthus
ENSPFOG00000010418	-	100	88.406	ENSAPOG00000022087	cpsf3	100	88.406	Acanthochromis_polyacanthus
ENSPFOG00000010418	-	98	88.218	ENSAMEG00000008493	CPSF3	99	88.218	Ailuropoda_melanoleuca
ENSPFOG00000010418	-	91	93.344	ENSACIG00000023663	CPSF3	100	86.397	Amphilophus_citrinellus
ENSPFOG00000010418	-	91	84.603	ENSACIG00000009846	cpsf3	100	78.582	Amphilophus_citrinellus
ENSPFOG00000010418	-	100	95.217	ENSAOCG00000010077	CPSF3	100	95.217	Amphiprion_ocellaris
ENSPFOG00000010418	-	100	88.261	ENSAOCG00000022056	cpsf3	100	89.490	Amphiprion_ocellaris
ENSPFOG00000010418	-	100	95.217	ENSAPEG00000021167	CPSF3	100	95.217	Amphiprion_percula
ENSPFOG00000010418	-	100	88.406	ENSAPEG00000019526	cpsf3	99	89.498	Amphiprion_percula
ENSPFOG00000010418	-	99	87.936	ENSATEG00000003959	cpsf3	99	87.936	Anabas_testudineus
ENSPFOG00000010418	-	100	87.536	ENSATEG00000014525	CPSF3	100	87.536	Anabas_testudineus
ENSPFOG00000010418	-	97	87.612	ENSAPLG00000006941	CPSF3	98	87.612	Anas_platyrhynchos
ENSPFOG00000010418	-	92	85.086	ENSACAG00000001759	CPSF3	99	85.086	Anolis_carolinensis
ENSPFOG00000010418	-	98	82.327	ENSANAG00000031254	CPSF3	99	82.583	Aotus_nancymaae
ENSPFOG00000010418	-	97	88.288	ENSACLG00000014484	cpsf3	99	88.288	Astatotilapia_calliptera
ENSPFOG00000010418	-	91	93.661	ENSACLG00000018846	CPSF3	100	86.541	Astatotilapia_calliptera
ENSPFOG00000010418	-	100	88.696	ENSAMXG00000004786	cpsf3	100	88.696	Astyanax_mexicanus
ENSPFOG00000010418	-	98	88.071	ENSBTAG00000019735	CPSF3	99	88.071	Bos_taurus
ENSPFOG00000010418	-	90	57.571	WBGene00013460	cpsf-3	89	57.571	Caenorhabditis_elegans
ENSPFOG00000010418	-	98	87.776	ENSCJAG00000006276	CPSF3	99	87.776	Callithrix_jacchus
ENSPFOG00000010418	-	98	88.218	ENSCAFG00000003375	CPSF3	95	88.218	Canis_familiaris
ENSPFOG00000010418	-	89	90.422	ENSCAFG00020026799	CPSF3	99	90.422	Canis_lupus_dingo
ENSPFOG00000010418	-	98	88.071	ENSCHIG00000013973	CPSF3	99	88.071	Capra_hircus
ENSPFOG00000010418	-	98	87.776	ENSTSYG00000002967	CPSF3	99	87.776	Carlito_syrichta
ENSPFOG00000010418	-	96	87.669	ENSCAPG00000013851	CPSF3	99	87.669	Cavia_aperea
ENSPFOG00000010418	-	98	87.923	ENSCPOG00000011299	CPSF3	99	87.923	Cavia_porcellus
ENSPFOG00000010418	-	98	87.629	ENSCCAG00000036730	CPSF3	99	87.629	Cebus_capucinus
ENSPFOG00000010418	-	98	86.009	ENSCATG00000014770	CPSF3	99	93.080	Cercocebus_atys
ENSPFOG00000010418	-	98	88.071	ENSCLAG00000002727	CPSF3	99	88.071	Chinchilla_lanigera
ENSPFOG00000010418	-	98	79.823	ENSCSAG00000007125	CPSF3	99	79.823	Chlorocebus_sabaeus
ENSPFOG00000010418	-	85	100.000	ENSCHOG00000000180	CPSF3	85	62.676	Choloepus_hoffmanni
ENSPFOG00000010418	-	99	87.663	ENSCPBG00000014074	CPSF3	99	87.663	Chrysemys_picta_bellii
ENSPFOG00000010418	-	98	67.889	ENSCING00000007214	-	97	67.889	Ciona_intestinalis
ENSPFOG00000010418	-	98	78.331	ENSCANG00000034435	CPSF3	99	78.331	Colobus_angolensis_palliatus
ENSPFOG00000010418	-	98	87.923	ENSCGRG00001013134	Cpsf3	99	87.923	Cricetulus_griseus_chok1gshd
ENSPFOG00000010418	-	98	87.923	ENSCGRG00000018319	Cpsf3	99	87.923	Cricetulus_griseus_crigri
ENSPFOG00000010418	-	100	91.606	ENSCSEG00000002021	CPSF3	100	92.272	Cynoglossus_semilaevis
ENSPFOG00000010418	-	100	96.522	ENSCVAG00000015067	CPSF3	100	96.522	Cyprinodon_variegatus
ENSPFOG00000010418	-	100	89.420	ENSDARG00000027649	cpsf3	100	89.420	Danio_rerio
ENSPFOG00000010418	-	98	87.059	ENSDNOG00000008940	CPSF3	95	87.059	Dasypus_novemcinctus
ENSPFOG00000010418	-	94	88.889	ENSDORG00000014263	Cpsf3	99	88.889	Dipodomys_ordii
ENSPFOG00000010418	-	99	65.747	FBgn0261065	Cpsf73	99	65.747	Drosophila_melanogaster
ENSPFOG00000010418	-	94	77.160	ENSETEG00000003893	CPSF3	99	77.160	Echinops_telfairi
ENSPFOG00000010418	-	99	76.023	ENSEBUG00000009018	cpsf3	99	76.371	Eptatretus_burgeri
ENSPFOG00000010418	-	98	88.218	ENSEASG00005003970	CPSF3	99	88.218	Equus_asinus_asinus
ENSPFOG00000010418	-	98	88.218	ENSECAG00000019911	CPSF3	96	92.736	Equus_caballus
ENSPFOG00000010418	-	98	72.754	ENSEEUG00000015422	CPSF3	99	72.754	Erinaceus_europaeus
ENSPFOG00000010418	-	99	90.566	ENSELUG00000013775	cpsf3	99	90.566	Esox_lucius
ENSPFOG00000010418	-	98	88.071	ENSFCAG00000007852	CPSF3	99	88.071	Felis_catus
ENSPFOG00000010418	-	93	87.442	ENSFALG00000006572	CPSF3	99	87.442	Ficedula_albicollis
ENSPFOG00000010418	-	98	87.187	ENSFDAG00000006317	CPSF3	99	87.187	Fukomys_damarensis
ENSPFOG00000010418	-	100	86.957	ENSFHEG00000014774	cpsf3	100	86.957	Fundulus_heteroclitus
ENSPFOG00000010418	-	59	80.244	ENSFHEG00000012186	CPSF3	100	80.244	Fundulus_heteroclitus
ENSPFOG00000010418	-	100	88.261	ENSGMOG00000003157	cpsf3	100	88.261	Gadus_morhua
ENSPFOG00000010418	-	99	87.336	ENSGALG00000016424	CPSF3	99	87.336	Gallus_gallus
ENSPFOG00000010418	-	100	99.275	ENSGAFG00000008016	CPSF3	100	99.275	Gambusia_affinis
ENSPFOG00000010418	-	91	85.215	ENSGAFG00000019449	cpsf3	100	79.130	Gambusia_affinis
ENSPFOG00000010418	-	68	83.726	ENSGAGG00000025583	CPSF3	93	83.726	Gopherus_agassizii
ENSPFOG00000010418	-	98	85.591	ENSGGOG00000001757	CPSF3	91	98.065	Gorilla_gorilla
ENSPFOG00000010418	-	100	87.971	ENSHBUG00000001188	cpsf3	100	87.971	Haplochromis_burtoni
ENSPFOG00000010418	-	59	88.395	ENSHBUG00000014332	CPSF3	100	88.395	Haplochromis_burtoni
ENSPFOG00000010418	-	98	87.776	ENSHGLG00000000666	CPSF3	98	87.776	Heterocephalus_glaber_female
ENSPFOG00000010418	-	98	87.776	ENSHGLG00100007765	CPSF3	98	87.776	Heterocephalus_glaber_male
ENSPFOG00000010418	-	99	87.355	ENSHCOG00000007251	cpsf3	99	87.355	Hippocampus_comes
ENSPFOG00000010418	-	99	93.023	ENSHCOG00000015957	CPSF3	99	93.023	Hippocampus_comes
ENSPFOG00000010418	-	100	87.826	ENSIPUG00000023488	cpsf3	100	87.826	Ictalurus_punctatus
ENSPFOG00000010418	-	98	87.776	ENSSTOG00000004476	CPSF3	99	87.776	Ictidomys_tridecemlineatus
ENSPFOG00000010418	-	98	87.334	ENSJJAG00000023415	Cpsf3	99	87.334	Jaculus_jaculus
ENSPFOG00000010418	-	100	86.667	ENSKMAG00000002806	cpsf3	100	86.667	Kryptolebias_marmoratus
ENSPFOG00000010418	-	100	95.217	ENSKMAG00000007317	CPSF3	100	95.217	Kryptolebias_marmoratus
ENSPFOG00000010418	-	54	82.258	ENSLBEG00000015018	-	99	82.258	Labrus_bergylta
ENSPFOG00000010418	-	95	95.434	ENSLBEG00000013492	CPSF3	99	95.434	Labrus_bergylta
ENSPFOG00000010418	-	99	80.842	ENSLBEG00000020569	cpsf3	96	80.842	Labrus_bergylta
ENSPFOG00000010418	-	100	81.042	ENSLACG00000008308	CPSF3	100	81.042	Latimeria_chalumnae
ENSPFOG00000010418	-	100	89.755	ENSLOCG00000016823	cpsf3	100	89.755	Lepisosteus_oculatus
ENSPFOG00000010418	-	98	86.726	ENSLAFG00000009467	CPSF3	99	86.726	Loxodonta_africana
ENSPFOG00000010418	-	98	87.629	ENSMFAG00000001339	CPSF3	94	95.010	Macaca_fascicularis
ENSPFOG00000010418	-	93	86.977	ENSMMUG00000018038	CPSF3	92	95.010	Macaca_mulatta
ENSPFOG00000010418	-	90	98.000	ENSMNEG00000039447	CPSF3	99	98.000	Macaca_nemestrina
ENSPFOG00000010418	-	98	87.776	ENSMLEG00000026825	CPSF3	92	97.854	Mandrillus_leucophaeus
ENSPFOG00000010418	-	91	92.405	ENSMAMG00000008835	CPSF3	100	85.694	Mastacembelus_armatus
ENSPFOG00000010418	-	100	86.957	ENSMAMG00000003076	cpsf3	100	86.957	Mastacembelus_armatus
ENSPFOG00000010418	-	100	94.783	ENSMZEG00005006258	CPSF3	100	94.783	Maylandia_zebra
ENSPFOG00000010418	-	100	87.971	ENSMZEG00005014358	cpsf3	100	87.971	Maylandia_zebra
ENSPFOG00000010418	-	96	87.519	ENSMGAG00000013995	CPSF3	99	87.519	Meleagris_gallopavo
ENSPFOG00000010418	-	54	78.610	ENSMAUG00000000166	Cpsf3	99	78.610	Mesocricetus_auratus
ENSPFOG00000010418	-	98	83.038	ENSMICG00000002363	CPSF3	99	83.038	Microcebus_murinus
ENSPFOG00000010418	-	98	84.389	ENSMOCG00000020067	Cpsf3	99	84.389	Microtus_ochrogaster
ENSPFOG00000010418	-	93	82.791	ENSMMOG00000018212	CPSF3	98	82.791	Mola_mola
ENSPFOG00000010418	-	80	71.726	ENSMMOG00000011923	CPSF3	85	78.571	Mola_mola
ENSPFOG00000010418	-	98	86.735	ENSMODG00000014703	CPSF3	99	86.735	Monodelphis_domestica
ENSPFOG00000010418	-	92	90.297	ENSMALG00000011474	CPSF3	99	90.297	Monopterus_albus
ENSPFOG00000010418	-	100	88.261	ENSMALG00000016416	cpsf3	100	88.261	Monopterus_albus
ENSPFOG00000010418	-	98	88.218	MGP_CAROLIEiJ_G0017640	Cpsf3	99	88.218	Mus_caroli
ENSPFOG00000010418	-	98	88.218	ENSMUSG00000054309	Cpsf3	96	97.881	Mus_musculus
ENSPFOG00000010418	-	98	88.071	MGP_PahariEiJ_G0029397	Cpsf3	99	88.071	Mus_pahari
ENSPFOG00000010418	-	98	88.218	MGP_SPRETEiJ_G0018481	Cpsf3	99	88.218	Mus_spretus
ENSPFOG00000010418	-	98	88.235	ENSMPUG00000013213	CPSF3	99	88.235	Mustela_putorius_furo
ENSPFOG00000010418	-	98	87.941	ENSMLUG00000010636	CPSF3	99	87.941	Myotis_lucifugus
ENSPFOG00000010418	-	98	87.776	ENSNGAG00000019836	Cpsf3	99	87.776	Nannospalax_galili
ENSPFOG00000010418	-	91	93.661	ENSNBRG00000010525	CPSF3	100	86.541	Neolamprologus_brichardi
ENSPFOG00000010418	-	100	87.681	ENSNBRG00000004770	cpsf3	100	87.681	Neolamprologus_brichardi
ENSPFOG00000010418	-	98	87.629	ENSNLEG00000013359	CPSF3	91	97.854	Nomascus_leucogenys
ENSPFOG00000010418	-	98	57.143	ENSMEUG00000013117	-	99	57.143	Notamacropus_eugenii
ENSPFOG00000010418	-	98	79.265	ENSOPRG00000008902	CPSF3	99	79.265	Ochotona_princeps
ENSPFOG00000010418	-	98	88.071	ENSODEG00000003129	CPSF3	99	88.071	Octodon_degus
ENSPFOG00000010418	-	100	88.261	ENSONIG00000018812	cpsf3	100	88.261	Oreochromis_niloticus
ENSPFOG00000010418	-	81	85.765	ENSOANG00000008577	CPSF3	99	85.765	Ornithorhynchus_anatinus
ENSPFOG00000010418	-	98	87.923	ENSOCUG00000003728	CPSF3	99	87.923	Oryctolagus_cuniculus
ENSPFOG00000010418	-	100	87.101	ENSORLG00000018854	cpsf3	100	87.101	Oryzias_latipes
ENSPFOG00000010418	-	100	86.957	ENSORLG00020013331	cpsf3	100	86.957	Oryzias_latipes_hni
ENSPFOG00000010418	-	100	87.101	ENSORLG00015011017	cpsf3	100	87.101	Oryzias_latipes_hsok
ENSPFOG00000010418	-	100	87.246	ENSOMEG00000010647	cpsf3	96	87.246	Oryzias_melastigma
ENSPFOG00000010418	-	98	77.761	ENSOGAG00000001680	CPSF3	99	77.761	Otolemur_garnettii
ENSPFOG00000010418	-	98	88.071	ENSOARG00000015073	CPSF3	99	88.071	Ovis_aries
ENSPFOG00000010418	-	98	87.776	ENSPPAG00000042457	CPSF3	91	97.854	Pan_paniscus
ENSPFOG00000010418	-	98	88.071	ENSPPRG00000016790	CPSF3	99	88.071	Panthera_pardus
ENSPFOG00000010418	-	98	88.053	ENSPTIG00000003920	CPSF3	99	88.053	Panthera_tigris_altaica
ENSPFOG00000010418	-	98	87.776	ENSPTRG00000011638	CPSF3	91	98.065	Pan_troglodytes
ENSPFOG00000010418	-	98	87.629	ENSPANG00000016798	CPSF3	94	95.010	Papio_anubis
ENSPFOG00000010418	-	100	91.014	ENSPKIG00000023646	cpsf3	100	91.022	Paramormyrops_kingsleyae
ENSPFOG00000010418	-	98	87.206	ENSPSIG00000016144	CPSF3	99	87.206	Pelodiscus_sinensis
ENSPFOG00000010418	-	59	88.642	ENSPMGG00000015311	CPSF3	100	88.642	Periophthalmus_magnuspinnatus
ENSPFOG00000010418	-	82	88.007	ENSPMGG00000006141	-	99	80.732	Periophthalmus_magnuspinnatus
ENSPFOG00000010418	-	98	88.365	ENSPEMG00000017668	Cpsf3	99	88.365	Peromyscus_maniculatus_bairdii
ENSPFOG00000010418	-	79	89.541	ENSPMAG00000004841	cpsf3	100	89.541	Petromyzon_marinus
ENSPFOG00000010418	-	96	87.820	ENSPCIG00000009823	CPSF3	98	88.190	Phascolarctos_cinereus
ENSPFOG00000010418	-	100	86.957	ENSPLAG00000000882	cpsf3	100	86.957	Poecilia_latipinna
ENSPFOG00000010418	-	59	100.000	ENSPLAG00000021300	-	100	100.000	Poecilia_latipinna
ENSPFOG00000010418	-	100	87.101	ENSPMEG00000018309	cpsf3	100	87.101	Poecilia_mexicana
ENSPFOG00000010418	-	100	90.580	ENSPREG00000004482	CPSF3	100	90.580	Poecilia_reticulata
ENSPFOG00000010418	-	91	85.056	ENSPREG00000014875	cpsf3	100	78.986	Poecilia_reticulata
ENSPFOG00000010418	-	98	83.505	ENSPPYG00000012666	CPSF3	99	83.505	Pongo_abelii
ENSPFOG00000010418	-	84	66.102	ENSPCAG00000015042	CPSF3	89	66.102	Procavia_capensis
ENSPFOG00000010418	-	86	90.323	ENSPCOG00000023016	CPSF3	97	90.323	Propithecus_coquereli
ENSPFOG00000010418	-	98	87.941	ENSPVAG00000005324	CPSF3	99	87.941	Pteropus_vampyrus
ENSPFOG00000010418	-	100	87.971	ENSPNYG00000004405	cpsf3	100	87.971	Pundamilia_nyererei
ENSPFOG00000010418	-	78	95.756	ENSPNYG00000021047	CPSF3	91	87.375	Pundamilia_nyererei
ENSPFOG00000010418	-	100	88.696	ENSPNAG00000023060	cpsf3	100	88.696	Pygocentrus_nattereri
ENSPFOG00000010418	-	99	87.959	ENSRNOG00000052418	Cpsf3	99	87.959	Rattus_norvegicus
ENSPFOG00000010418	-	98	82.769	ENSRBIG00000041615	CPSF3	99	83.566	Rhinopithecus_bieti
ENSPFOG00000010418	-	98	87.776	ENSRROG00000033792	CPSF3	99	87.776	Rhinopithecus_roxellana
ENSPFOG00000010418	-	84	43.636	YLR277C	YSH1	85	43.636	Saccharomyces_cerevisiae
ENSPFOG00000010418	-	96	84.006	ENSSBOG00000027263	CPSF3	97	84.006	Saimiri_boliviensis_boliviensis
ENSPFOG00000010418	-	98	87.923	ENSSHAG00000007024	CPSF3	99	87.923	Sarcophilus_harrisii
ENSPFOG00000010418	-	100	90.435	ENSSFOG00015002108	cpsf3	100	90.536	Scleropages_formosus
ENSPFOG00000010418	-	95	93.151	ENSSMAG00000020534	CPSF3	97	93.151	Scophthalmus_maximus
ENSPFOG00000010418	-	100	94.638	ENSSDUG00000018498	CPSF3	100	94.638	Seriola_dumerili
ENSPFOG00000010418	-	100	88.261	ENSSDUG00000002828	cpsf3	97	88.261	Seriola_dumerili
ENSPFOG00000010418	-	100	88.406	ENSSLDG00000008469	cpsf3	99	87.112	Seriola_lalandi_dorsalis
ENSPFOG00000010418	-	100	94.638	ENSSLDG00000005234	CPSF3	100	94.638	Seriola_lalandi_dorsalis
ENSPFOG00000010418	-	89	84.181	ENSSARG00000005186	CPSF3	89	84.181	Sorex_araneus
ENSPFOG00000010418	-	96	85.800	ENSSPUG00000015525	CPSF3	97	85.800	Sphenodon_punctatus
ENSPFOG00000010418	-	100	95.072	ENSSPAG00000002906	CPSF3	100	95.072	Stegastes_partitus
ENSPFOG00000010418	-	100	89.130	ENSSPAG00000018579	cpsf3	100	89.130	Stegastes_partitus
ENSPFOG00000010418	-	98	88.218	ENSSSCG00000020799	CPSF3	99	88.218	Sus_scrofa
ENSPFOG00000010418	-	99	87.537	ENSTGUG00000013016	CPSF3	99	87.537	Taeniopygia_guttata
ENSPFOG00000010418	-	59	77.833	ENSTRUG00000013905	CPSF3	100	77.833	Takifugu_rubripes
ENSPFOG00000010418	-	99	86.792	ENSTRUG00000007030	cpsf3	98	86.792	Takifugu_rubripes
ENSPFOG00000010418	-	84	92.265	ENSTBEG00000002707	CPSF3	84	92.265	Tupaia_belangeri
ENSPFOG00000010418	-	86	74.939	ENSTTRG00000000861	CPSF3	87	74.939	Tursiops_truncatus
ENSPFOG00000010418	-	95	88.855	ENSUAMG00000007535	CPSF3	94	88.855	Ursus_americanus
ENSPFOG00000010418	-	93	87.597	ENSUMAG00000003676	CPSF3	99	87.597	Ursus_maritimus
ENSPFOG00000010418	-	92	87.697	ENSVPAG00000008041	CPSF3	100	87.697	Vicugna_pacos
ENSPFOG00000010418	-	98	88.218	ENSVVUG00000002194	CPSF3	99	88.218	Vulpes_vulpes
ENSPFOG00000010418	-	99	86.087	ENSXETG00000008263	cpsf3	99	86.087	Xenopus_tropicalis
ENSPFOG00000010418	-	54	98.118	ENSXCOG00000000957	-	87	98.118	Xiphophorus_couchianus
ENSPFOG00000010418	-	100	87.246	ENSXCOG00000019695	cpsf3	100	87.246	Xiphophorus_couchianus
ENSPFOG00000010418	-	100	99.130	ENSXMAG00000027291	CPSF3	100	99.130	Xiphophorus_maculatus
ENSPFOG00000010418	-	100	87.101	ENSXMAG00000009784	cpsf3	100	87.101	Xiphophorus_maculatus