EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000011130 (Gene tree)
Gene ID: 103142506
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 4667 bases
Position: chrKI519707.1:1976515-1981181
Accession: 103142506
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000011133	HVSL	PF09749.9	2.7e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000011149	-	1079	-	ENSPFOP00000011133	278 (aa)	XP_007558663	A0A087XZD0

Gene Model

Click here to download ENSPFOG00000011130's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000011130's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000011130	usb1	82	51.754	ENSG00000103005	USB1	98	53.110	Homo_sapiens
ENSPFOG00000011130	usb1	99	72.183	ENSAPOG00000011942	usb1	100	72.183	Acanthochromis_polyacanthus
ENSPFOG00000011130	usb1	84	52.137	ENSAMEG00000017205	USB1	98	49.638	Ailuropoda_melanoleuca
ENSPFOG00000011130	usb1	85	73.109	ENSACIG00000012234	usb1	100	67.986	Amphilophus_citrinellus
ENSPFOG00000011130	usb1	99	74.205	ENSAOCG00000014831	usb1	99	74.205	Amphiprion_ocellaris
ENSPFOG00000011130	usb1	99	73.498	ENSAPEG00000000296	usb1	99	73.498	Amphiprion_percula
ENSPFOG00000011130	usb1	99	72.598	ENSATEG00000009348	usb1	99	72.598	Anabas_testudineus
ENSPFOG00000011130	usb1	81	55.310	ENSAPLG00000002756	USB1	100	55.310	Anas_platyrhynchos
ENSPFOG00000011130	usb1	82	51.965	ENSACAG00000015481	USB1	100	51.965	Anolis_carolinensis
ENSPFOG00000011130	usb1	82	51.316	ENSANAG00000035640	USB1	98	46.931	Aotus_nancymaae
ENSPFOG00000011130	usb1	91	71.937	ENSACLG00000020586	usb1	100	69.825	Astatotilapia_calliptera
ENSPFOG00000011130	usb1	81	65.778	ENSAMXG00000040146	usb1	95	56.897	Astyanax_mexicanus
ENSPFOG00000011130	usb1	99	48.188	ENSBTAG00000015758	USB1	98	48.188	Bos_taurus
ENSPFOG00000011130	usb1	82	52.193	ENSCJAG00000011733	USB1	98	48.188	Callithrix_jacchus
ENSPFOG00000011130	usb1	99	47.273	ENSCAFG00000008556	USB1	71	48.000	Canis_familiaris
ENSPFOG00000011130	usb1	99	48.364	ENSCAFG00020009263	USB1	98	48.364	Canis_lupus_dingo
ENSPFOG00000011130	usb1	99	47.653	ENSCHIG00000024290	USB1	98	47.653	Capra_hircus
ENSPFOG00000011130	usb1	82	51.754	ENSTSYG00000006997	USB1	98	48.188	Carlito_syrichta
ENSPFOG00000011130	usb1	81	42.222	ENSCAPG00000009057	USB1	96	42.222	Cavia_aperea
ENSPFOG00000011130	usb1	99	47.826	ENSCPOG00000014325	USB1	98	47.826	Cavia_porcellus
ENSPFOG00000011130	usb1	82	51.754	ENSCCAG00000022132	USB1	98	47.292	Cebus_capucinus
ENSPFOG00000011130	usb1	82	52.193	ENSCATG00000032174	USB1	98	48.014	Cercocebus_atys
ENSPFOG00000011130	usb1	62	51.445	ENSCLAG00000007363	USB1	87	53.595	Chinchilla_lanigera
ENSPFOG00000011130	usb1	82	52.193	ENSCSAG00000004783	USB1	98	48.551	Chlorocebus_sabaeus
ENSPFOG00000011130	usb1	82	55.702	ENSCPBG00000026943	USB1	98	51.254	Chrysemys_picta_bellii
ENSPFOG00000011130	usb1	81	34.310	ENSCING00000011490	-	95	32.567	Ciona_intestinalis
ENSPFOG00000011130	usb1	81	33.473	ENSCSAVG00000000894	-	91	30.216	Ciona_savignyi
ENSPFOG00000011130	usb1	81	52.423	ENSCANG00000037135	USB1	98	48.727	Colobus_angolensis_palliatus
ENSPFOG00000011130	usb1	99	50.000	ENSCGRG00001011243	USB1	98	50.000	Cricetulus_griseus_chok1gshd
ENSPFOG00000011130	usb1	99	50.000	ENSCGRG00000013252	USB1	98	50.000	Cricetulus_griseus_crigri
ENSPFOG00000011130	usb1	99	67.509	ENSCSEG00000013881	usb1	99	67.509	Cynoglossus_semilaevis
ENSPFOG00000011130	usb1	81	83.700	ENSCVAG00000009252	usb1	97	83.700	Cyprinodon_variegatus
ENSPFOG00000011130	usb1	85	58.824	ENSDARG00000003841	usb1	100	55.160	Danio_rerio
ENSPFOG00000011130	usb1	99	47.101	ENSDORG00000001888	Usb1	98	48.375	Dipodomys_ordii
ENSPFOG00000011130	usb1	74	44.019	FBgn0037713	CG16790	79	42.308	Drosophila_melanogaster
ENSPFOG00000011130	usb1	99	41.877	ENSETEG00000019682	USB1	98	41.877	Echinops_telfairi
ENSPFOG00000011130	usb1	96	41.481	ENSEBUG00000005889	usb1	89	41.538	Eptatretus_burgeri
ENSPFOG00000011130	usb1	99	47.826	ENSEASG00005005484	USB1	98	47.826	Equus_asinus_asinus
ENSPFOG00000011130	usb1	99	47.464	ENSECAG00000019493	USB1	90	47.464	Equus_caballus
ENSPFOG00000011130	usb1	62	48.555	ENSEEUG00000000154	USB1	58	49.673	Erinaceus_europaeus
ENSPFOG00000011130	usb1	91	61.660	ENSELUG00000010974	usb1	100	60.289	Esox_lucius
ENSPFOG00000011130	usb1	84	50.427	ENSFCAG00000002693	USB1	98	47.500	Felis_catus
ENSPFOG00000011130	usb1	81	54.185	ENSFALG00000006876	USB1	98	49.275	Ficedula_albicollis
ENSPFOG00000011130	usb1	99	46.377	ENSFDAG00000010052	USB1	98	46.377	Fukomys_damarensis
ENSPFOG00000011130	usb1	88	83.197	ENSFHEG00000012334	usb1	98	83.197	Fundulus_heteroclitus
ENSPFOG00000011130	usb1	81	70.982	ENSGMOG00000004228	usb1	100	70.982	Gadus_morhua
ENSPFOG00000011130	usb1	90	50.996	ENSGALG00000035604	USB1	98	48.921	Gallus_gallus
ENSPFOG00000011130	usb1	100	95.683	ENSGAFG00000021890	usb1	100	95.683	Gambusia_affinis
ENSPFOG00000011130	usb1	99	69.314	ENSGACG00000003257	usb1	99	69.314	Gasterosteus_aculeatus
ENSPFOG00000011130	usb1	99	52.536	ENSGAGG00000022572	USB1	98	52.536	Gopherus_agassizii
ENSPFOG00000011130	usb1	82	52.193	ENSGGOG00000017147	USB1	98	48.551	Gorilla_gorilla
ENSPFOG00000011130	usb1	91	71.937	ENSHBUG00000009823	usb1	100	70.070	Haplochromis_burtoni
ENSPFOG00000011130	usb1	99	46.739	ENSHGLG00000016078	USB1	96	46.739	Heterocephalus_glaber_female
ENSPFOG00000011130	usb1	99	46.739	ENSHGLG00100005562	USB1	96	46.739	Heterocephalus_glaber_male
ENSPFOG00000011130	usb1	78	73.394	ENSHCOG00000015633	usb1	99	65.091	Hippocampus_comes
ENSPFOG00000011130	usb1	99	54.795	ENSIPUG00000008601	usb1	100	55.363	Ictalurus_punctatus
ENSPFOG00000011130	usb1	99	48.014	ENSSTOG00000007548	USB1	98	49.097	Ictidomys_tridecemlineatus
ENSPFOG00000011130	usb1	99	48.913	ENSJJAG00000021859	Usb1	98	48.913	Jaculus_jaculus
ENSPFOG00000011130	usb1	94	76.245	ENSKMAG00000007200	usb1	99	74.476	Kryptolebias_marmoratus
ENSPFOG00000011130	usb1	89	68.000	ENSLBEG00000008452	usb1	86	66.182	Labrus_bergylta
ENSPFOG00000011130	usb1	93	49.042	ENSLACG00000000105	USB1	98	48.592	Latimeria_chalumnae
ENSPFOG00000011130	usb1	99	48.718	ENSLOCG00000000465	usb1	100	50.169	Lepisosteus_oculatus
ENSPFOG00000011130	usb1	99	40.283	ENSLAFG00000002267	USB1	98	39.024	Loxodonta_africana
ENSPFOG00000011130	usb1	82	52.193	ENSMFAG00000003926	USB1	98	48.014	Macaca_fascicularis
ENSPFOG00000011130	usb1	82	52.193	ENSMMUG00000022669	USB1	98	48.014	Macaca_mulatta
ENSPFOG00000011130	usb1	82	51.754	ENSMNEG00000042487	USB1	98	47.653	Macaca_nemestrina
ENSPFOG00000011130	usb1	82	52.193	ENSMLEG00000028756	USB1	98	48.014	Mandrillus_leucophaeus
ENSPFOG00000011130	usb1	99	74.552	ENSMAMG00000015092	usb1	99	74.552	Mastacembelus_armatus
ENSPFOG00000011130	usb1	91	71.937	ENSMZEG00005010008	usb1	100	70.070	Maylandia_zebra
ENSPFOG00000011130	usb1	99	48.913	ENSMAUG00000007832	Usb1	98	48.913	Mesocricetus_auratus
ENSPFOG00000011130	usb1	82	52.193	ENSMICG00000004900	USB1	98	48.014	Microcebus_murinus
ENSPFOG00000011130	usb1	99	50.000	ENSMOCG00000022647	Usb1	98	50.000	Microtus_ochrogaster
ENSPFOG00000011130	usb1	81	75.893	ENSMMOG00000000490	usb1	99	67.391	Mola_mola
ENSPFOG00000011130	usb1	99	47.687	ENSMODG00000014067	USB1	99	49.822	Monodelphis_domestica
ENSPFOG00000011130	usb1	90	73.092	ENSMALG00000005930	usb1	100	69.611	Monopterus_albus
ENSPFOG00000011130	usb1	99	49.097	MGP_CAROLIEiJ_G0031421	Usb1	98	49.097	Mus_caroli
ENSPFOG00000011130	usb1	99	49.097	ENSMUSG00000031792	Usb1	98	48.561	Mus_musculus
ENSPFOG00000011130	usb1	82	53.509	MGP_PahariEiJ_G0023019	Usb1	96	51.786	Mus_pahari
ENSPFOG00000011130	usb1	99	48.551	MGP_SPRETEiJ_G0032540	Usb1	98	47.143	Mus_spretus
ENSPFOG00000011130	usb1	84	50.420	ENSMPUG00000004684	USB1	94	47.143	Mustela_putorius_furo
ENSPFOG00000011130	usb1	82	53.070	ENSMLUG00000007400	USB1	98	53.070	Myotis_lucifugus
ENSPFOG00000011130	usb1	99	48.421	ENSNGAG00000009703	Usb1	98	50.000	Nannospalax_galili
ENSPFOG00000011130	usb1	91	65.613	ENSNBRG00000008747	usb1	100	73.023	Neolamprologus_brichardi
ENSPFOG00000011130	usb1	75	52.632	ENSNLEG00000003340	USB1	96	48.638	Nomascus_leucogenys
ENSPFOG00000011130	usb1	99	48.375	ENSODEG00000016214	USB1	98	48.375	Octodon_degus
ENSPFOG00000011130	usb1	99	70.922	ENSONIG00000011063	usb1	100	70.922	Oreochromis_niloticus
ENSPFOG00000011130	usb1	81	51.556	ENSOANG00000012118	USB1	94	51.556	Ornithorhynchus_anatinus
ENSPFOG00000011130	usb1	87	76.349	ENSORLG00000012479	usb1	100	71.841	Oryzias_latipes
ENSPFOG00000011130	usb1	87	75.104	ENSORLG00020018671	usb1	100	69.314	Oryzias_latipes_hni
ENSPFOG00000011130	usb1	87	76.349	ENSORLG00015009679	usb1	100	71.480	Oryzias_latipes_hsok
ENSPFOG00000011130	usb1	99	71.119	ENSOMEG00000012930	usb1	100	71.942	Oryzias_melastigma
ENSPFOG00000011130	usb1	85	47.881	ENSOGAG00000003273	USB1	98	45.290	Otolemur_garnettii
ENSPFOG00000011130	usb1	86	50.628	ENSOARG00000001107	USB1	91	50.628	Ovis_aries
ENSPFOG00000011130	usb1	82	51.754	ENSPPAG00000042137	USB1	98	48.188	Pan_paniscus
ENSPFOG00000011130	usb1	84	50.000	ENSPPRG00000024797	USB1	98	47.312	Panthera_pardus
ENSPFOG00000011130	usb1	84	49.573	ENSPTIG00000007506	USB1	98	46.595	Panthera_tigris_altaica
ENSPFOG00000011130	usb1	82	48.684	ENSPTRG00000008172	USB1	98	53.589	Pan_troglodytes
ENSPFOG00000011130	usb1	82	52.193	ENSPANG00000025138	USB1	98	48.014	Papio_anubis
ENSPFOG00000011130	usb1	83	64.655	ENSPKIG00000015109	usb1	99	55.892	Paramormyrops_kingsleyae
ENSPFOG00000011130	usb1	81	45.815	ENSPSIG00000004305	USB1	100	45.815	Pelodiscus_sinensis
ENSPFOG00000011130	usb1	80	67.265	ENSPMGG00000017725	usb1	98	59.273	Periophthalmus_magnuspinnatus
ENSPFOG00000011130	usb1	99	48.551	ENSPEMG00000016183	Usb1	98	48.551	Peromyscus_maniculatus_bairdii
ENSPFOG00000011130	usb1	78	52.968	ENSPMAG00000000462	usb1	92	52.968	Petromyzon_marinus
ENSPFOG00000011130	usb1	100	98.201	ENSPLAG00000009820	usb1	100	98.201	Poecilia_latipinna
ENSPFOG00000011130	usb1	100	99.281	ENSPMEG00000006402	usb1	100	99.281	Poecilia_mexicana
ENSPFOG00000011130	usb1	88	97.131	ENSPREG00000001047	usb1	99	97.131	Poecilia_reticulata
ENSPFOG00000011130	usb1	77	48.837	ENSPPYG00000007401	USB1	98	45.627	Pongo_abelii
ENSPFOG00000011130	usb1	82	51.316	ENSPCOG00000022612	USB1	98	47.653	Propithecus_coquereli
ENSPFOG00000011130	usb1	99	46.931	ENSPVAG00000004613	USB1	98	46.931	Pteropus_vampyrus
ENSPFOG00000011130	usb1	99	68.551	ENSPNYG00000022262	usb1	100	69.718	Pundamilia_nyererei
ENSPFOG00000011130	usb1	91	60.392	ENSPNAG00000011736	usb1	100	56.610	Pygocentrus_nattereri
ENSPFOG00000011130	usb1	99	48.561	ENSRNOG00000013216	Usb1	98	48.561	Rattus_norvegicus
ENSPFOG00000011130	usb1	82	49.123	ENSRBIG00000044466	USB1	98	53.589	Rhinopithecus_bieti
ENSPFOG00000011130	usb1	82	52.193	ENSRROG00000029211	USB1	98	48.913	Rhinopithecus_roxellana
ENSPFOG00000011130	usb1	82	52.193	ENSSBOG00000029362	USB1	98	47.292	Saimiri_boliviensis_boliviensis
ENSPFOG00000011130	usb1	78	50.917	ENSSHAG00000006993	USB1	90	51.316	Sarcophilus_harrisii
ENSPFOG00000011130	usb1	82	65.236	ENSSFOG00015023663	usb1	91	58.305	Scleropages_formosus
ENSPFOG00000011130	usb1	99	67.905	ENSSMAG00000015834	usb1	100	67.905	Scophthalmus_maximus
ENSPFOG00000011130	usb1	81	79.556	ENSSDUG00000002949	usb1	100	70.036	Seriola_dumerili
ENSPFOG00000011130	usb1	99	72.954	ENSSLDG00000014174	usb1	100	74.021	Seriola_lalandi_dorsalis
ENSPFOG00000011130	usb1	77	55.349	ENSSPUG00000006741	USB1	100	55.349	Sphenodon_punctatus
ENSPFOG00000011130	usb1	99	72.535	ENSSPAG00000007484	usb1	99	72.535	Stegastes_partitus
ENSPFOG00000011130	usb1	86	50.628	ENSSSCG00000002807	USB1	98	48.736	Sus_scrofa
ENSPFOG00000011130	usb1	76	56.398	ENSTGUG00000004792	USB1	83	56.398	Taeniopygia_guttata
ENSPFOG00000011130	usb1	99	68.116	ENSTRUG00000021069	usb1	99	68.116	Takifugu_rubripes
ENSPFOG00000011130	usb1	99	58.696	ENSTNIG00000000626	usb1	98	58.633	Tetraodon_nigroviridis
ENSPFOG00000011130	usb1	81	37.778	ENSTBEG00000001507	USB1	97	37.778	Tupaia_belangeri
ENSPFOG00000011130	usb1	84	52.137	ENSUAMG00000016823	USB1	98	48.399	Ursus_americanus
ENSPFOG00000011130	usb1	77	53.488	ENSUMAG00000021369	USB1	100	53.488	Ursus_maritimus
ENSPFOG00000011130	usb1	99	46.909	ENSVVUG00000023700	USB1	87	51.982	Vulpes_vulpes
ENSPFOG00000011130	usb1	76	55.399	ENSXETG00000013795	usb1	88	55.251	Xenopus_tropicalis
ENSPFOG00000011130	usb1	94	95.769	ENSXMAG00000024687	usb1	81	95.604	Xiphophorus_maculatus