EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPFOG00000011408 (Gene tree)
Gene ID: 103141003
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Plus strand
Length: 18437 bases
Position: chrKI519688.1:2055483-2073919
Accession: 103141003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000025569	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSPFOP00000011436	MMR_HSR1	PF01926.23	1.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000011452	-	4479	XM_007556394	ENSPFOP00000011436	505 (aa)	XP_007556456	A0A087Y083
ENSPFOT00000030743	-	1455	-	ENSPFOP00000025569	485 (aa)	-	A0A096M2C8

Gene Model

Click here to download ENSPFOG00000011408's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000011408's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000011408	srl	79	32.468	ENSPFOG00000010935	ehd3	69	32.746
ENSPFOG00000011408	srl	87	33.491	ENSPFOG00000011756	ehd2b	74	33.491
ENSPFOG00000011408	srl	96	73.640	ENSPFOG00000000786	SRL	77	73.222
ENSPFOG00000011408	srl	84	31.941	ENSPFOG00000018511	ehd4	70	31.941
ENSPFOG00000011408	srl	85	31.159	ENSPFOG00000012774	-	71	31.159
ENSPFOG00000011408	srl	86	31.415	ENSPFOG00000010613	ehd1a	72	31.415

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000011408	srl	94	80.482	ENSG00000185739	SRL	99	81.179	Homo_sapiens
ENSPFOG00000011408	srl	94	75.824	ENSAPOG00000012432	SRL	99	75.824	Acanthochromis_polyacanthus
ENSPFOG00000011408	srl	98	90.377	ENSAPOG00000018093	srl	100	92.754	Acanthochromis_polyacanthus
ENSPFOG00000011408	srl	96	79.701	ENSAMEG00000010862	SRL	51	79.741	Ailuropoda_melanoleuca
ENSPFOG00000011408	srl	95	92.842	ENSACIG00000015799	srl	99	92.857	Amphilophus_citrinellus
ENSPFOG00000011408	srl	95	74.348	ENSACIG00000015419	SRL	99	74.348	Amphilophus_citrinellus
ENSPFOG00000011408	srl	94	76.316	ENSAOCG00000017049	SRL	97	76.535	Amphiprion_ocellaris
ENSPFOG00000011408	srl	92	93.483	ENSAOCG00000007574	srl	100	93.498	Amphiprion_ocellaris
ENSPFOG00000011408	srl	94	73.187	ENSAPEG00000006533	SRL	96	73.684	Amphiprion_percula
ENSPFOG00000011408	srl	98	93.096	ENSAPEG00000006911	srl	100	95.445	Amphiprion_percula
ENSPFOG00000011408	srl	98	93.711	ENSATEG00000024315	srl	100	95.238	Anabas_testudineus
ENSPFOG00000011408	srl	96	74.274	ENSATEG00000009643	SRL	52	75.855	Anabas_testudineus
ENSPFOG00000011408	srl	93	85.398	ENSACAG00000016380	SRL	90	81.098	Anolis_carolinensis
ENSPFOG00000011408	srl	95	73.263	ENSACLG00000024674	SRL	54	78.500	Astatotilapia_calliptera
ENSPFOG00000011408	srl	98	93.291	ENSACLG00000027685	srl	100	95.031	Astatotilapia_calliptera
ENSPFOG00000011408	srl	89	77.083	ENSAMXG00000038693	SRL	100	73.333	Astyanax_mexicanus
ENSPFOG00000011408	srl	100	88.317	ENSAMXG00000018789	srl	97	88.317	Astyanax_mexicanus
ENSPFOG00000011408	srl	94	80.921	ENSBTAG00000001078	SRL	57	80.000	Bos_taurus
ENSPFOG00000011408	srl	93	81.015	ENSCJAG00000019750	SRL	100	77.938	Callithrix_jacchus
ENSPFOG00000011408	srl	97	78.723	ENSCAFG00000019233	SRL	85	79.149	Canis_familiaris
ENSPFOG00000011408	srl	95	79.957	ENSCAFG00020025024	SRL	56	79.957	Canis_lupus_dingo
ENSPFOG00000011408	srl	96	79.915	ENSCHIG00000017927	SRL	57	80.000	Capra_hircus
ENSPFOG00000011408	srl	97	79.412	ENSTSYG00000007919	SRL	99	82.086	Carlito_syrichta
ENSPFOG00000011408	srl	94	80.921	ENSCPOG00000012643	SRL	100	78.306	Cavia_porcellus
ENSPFOG00000011408	srl	93	75.938	ENSCCAG00000032646	SRL	100	84.433	Cebus_capucinus
ENSPFOG00000011408	srl	94	80.482	ENSCATG00000032227	-	100	77.938	Cercocebus_atys
ENSPFOG00000011408	srl	94	81.140	ENSCLAG00000016242	SRL	100	78.512	Chinchilla_lanigera
ENSPFOG00000011408	srl	79	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSPFOG00000011408	srl	92	86.269	ENSCPBG00000026371	SRL	99	80.538	Chrysemys_picta_bellii
ENSPFOG00000011408	srl	93	58.315	ENSCING00000005231	-	98	58.315	Ciona_intestinalis
ENSPFOG00000011408	srl	94	80.482	ENSCANG00000035872	SRL	99	81.179	Colobus_angolensis_palliatus
ENSPFOG00000011408	srl	97	80.000	ENSCGRG00001016630	Srl	100	79.132	Cricetulus_griseus_chok1gshd
ENSPFOG00000011408	srl	97	80.000	ENSCGRG00000005458	Srl	100	79.132	Cricetulus_griseus_crigri
ENSPFOG00000011408	srl	98	92.453	ENSCSEG00000016151	srl	100	94.398	Cynoglossus_semilaevis
ENSPFOG00000011408	srl	98	72.025	ENSCSEG00000011866	SRL	94	72.234	Cynoglossus_semilaevis
ENSPFOG00000011408	srl	95	97.180	ENSCVAG00000003513	srl	100	96.888	Cyprinodon_variegatus
ENSPFOG00000011408	srl	95	74.630	ENSCVAG00000022465	SRL	61	74.841	Cyprinodon_variegatus
ENSPFOG00000011408	srl	78	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSPFOG00000011408	srl	98	89.958	ENSDARG00000104587	srl	100	90.476	Danio_rerio
ENSPFOG00000011408	srl	94	80.702	ENSDNOG00000011643	SRL	53	80.702	Dasypus_novemcinctus
ENSPFOG00000011408	srl	96	80.258	ENSDORG00000014807	Srl	100	78.926	Dipodomys_ordii
ENSPFOG00000011408	srl	76	66.043	ENSEBUG00000015937	srl	94	66.043	Eptatretus_burgeri
ENSPFOG00000011408	srl	94	80.921	ENSEASG00005000942	SRL	55	80.000	Equus_asinus_asinus
ENSPFOG00000011408	srl	97	78.992	ENSECAG00000024219	SRL	99	78.306	Equus_caballus
ENSPFOG00000011408	srl	98	86.128	ENSELUG00000015616	srl	100	86.653	Esox_lucius
ENSPFOG00000011408	srl	93	80.795	ENSFCAG00000022075	SRL	100	77.732	Felis_catus
ENSPFOG00000011408	srl	96	80.258	ENSFALG00000004328	SRL	63	81.637	Ficedula_albicollis
ENSPFOG00000011408	srl	94	81.798	ENSFDAG00000006199	SRL	100	79.339	Fukomys_damarensis
ENSPFOG00000011408	srl	94	75.877	ENSFHEG00000011854	SRL	99	76.096	Fundulus_heteroclitus
ENSPFOG00000011408	srl	96	96.983	ENSFHEG00000011239	srl	100	97.510	Fundulus_heteroclitus
ENSPFOG00000011408	srl	94	90.969	ENSGMOG00000014954	srl	100	90.969	Gadus_morhua
ENSPFOG00000011408	srl	95	82.013	ENSGALG00000038884	SRL	99	79.089	Gallus_gallus
ENSPFOG00000011408	srl	95	76.957	ENSGAFG00000016984	SRL	99	76.957	Gambusia_affinis
ENSPFOG00000011408	srl	98	97.275	ENSGAFG00000000010	srl	100	99.793	Gambusia_affinis
ENSPFOG00000011408	srl	94	94.505	ENSGACG00000011332	srl	100	94.505	Gasterosteus_aculeatus
ENSPFOG00000011408	srl	94	80.482	ENSGGOG00000011312	-	100	77.938	Gorilla_gorilla
ENSPFOG00000011408	srl	98	93.291	ENSHBUG00000007581	srl	100	95.031	Haplochromis_burtoni
ENSPFOG00000011408	srl	96	73.695	ENSHBUG00000015710	SRL	58	73.695	Haplochromis_burtoni
ENSPFOG00000011408	srl	94	81.579	ENSHGLG00000015271	SRL	100	78.926	Heterocephalus_glaber_female
ENSPFOG00000011408	srl	94	81.579	ENSHGLG00100019378	SRL	100	78.926	Heterocephalus_glaber_male
ENSPFOG00000011408	srl	94	74.090	ENSHCOG00000001012	SRL	50	74.090	Hippocampus_comes
ENSPFOG00000011408	srl	98	92.484	ENSHCOG00000008687	srl	99	93.661	Hippocampus_comes
ENSPFOG00000011408	srl	98	89.144	ENSIPUG00000012513	srl	100	90.269	Ictalurus_punctatus
ENSPFOG00000011408	srl	92	69.196	ENSIPUG00000011609	SRL	95	69.196	Ictalurus_punctatus
ENSPFOG00000011408	srl	96	80.258	ENSSTOG00000021151	-	100	78.512	Ictidomys_tridecemlineatus
ENSPFOG00000011408	srl	98	79.332	ENSJJAG00000016400	Srl	100	79.545	Jaculus_jaculus
ENSPFOG00000011408	srl	96	93.590	ENSKMAG00000014115	srl	95	95.763	Kryptolebias_marmoratus
ENSPFOG00000011408	srl	93	75.938	ENSKMAG00000019537	SRL	100	75.938	Kryptolebias_marmoratus
ENSPFOG00000011408	srl	96	73.093	ENSLBEG00000013811	SRL	99	73.305	Labrus_bergylta
ENSPFOG00000011408	srl	97	92.827	ENSLBEG00000026643	srl	100	93.789	Labrus_bergylta
ENSPFOG00000011408	srl	98	82.255	ENSLACG00000002825	SRL	100	82.609	Latimeria_chalumnae
ENSPFOG00000011408	srl	97	84.989	ENSLOCG00000002644	srl	98	84.989	Lepisosteus_oculatus
ENSPFOG00000011408	srl	96	79.104	ENSLAFG00000006329	SRL	52	79.104	Loxodonta_africana
ENSPFOG00000011408	srl	91	81.179	ENSMFAG00000037383	SRL	99	81.179	Macaca_fascicularis
ENSPFOG00000011408	srl	96	79.149	ENSMNEG00000019236	-	97	79.149	Macaca_nemestrina
ENSPFOG00000011408	srl	94	73.465	ENSMLEG00000032156	SRL	100	71.340	Mandrillus_leucophaeus
ENSPFOG00000011408	srl	93	74.678	ENSMAMG00000013756	SRL	53	74.678	Mastacembelus_armatus
ENSPFOG00000011408	srl	98	90.397	ENSMAMG00000023322	srl	99	90.397	Mastacembelus_armatus
ENSPFOG00000011408	srl	98	93.291	ENSMZEG00005004548	srl	100	95.031	Maylandia_zebra
ENSPFOG00000011408	srl	96	73.486	ENSMZEG00005004010	SRL	59	73.486	Maylandia_zebra
ENSPFOG00000011408	srl	98	77.572	ENSMGAG00000009342	SRL	96	82.097	Meleagris_gallopavo
ENSPFOG00000011408	srl	94	81.498	ENSMICG00000032307	SRL	100	78.557	Microcebus_murinus
ENSPFOG00000011408	srl	98	78.870	ENSMOCG00000008208	Srl	100	78.306	Microtus_ochrogaster
ENSPFOG00000011408	srl	93	75.328	ENSMMOG00000021572	SRL	99	75.328	Mola_mola
ENSPFOG00000011408	srl	95	91.540	ENSMMOG00000013970	srl	100	91.558	Mola_mola
ENSPFOG00000011408	srl	94	81.798	ENSMODG00000016380	-	50	81.798	Monodelphis_domestica
ENSPFOG00000011408	srl	96	91.379	ENSMALG00000005039	srl	100	91.494	Monopterus_albus
ENSPFOG00000011408	srl	89	76.566	ENSMALG00000000670	SRL	98	76.566	Monopterus_albus
ENSPFOG00000011408	srl	96	81.330	MGP_CAROLIEiJ_G0020400	Srl	100	80.165	Mus_caroli
ENSPFOG00000011408	srl	96	81.330	ENSMUSG00000022519	Srl	100	80.165	Mus_musculus
ENSPFOG00000011408	srl	96	81.330	MGP_SPRETEiJ_G0021294	Srl	100	80.165	Mus_spretus
ENSPFOG00000011408	srl	94	80.482	ENSMPUG00000015025	SRL	54	80.482	Mustela_putorius_furo
ENSPFOG00000011408	srl	98	79.704	ENSMLUG00000030733	SRL	58	79.704	Myotis_lucifugus
ENSPFOG00000011408	srl	94	82.237	ENSNGAG00000019741	Srl	100	79.545	Nannospalax_galili
ENSPFOG00000011408	srl	96	72.860	ENSNBRG00000002422	SRL	58	72.860	Neolamprologus_brichardi
ENSPFOG00000011408	srl	97	92.324	ENSNBRG00000023775	srl	100	92.754	Neolamprologus_brichardi
ENSPFOG00000011408	srl	94	74.781	ENSNLEG00000029051	SRL	100	72.371	Nomascus_leucogenys
ENSPFOG00000011408	srl	94	75.219	ENSOPRG00000000477	-	53	74.249	Ochotona_princeps
ENSPFOG00000011408	srl	94	81.579	ENSODEG00000013256	SRL	100	78.719	Octodon_degus
ENSPFOG00000011408	srl	98	93.291	ENSONIG00000005192	srl	100	95.031	Oreochromis_niloticus
ENSPFOG00000011408	srl	93	80.574	ENSOCUG00000025140	SRL	50	78.891	Oryctolagus_cuniculus
ENSPFOG00000011408	srl	94	73.904	ENSORLG00000015064	SRL	97	74.066	Oryzias_latipes
ENSPFOG00000011408	srl	99	94.779	ENSORLG00000008291	srl	100	96.410	Oryzias_latipes
ENSPFOG00000011408	srl	100	94.653	ENSORLG00020019784	srl	90	94.653	Oryzias_latipes_hni
ENSPFOG00000011408	srl	94	74.123	ENSORLG00020018173	SRL	97	74.286	Oryzias_latipes_hni
ENSPFOG00000011408	srl	94	74.123	ENSORLG00015019063	SRL	97	74.286	Oryzias_latipes_hsok
ENSPFOG00000011408	srl	99	94.779	ENSORLG00015009342	srl	100	94.779	Oryzias_latipes_hsok
ENSPFOG00000011408	srl	94	72.708	ENSOMEG00000005682	SRL	53	73.134	Oryzias_melastigma
ENSPFOG00000011408	srl	96	95.259	ENSOMEG00000010006	srl	100	95.643	Oryzias_melastigma
ENSPFOG00000011408	srl	94	80.702	ENSOGAG00000029266	SRL	54	80.702	Otolemur_garnettii
ENSPFOG00000011408	srl	96	79.915	ENSOARG00000003074	SRL	56	80.921	Ovis_aries
ENSPFOG00000011408	srl	96	78.846	ENSPPAG00000024919	-	99	81.179	Pan_paniscus
ENSPFOG00000011408	srl	93	80.795	ENSPPRG00000010274	SRL	99	81.179	Panthera_pardus
ENSPFOG00000011408	srl	93	80.795	ENSPTIG00000015162	SRL	99	81.179	Panthera_tigris_altaica
ENSPFOG00000011408	srl	96	78.846	ENSPTRG00000007712	SRL	99	81.179	Pan_troglodytes
ENSPFOG00000011408	srl	96	79.362	ENSPANG00000013804	SRL	98	79.362	Papio_anubis
ENSPFOG00000011408	srl	97	89.706	ENSPKIG00000006405	srl	100	89.300	Paramormyrops_kingsleyae
ENSPFOG00000011408	srl	99	75.050	ENSPKIG00000024974	SRL	97	75.050	Paramormyrops_kingsleyae
ENSPFOG00000011408	srl	94	81.140	ENSPSIG00000008586	SRL	50	81.140	Pelodiscus_sinensis
ENSPFOG00000011408	srl	94	74.505	ENSPMGG00000023505	-	100	74.505	Periophthalmus_magnuspinnatus
ENSPFOG00000011408	srl	93	92.715	ENSPMGG00000021081	srl	95	92.731	Periophthalmus_magnuspinnatus
ENSPFOG00000011408	srl	94	81.360	ENSPEMG00000015842	Srl	100	78.926	Peromyscus_maniculatus_bairdii
ENSPFOG00000011408	srl	89	68.421	ENSPMAG00000004786	srl	99	68.421	Petromyzon_marinus
ENSPFOG00000011408	srl	94	81.140	ENSPCIG00000012128	SRL	97	81.140	Phascolarctos_cinereus
ENSPFOG00000011408	srl	95	75.435	ENSPLAG00000002932	SRL	99	75.435	Poecilia_latipinna
ENSPFOG00000011408	srl	98	95.368	ENSPLAG00000008017	srl	99	96.170	Poecilia_latipinna
ENSPFOG00000011408	srl	96	73.695	ENSPMEG00000005890	SRL	61	73.684	Poecilia_mexicana
ENSPFOG00000011408	srl	100	97.624	ENSPMEG00000006745	srl	100	97.624	Poecilia_mexicana
ENSPFOG00000011408	srl	100	99.604	ENSPREG00000007751	srl	100	96.976	Poecilia_reticulata
ENSPFOG00000011408	srl	95	76.304	ENSPREG00000000315	SRL	99	76.304	Poecilia_reticulata
ENSPFOG00000011408	srl	89	82.558	ENSPPYG00000007053	SRL	98	82.367	Pongo_abelii
ENSPFOG00000011408	srl	93	81.457	ENSPCAG00000003378	-	50	81.457	Procavia_capensis
ENSPFOG00000011408	srl	94	81.498	ENSPCOG00000023135	SRL	99	82.086	Propithecus_coquereli
ENSPFOG00000011408	srl	94	81.140	ENSPVAG00000006586	SRL	55	81.140	Pteropus_vampyrus
ENSPFOG00000011408	srl	96	73.486	ENSPNYG00000003423	SRL	58	73.486	Pundamilia_nyererei
ENSPFOG00000011408	srl	98	93.082	ENSPNYG00000001200	srl	100	94.824	Pundamilia_nyererei
ENSPFOG00000011408	srl	98	72.689	ENSPNAG00000007361	-	94	72.689	Pygocentrus_nattereri
ENSPFOG00000011408	srl	98	88.703	ENSPNAG00000023106	srl	100	89.212	Pygocentrus_nattereri
ENSPFOG00000011408	srl	97	80.000	ENSRNOG00000005269	Srl	51	80.000	Rattus_norvegicus
ENSPFOG00000011408	srl	93	81.015	ENSSBOG00000029273	SRL	100	77.938	Saimiri_boliviensis_boliviensis
ENSPFOG00000011408	srl	96	80.514	ENSSHAG00000011715	-	50	81.579	Sarcophilus_harrisii
ENSPFOG00000011408	srl	94	75.604	ENSSFOG00015021327	SRL	50	75.381	Scleropages_formosus
ENSPFOG00000011408	srl	98	88.333	ENSSFOG00015009773	srl	100	89.278	Scleropages_formosus
ENSPFOG00000011408	srl	93	73.233	ENSSMAG00000002232	SRL	50	73.233	Scophthalmus_maximus
ENSPFOG00000011408	srl	95	93.582	ENSSMAG00000016274	srl	100	93.789	Scophthalmus_maximus
ENSPFOG00000011408	srl	94	76.190	ENSSDUG00000009161	SRL	99	76.190	Seriola_dumerili
ENSPFOG00000011408	srl	94	94.066	ENSSDUG00000010808	srl	98	94.079	Seriola_dumerili
ENSPFOG00000011408	srl	94	75.957	ENSSLDG00000014601	SRL	100	76.496	Seriola_lalandi_dorsalis
ENSPFOG00000011408	srl	96	95.259	ENSSLDG00000022024	srl	100	95.228	Seriola_lalandi_dorsalis
ENSPFOG00000011408	srl	95	80.562	ENSSPUG00000016859	SRL	99	80.562	Sphenodon_punctatus
ENSPFOG00000011408	srl	98	92.902	ENSSPAG00000019105	srl	100	95.041	Stegastes_partitus
ENSPFOG00000011408	srl	93	77.483	ENSSPAG00000014254	SRL	98	77.483	Stegastes_partitus
ENSPFOG00000011408	srl	94	80.263	ENSSSCG00000007949	SRL	99	80.263	Sus_scrofa
ENSPFOG00000011408	srl	93	81.858	ENSTGUG00000003951	-	97	81.858	Taeniopygia_guttata
ENSPFOG00000011408	srl	75	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSPFOG00000011408	srl	89	76.566	ENSTRUG00000013310	SRL	55	76.389	Takifugu_rubripes
ENSPFOG00000011408	srl	97	93.067	ENSTRUG00000006005	srl	100	94.813	Takifugu_rubripes
ENSPFOG00000011408	srl	96	92.026	ENSTNIG00000009739	srl	100	91.701	Tetraodon_nigroviridis
ENSPFOG00000011408	srl	95	79.914	ENSUAMG00000005701	SRL	56	79.914	Ursus_americanus
ENSPFOG00000011408	srl	95	79.914	ENSUMAG00000002574	SRL	56	79.914	Ursus_maritimus
ENSPFOG00000011408	srl	95	79.957	ENSVVUG00000016331	-	50	79.957	Vulpes_vulpes
ENSPFOG00000011408	srl	98	77.339	ENSXETG00000017313	srl	99	80.306	Xenopus_tropicalis
ENSPFOG00000011408	srl	95	76.458	ENSXCOG00000014584	SRL	100	76.458	Xiphophorus_couchianus
ENSPFOG00000011408	srl	89	96.065	ENSXCOG00000010424	srl	97	96.074	Xiphophorus_couchianus
ENSPFOG00000011408	srl	96	73.904	ENSXMAG00000027598	SRL	64	73.904	Xiphophorus_maculatus
ENSPFOG00000011408	srl	100	99.208	ENSXMAG00000004625	srl	100	99.208	Xiphophorus_maculatus