EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPFOG00000012035 (Gene tree)
Gene ID: 103139618
Gene Symbol: smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 13913 bases
Position: chrKI519613.1:1952876-1966788
Accession: 103139618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000029771	EST1	PF10374.9	2.5e-12	1	1
ENSPFOP00000012198	EST1	PF10374.9	4.3e-12	1	1
ENSPFOP00000029771	EST1_DNA_bind	PF10373.9	3.4e-57	1	1
ENSPFOP00000012198	EST1_DNA_bind	PF10373.9	5.3e-57	1	1
ENSPFOP00000029771	PIN_4	PF13638.6	1e-23	1	1
ENSPFOP00000012198	PIN_4	PF13638.6	5.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000012215	-	7223	XM_007554346	ENSPFOP00000012198	1608 (aa)	XP_007554408	A0A087Y2E5
ENSPFOT00000024189	-	6432	-	ENSPFOP00000029771	1406 (aa)	-	A0A096MED0

Gene Model

Click here to download ENSPFOG00000012035's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000012035's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPFOG00000012035	smg6	100	51.239	ENSG00000070366	SMG6	100	59.590	Homo_sapiens
ENSPFOG00000012035	smg6	100	74.104	ENSAPOG00000019448	smg6	99	74.851	Acanthochromis_polyacanthus
ENSPFOG00000012035	smg6	100	51.444	ENSAMEG00000007632	SMG6	100	51.000	Ailuropoda_melanoleuca
ENSPFOG00000012035	smg6	93	70.733	ENSACIG00000012997	smg6	100	70.752	Amphilophus_citrinellus
ENSPFOG00000012035	smg6	100	73.434	ENSAOCG00000002630	smg6	100	74.172	Amphiprion_ocellaris
ENSPFOG00000012035	smg6	100	73.221	ENSAPEG00000019101	smg6	100	73.960	Amphiprion_percula
ENSPFOG00000012035	smg6	97	75.486	ENSATEG00000006483	smg6	100	70.995	Anabas_testudineus
ENSPFOG00000012035	smg6	86	46.190	ENSACAG00000011783	SMG6	99	46.251	Anolis_carolinensis
ENSPFOG00000012035	smg6	100	51.342	ENSANAG00000035760	SMG6	100	51.442	Aotus_nancymaae
ENSPFOG00000012035	smg6	99	73.599	ENSACLG00000005288	smg6	100	71.548	Astatotilapia_calliptera
ENSPFOG00000012035	smg6	74	68.637	ENSAMXG00000017326	smg6	93	66.884	Astyanax_mexicanus
ENSPFOG00000012035	smg6	100	51.477	ENSBTAG00000000267	SMG6	100	51.234	Bos_taurus
ENSPFOG00000012035	smg6	100	51.572	ENSCJAG00000001820	SMG6	100	51.643	Callithrix_jacchus
ENSPFOG00000012035	smg6	100	51.713	ENSCAFG00000019260	SMG6	100	51.574	Canis_familiaris
ENSPFOG00000012035	smg6	100	51.713	ENSCAFG00020009770	SMG6	100	51.574	Canis_lupus_dingo
ENSPFOG00000012035	smg6	100	51.678	ENSCHIG00000021998	SMG6	100	51.167	Capra_hircus
ENSPFOG00000012035	smg6	100	50.971	ENSTSYG00000003406	SMG6	100	59.328	Carlito_syrichta
ENSPFOG00000012035	smg6	88	55.069	ENSCAPG00000016197	SMG6	98	54.214	Cavia_aperea
ENSPFOG00000012035	smg6	100	50.202	ENSCPOG00000014878	SMG6	100	50.336	Cavia_porcellus
ENSPFOG00000012035	smg6	100	51.438	ENSCCAG00000035801	SMG6	100	51.604	Cebus_capucinus
ENSPFOG00000012035	smg6	100	51.609	ENSCATG00000031956	SMG6	100	51.639	Cercocebus_atys
ENSPFOG00000012035	smg6	100	50.436	ENSCLAG00000006748	SMG6	100	50.870	Chinchilla_lanigera
ENSPFOG00000012035	smg6	100	51.810	ENSCSAG00000013800	SMG6	100	51.839	Chlorocebus_sabaeus
ENSPFOG00000012035	smg6	100	51.371	ENSCPBG00000020369	SMG6	100	51.337	Chrysemys_picta_bellii
ENSPFOG00000012035	smg6	97	51.755	ENSCANG00000031764	SMG6	100	59.963	Colobus_angolensis_palliatus
ENSPFOG00000012035	smg6	53	42.527	ENSCGRG00001019595	Smg6	97	43.552	Cricetulus_griseus_chok1gshd
ENSPFOG00000012035	smg6	97	47.026	ENSCGRG00000007782	Smg6	99	47.862	Cricetulus_griseus_crigri
ENSPFOG00000012035	smg6	96	72.174	ENSCSEG00000012757	smg6	100	65.706	Cynoglossus_semilaevis
ENSPFOG00000012035	smg6	100	85.041	ENSCVAG00000012789	smg6	100	83.190	Cyprinodon_variegatus
ENSPFOG00000012035	smg6	100	64.453	ENSDARG00000100481	smg6	100	60.228	Danio_rerio
ENSPFOG00000012035	smg6	100	50.703	ENSDNOG00000048283	SMG6	100	50.869	Dasypus_novemcinctus
ENSPFOG00000012035	smg6	100	48.292	ENSDORG00000016614	Smg6	100	48.032	Dipodomys_ordii
ENSPFOG00000012035	smg6	86	87.500	ENSETEG00000016790	SMG6	87	87.500	Echinops_telfairi
ENSPFOG00000012035	smg6	67	48.220	ENSEBUG00000005059	smg6	61	48.361	Eptatretus_burgeri
ENSPFOG00000012035	smg6	99	51.442	ENSEASG00005009318	SMG6	99	51.436	Equus_asinus_asinus
ENSPFOG00000012035	smg6	99	51.509	ENSECAG00000006519	SMG6	99	51.503	Equus_caballus
ENSPFOG00000012035	smg6	100	44.542	ENSEEUG00000003493	SMG6	100	44.579	Erinaceus_europaeus
ENSPFOG00000012035	smg6	85	70.545	ENSELUG00000005934	smg6	86	65.695	Esox_lucius
ENSPFOG00000012035	smg6	100	51.473	ENSFCAG00000028817	SMG6	100	51.335	Felis_catus
ENSPFOG00000012035	smg6	98	51.444	ENSFALG00000006538	SMG6	99	51.270	Ficedula_albicollis
ENSPFOG00000012035	smg6	100	50.434	ENSFDAG00000015106	SMG6	100	50.700	Fukomys_damarensis
ENSPFOG00000012035	smg6	99	87.126	ENSFHEG00000013282	smg6	100	86.347	Fundulus_heteroclitus
ENSPFOG00000012035	smg6	62	72.000	ENSGMOG00000019077	smg6	67	72.000	Gadus_morhua
ENSPFOG00000012035	smg6	100	50.698	ENSGALG00000003108	SMG6	98	50.599	Gallus_gallus
ENSPFOG00000012035	smg6	100	94.263	ENSGAFG00000000379	smg6	100	94.139	Gambusia_affinis
ENSPFOG00000012035	smg6	90	73.920	ENSGACG00000020521	smg6	100	73.505	Gasterosteus_aculeatus
ENSPFOG00000012035	smg6	90	52.655	ENSGAGG00000025617	SMG6	92	52.990	Gopherus_agassizii
ENSPFOG00000012035	smg6	100	51.373	ENSGGOG00000017156	SMG6	100	51.438	Gorilla_gorilla
ENSPFOG00000012035	smg6	99	73.579	ENSHBUG00000021311	smg6	100	70.991	Haplochromis_burtoni
ENSPFOG00000012035	smg6	100	50.635	ENSHGLG00000012882	SMG6	100	50.907	Heterocephalus_glaber_female
ENSPFOG00000012035	smg6	100	50.702	ENSHGLG00100017815	SMG6	100	50.974	Heterocephalus_glaber_male
ENSPFOG00000012035	smg6	73	68.843	ENSHCOG00000008761	smg6	83	68.489	Hippocampus_comes
ENSPFOG00000012035	smg6	97	60.821	ENSIPUG00000012493	smg6	100	53.580	Ictalurus_punctatus
ENSPFOG00000012035	smg6	100	50.872	ENSSTOG00000028127	SMG6	100	51.275	Ictidomys_tridecemlineatus
ENSPFOG00000012035	smg6	78	46.751	ENSJJAG00000015367	Smg6	96	45.654	Jaculus_jaculus
ENSPFOG00000012035	smg6	100	79.616	ENSKMAG00000000279	smg6	100	75.136	Kryptolebias_marmoratus
ENSPFOG00000012035	smg6	97	74.825	ENSLBEG00000002184	smg6	100	69.749	Labrus_bergylta
ENSPFOG00000012035	smg6	53	43.556	ENSLACG00000000806	-	97	44.511	Latimeria_chalumnae
ENSPFOG00000012035	smg6	75	65.938	ENSLOCG00000006448	smg6	100	56.620	Lepisosteus_oculatus
ENSPFOG00000012035	smg6	100	50.600	ENSLAFG00000001261	SMG6	100	51.313	Loxodonta_africana
ENSPFOG00000012035	smg6	100	51.775	ENSMFAG00000003394	SMG6	100	51.805	Macaca_fascicularis
ENSPFOG00000012035	smg6	100	51.743	ENSMMUG00000023161	SMG6	100	51.773	Macaca_mulatta
ENSPFOG00000012035	smg6	100	49.430	ENSMNEG00000044592	SMG6	100	49.465	Macaca_nemestrina
ENSPFOG00000012035	smg6	92	61.331	ENSMLEG00000029353	SMG6	99	61.002	Mandrillus_leucophaeus
ENSPFOG00000012035	smg6	95	77.065	ENSMAMG00000020119	smg6	100	71.512	Mastacembelus_armatus
ENSPFOG00000012035	smg6	99	73.390	ENSMZEG00005024736	smg6	100	70.669	Maylandia_zebra
ENSPFOG00000012035	smg6	71	46.415	ENSMGAG00000005401	-	98	46.599	Meleagris_gallopavo
ENSPFOG00000012035	smg6	100	51.444	ENSMICG00000012913	SMG6	100	51.852	Microcebus_murinus
ENSPFOG00000012035	smg6	100	63.877	ENSMMOG00000010883	smg6	100	64.221	Mola_mola
ENSPFOG00000012035	smg6	100	51.819	ENSMODG00000010622	SMG6	100	51.311	Monodelphis_domestica
ENSPFOG00000012035	smg6	95	75.620	ENSMALG00000001106	smg6	100	69.171	Monopterus_albus
ENSPFOG00000012035	smg6	100	50.502	MGP_CAROLIEiJ_G0016729	Smg6	87	69.524	Mus_caroli
ENSPFOG00000012035	smg6	100	50.234	ENSMUSG00000038290	Smg6	87	69.206	Mus_musculus
ENSPFOG00000012035	smg6	100	50.437	MGP_PahariEiJ_G0017866	Smg6	87	68.889	Mus_pahari
ENSPFOG00000012035	smg6	100	50.167	MGP_SPRETEiJ_G0017572	Smg6	87	68.889	Mus_spretus
ENSPFOG00000012035	smg6	100	51.777	ENSMPUG00000013046	SMG6	100	51.301	Mustela_putorius_furo
ENSPFOG00000012035	smg6	100	51.580	ENSMLUG00000005739	SMG6	100	51.889	Myotis_lucifugus
ENSPFOG00000012035	smg6	98	50.822	ENSNGAG00000007287	Smg6	99	50.272	Nannospalax_galili
ENSPFOG00000012035	smg6	97	71.717	ENSNBRG00000009511	smg6	99	70.417	Neolamprologus_brichardi
ENSPFOG00000012035	smg6	97	51.931	ENSNLEG00000017171	SMG6	100	59.590	Nomascus_leucogenys
ENSPFOG00000012035	smg6	90	53.927	ENSMEUG00000015804	SMG6	92	53.438	Notamacropus_eugenii
ENSPFOG00000012035	smg6	57	66.854	ENSOPRG00000000579	SMG6	87	52.041	Ochotona_princeps
ENSPFOG00000012035	smg6	100	46.066	ENSODEG00000008038	SMG6	100	45.406	Octodon_degus
ENSPFOG00000012035	smg6	99	73.830	ENSONIG00000005594	smg6	99	76.622	Oreochromis_niloticus
ENSPFOG00000012035	smg6	100	50.937	ENSOCUG00000013018	SMG6	100	50.430	Oryctolagus_cuniculus
ENSPFOG00000012035	smg6	99	71.683	ENSORLG00000003317	smg6	100	67.836	Oryzias_latipes
ENSPFOG00000012035	smg6	99	71.639	ENSORLG00020015343	smg6	100	67.877	Oryzias_latipes_hni
ENSPFOG00000012035	smg6	99	71.739	ENSORLG00015020454	smg6	100	68.138	Oryzias_latipes_hsok
ENSPFOG00000012035	smg6	100	72.664	ENSOMEG00000010838	smg6	100	68.130	Oryzias_melastigma
ENSPFOG00000012035	smg6	100	51.475	ENSOGAG00000004483	SMG6	100	51.475	Otolemur_garnettii
ENSPFOG00000012035	smg6	99	51.710	ENSOARG00000015076	SMG6	99	51.778	Ovis_aries
ENSPFOG00000012035	smg6	100	51.406	ENSPPAG00000043296	SMG6	100	51.371	Pan_paniscus
ENSPFOG00000012035	smg6	100	51.373	ENSPPRG00000014581	SMG6	100	51.236	Panthera_pardus
ENSPFOG00000012035	smg6	97	51.615	ENSPTIG00000008925	SMG6	100	60.075	Panthera_tigris_altaica
ENSPFOG00000012035	smg6	100	51.339	ENSPTRG00000008544	SMG6	100	59.590	Pan_troglodytes
ENSPFOG00000012035	smg6	100	51.810	ENSPANG00000024588	SMG6	100	51.839	Papio_anubis
ENSPFOG00000012035	smg6	90	49.295	ENSPSIG00000006660	SMG6	98	49.001	Pelodiscus_sinensis
ENSPFOG00000012035	smg6	94	78.261	ENSPMGG00000000844	smg6	99	77.582	Periophthalmus_magnuspinnatus
ENSPFOG00000012035	smg6	100	50.703	ENSPEMG00000020707	Smg6	100	51.078	Peromyscus_maniculatus_bairdii
ENSPFOG00000012035	smg6	100	99.067	ENSPLAG00000017660	smg6	100	99.067	Poecilia_latipinna
ENSPFOG00000012035	smg6	100	99.502	ENSPMEG00000000258	smg6	100	99.502	Poecilia_mexicana
ENSPFOG00000012035	smg6	100	96.644	ENSPREG00000010066	smg6	100	96.644	Poecilia_reticulata
ENSPFOG00000012035	smg6	100	48.035	ENSPPYG00000007790	SMG6	100	48.141	Pongo_abelii
ENSPFOG00000012035	smg6	96	61.772	ENSPCAG00000000552	SMG6	100	48.690	Procavia_capensis
ENSPFOG00000012035	smg6	100	51.174	ENSPCOG00000020925	SMG6	100	51.546	Propithecus_coquereli
ENSPFOG00000012035	smg6	83	51.981	ENSPVAG00000002159	SMG6	73	62.324	Pteropus_vampyrus
ENSPFOG00000012035	smg6	91	72.877	ENSPNYG00000024151	smg6	99	70.218	Pundamilia_nyererei
ENSPFOG00000012035	smg6	99	59.409	ENSPNAG00000015480	smg6	100	54.402	Pygocentrus_nattereri
ENSPFOG00000012035	smg6	100	50.468	ENSRNOG00000003041	Smg6	87	69.841	Rattus_norvegicus
ENSPFOG00000012035	smg6	100	51.340	ENSRBIG00000024746	SMG6	100	51.438	Rhinopithecus_bieti
ENSPFOG00000012035	smg6	100	51.408	ENSRROG00000030423	SMG6	100	60.149	Rhinopithecus_roxellana
ENSPFOG00000012035	smg6	100	51.442	ENSSBOG00000022518	SMG6	100	50.201	Saimiri_boliviensis_boliviensis
ENSPFOG00000012035	smg6	99	51.633	ENSSHAG00000010045	SMG6	98	51.427	Sarcophilus_harrisii
ENSPFOG00000012035	smg6	78	68.519	ENSSFOG00015005436	smg6	100	51.512	Scleropages_formosus
ENSPFOG00000012035	smg6	97	74.688	ENSSMAG00000019777	smg6	100	69.785	Scophthalmus_maximus
ENSPFOG00000012035	smg6	97	77.223	ENSSDUG00000016412	smg6	100	73.687	Seriola_dumerili
ENSPFOG00000012035	smg6	87	76.694	ENSSLDG00000020747	smg6	98	73.950	Seriola_lalandi_dorsalis
ENSPFOG00000012035	smg6	99	50.947	ENSSPUG00000007152	SMG6	99	50.609	Sphenodon_punctatus
ENSPFOG00000012035	smg6	100	77.962	ENSSPAG00000015633	smg6	100	73.916	Stegastes_partitus
ENSPFOG00000012035	smg6	100	51.539	ENSSSCG00000017826	SMG6	100	51.436	Sus_scrofa
ENSPFOG00000012035	smg6	100	50.673	ENSTGUG00000005836	SMG6	100	50.712	Taeniopygia_guttata
ENSPFOG00000012035	smg6	100	64.224	ENSTRUG00000000358	smg6	98	65.798	Takifugu_rubripes
ENSPFOG00000012035	smg6	100	67.140	ENSTNIG00000016164	smg6	100	72.770	Tetraodon_nigroviridis
ENSPFOG00000012035	smg6	100	48.825	ENSTBEG00000011424	SMG6	100	49.022	Tupaia_belangeri
ENSPFOG00000012035	smg6	91	57.413	ENSTTRG00000001175	SMG6	91	57.536	Tursiops_truncatus
ENSPFOG00000012035	smg6	100	51.598	ENSUAMG00000025152	SMG6	100	51.882	Ursus_americanus
ENSPFOG00000012035	smg6	97	51.786	ENSUMAG00000009306	SMG6	99	52.132	Ursus_maritimus
ENSPFOG00000012035	smg6	85	95.833	ENSVPAG00000000225	SMG6	87	95.833	Vicugna_pacos
ENSPFOG00000012035	smg6	100	51.615	ENSVVUG00000021727	SMG6	100	51.745	Vulpes_vulpes
ENSPFOG00000012035	smg6	96	47.539	ENSXETG00000023799	SMG6	99	47.442	Xenopus_tropicalis
ENSPFOG00000012035	smg6	99	90.532	ENSXCOG00000009867	smg6	99	90.572	Xiphophorus_couchianus
ENSPFOG00000012035	smg6	100	94.750	ENSXMAG00000010321	smg6	100	94.688	Xiphophorus_maculatus