EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: ENSPFOG00000012082 (Gene tree)
Gene ID: 103142193
Gene Symbol: rab5c (1 of many)
Alias: -
Full Name: RAB5C%2C member RAS oncogene family
Gene Type: protein_coding
Species: Poecilia_formosa
Status: putative
Strand: Minus strand
Length: 41901 bases
Position: chrKI519704.1:1075590-1117490
Accession: 103142193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPFOP00000012087	MMR_HSR1	PF01926.23	7e-05	1	1
ENSPFOP00000024443	MMR_HSR1	PF01926.23	7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPFOT00000012104	-	3240	-	ENSPFOP00000012087	220 (aa)	XP_007558176	A0A087Y234
ENSPFOT00000021930	-	3231	-	ENSPFOP00000024443	220 (aa)	XP_007558176	A0A087Y234

Gene Model

Click here to download ENSPFOG00000012082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPFOG00000012082's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPFOG00000012082	rab5c	100	100.000	ENSPFOG00000023458	rab5c	100	100.000
ENSPFOG00000012082	rab5c	89	42.929	ENSPFOG00000012594	rab1ba	76	46.626
ENSPFOG00000012082	rab5c	85	44.211	ENSPFOG00000013810	zgc:171927	75	46.012
ENSPFOG00000012082	rab5c	74	47.239	ENSPFOG00000006159	rab11ba	74	47.826
ENSPFOG00000012082	rab5c	72	35.583	ENSPFOG00000015409	si:dkey-13a21.4	79	35.583
ENSPFOG00000012082	rab5c	98	84.722	ENSPFOG00000011263	rab5aa	99	83.796
ENSPFOG00000012082	rab5c	73	37.952	ENSPFOG00000004037	rab33a	59	37.952
ENSPFOG00000012082	rab5c	89	37.313	ENSPFOG00000004746	si:dkey-16l2.16	96	35.821
ENSPFOG00000012082	rab5c	71	33.750	ENSPFOG00000008547	rab34a	52	33.750
ENSPFOG00000012082	rab5c	70	39.355	ENSPFOG00000017960	rabl2	69	39.355
ENSPFOG00000012082	rab5c	79	42.697	ENSPFOG00000003934	-	99	39.320
ENSPFOG00000012082	rab5c	66	33.562	ENSPFOG00000008678	si:cabz01085950.1	72	33.562
ENSPFOG00000012082	rab5c	89	30.476	ENSPFOG00000013066	RAB29	80	32.335
ENSPFOG00000012082	rab5c	96	91.549	ENSPFOG00000005901	-	100	90.135
ENSPFOG00000012082	rab5c	76	37.500	ENSPFOG00000001579	rab12	69	37.500
ENSPFOG00000012082	rab5c	91	43.902	ENSPFOG00000010632	rab25a	94	43.902
ENSPFOG00000012082	rab5c	66	36.424	ENSPFOG00000022360	-	63	36.424
ENSPFOG00000012082	rab5c	73	39.130	ENSPFOG00000017775	rab15	76	39.130
ENSPFOG00000012082	rab5c	89	37.436	ENSPFOG00000006655	rab35b	96	37.436
ENSPFOG00000012082	rab5c	89	41.176	ENSPFOG00000009284	rab11a	93	41.584
ENSPFOG00000012082	rab5c	74	34.356	ENSPFOG00000015499	kras	85	34.356
ENSPFOG00000012082	rab5c	90	32.710	ENSPFOG00000014499	si:dkey-34d22.5	75	36.747
ENSPFOG00000012082	rab5c	75	38.012	ENSPFOG00000009101	-	73	38.012
ENSPFOG00000012082	rab5c	86	42.328	ENSPFOG00000001167	-	87	42.328
ENSPFOG00000012082	rab5c	73	53.750	ENSPFOG00000013027	rab22a	98	53.750
ENSPFOG00000012082	rab5c	79	43.103	ENSPFOG00000011424	RAB41	82	43.103
ENSPFOG00000012082	rab5c	89	34.975	ENSPFOG00000020060	rab9b	97	33.990
ENSPFOG00000012082	rab5c	54	31.148	ENSPFOG00000012465	arl8a	66	31.061
ENSPFOG00000012082	rab5c	81	30.000	ENSPFOG00000008890	rras	72	32.298
ENSPFOG00000012082	rab5c	89	40.594	ENSPFOG00000005479	rab30	94	40.796
ENSPFOG00000012082	rab5c	93	39.512	ENSPFOG00000003742	rab6ba	99	39.512
ENSPFOG00000012082	rab5c	74	53.988	ENSPFOG00000012977	rab22a	84	53.988
ENSPFOG00000012082	rab5c	89	45.000	ENSPFOG00000001829	rab1ab	80	47.239
ENSPFOG00000012082	rab5c	81	41.667	ENSPFOG00000007571	rab18a	80	43.636
ENSPFOG00000012082	rab5c	74	38.415	ENSPFOG00000004838	rab42a	62	38.415
ENSPFOG00000012082	rab5c	95	38.389	ENSPFOG00000006314	-	77	40.957
ENSPFOG00000012082	rab5c	76	44.311	ENSPFOG00000019509	rab6a	80	44.311
ENSPFOG00000012082	rab5c	89	36.364	ENSPFOG00000000349	rab33ba	85	36.098
ENSPFOG00000012082	rab5c	54	31.148	ENSPFOG00000016361	arl8ba	63	30.645
ENSPFOG00000012082	rab5c	89	41.063	ENSPFOG00000006224	-	75	47.239
ENSPFOG00000012082	rab5c	74	37.805	ENSPFOG00000004684	-	77	37.805
ENSPFOG00000012082	rab5c	72	38.994	ENSPFOG00000013182	RAB15	76	38.994
ENSPFOG00000012082	rab5c	78	41.860	ENSPFOG00000014630	rab4a	76	43.478
ENSPFOG00000012082	rab5c	89	30.457	ENSPFOG00000002595	hrasb	95	30.457
ENSPFOG00000012082	rab5c	75	37.349	ENSPFOG00000004492	RAB39B	77	37.805
ENSPFOG00000012082	rab5c	70	31.818	ENSPFOG00000004921	rheb	84	32.468
ENSPFOG00000012082	rab5c	55	31.452	ENSPFOG00000003916	arl8bb	63	31.452
ENSPFOG00000012082	rab5c	89	44.615	ENSPFOG00000000498	-	94	44.615
ENSPFOG00000012082	rab5c	80	36.022	ENSPFOG00000022477	-	83	36.022
ENSPFOG00000012082	rab5c	77	45.977	ENSPFOG00000011310	rab25b	81	46.746
ENSPFOG00000012082	rab5c	74	47.239	ENSPFOG00000024114	-	75	47.239
ENSPFOG00000012082	rab5c	90	40.704	ENSPFOG00000019821	RAB14	92	40.704
ENSPFOG00000012082	rab5c	71	48.408	ENSPFOG00000011316	rab11al	73	48.408
ENSPFOG00000012082	rab5c	90	39.216	ENSPFOG00000004786	rab2a	76	44.099
ENSPFOG00000012082	rab5c	73	42.236	ENSPFOG00000014418	-	81	42.236
ENSPFOG00000012082	rab5c	71	33.125	ENSPFOG00000011444	rab34b	63	33.125
ENSPFOG00000012082	rab5c	68	38.710	ENSPFOG00000024704	rab9a	77	38.710
ENSPFOG00000012082	rab5c	78	42.614	ENSPFOG00000003465	RAB7A	99	38.835
ENSPFOG00000012082	rab5c	72	35.443	ENSPFOG00000011493	rab23	68	37.500
ENSPFOG00000012082	rab5c	91	40.299	ENSPFOG00000013491	rab18b	80	44.848
ENSPFOG00000012082	rab5c	95	38.389	ENSPFOG00000019144	-	77	40.957